Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003839

Physical Location & Seq

Genomic Coordinates Reverse (-)

28830948 .. 28845629

Gene Structure 14682 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31386

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGAATGGATTGCAAGTTCTTCTTGGATATATAAAGGATAAGGATGCAGATAAAGTATCTGTGGCCCTTGCATCTTCACTGGATACCATTGCTGAGCTTGAGTTATTACAGGCTCCAGGCCTGTCATTCTTGTTACCTGAGCAATACCAGAGATACCCAAGGCTTACAGGGAGAGGAACTGTTGAATTAATCATTGAGAAAGGTGACGGTTCAACATTTTCTCCAGAAGCTGGTGGCGAACCAAGAAAGACAGCCAGTATTCAGGTTGTTATAGATGGATATTCAGCACCATTAACAGCGGGTAATTTCGCAAAACTGGTAAGTGATGGGGCATACAATGGGGCAAAGCTCAGCTCGACCGACCAAGCTATTCTCTCAGATAGTGGTCTTGACAAGAACAGTGGTTCTAGTGTTCCTTTAGAAATCAAGCCATCTGGGCAATTTGAGCCCTTGTATAGAACAAAATTAGATGTCCAGGACGGGGAATTGCCAGTTCTTCCGCTATCTGTTTATGGATCAGTTGCAATGGCACATAGTGAAGCCTCTGACGAGTACTCCTCACCATATCAGTTTTTCTTCTATCTTTATGATAAAAGAAATGCTGGCTTGGGAGGATTATCATTTGATGAAGGAGAATTTTCAGTTTTTGGATACACAACAGTTGGGAAAGATATTCTTTCACAGATAAAAACTGGAGATGTGATTCGATCTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0036211 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

238

Amino Acids

25.46

Weight (kDa)

4.57

Isoelectric Point (pI)

29.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	86 - 234	7.5e-13	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003839)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15520 AT3G15520 AT3G15520 AT3G15520
fragaria_vesca	FvH4_3g20740 FvH4_3g20740 FvH4_3g20740 FvH4_3g20740 FvH4_3g20740 FvH4_3g20740 FvH4_3g20740 FvH4_3g20740 FvH4_3g20740
malus_domestica	MD03G1222300.v1.1
prunus_persica	Prupe.4G187400_v2.0.a1 Prupe.4G187400_v2.0.a1 Prupe.4G187400_v2.0.a1 Prupe.4G187400_v2.0.a1 Prupe.4G187400_v2.0.a1
pyrus_communis	pycom03g17090
rosa_chinensis	RchiOBHm_Chr5g0034911 RchiOBHm_Chr5g0034961
rosa_laevigata	RLG00000033585 RLG00000033588
rosa_multiflora	Rmu_co8461127.1_g000001 Rmu_sc0001580.1_g000024
rosa_roxburghii	Rroxscaffold_1G00045420
rosa_rugosa	Rorug05G0149100 Rorug05G0149100
rosa_samantha	Rh5AG242100 Rh5BG241700 Rh5CG273200 Rh5DG250300
rosa_wichuraiana	Rw5G022110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	230
AciI	CCGC	2 cut(s)	299, 500
AclWI	GGATC	1 cut(s)	523
AcsI	RAATTY	1 cut(s)	635
AdeI	CACNNNGTG	1 cut(s)	536
AfaI	GTAC	1 cut(s)	554
AfiI	CCNNNNNNNGG	2 cut(s)	230, 481
AgsI	TTSAA	2 cut(s)	185, 213
AjnI	CCWGG	2 cut(s)	115, 474
AloI	GAACNNNNNNTCC	1 cut(s)	32
AluBI	AGCT	5 cut(s)	97, 230, 349, 354, 368
AluI	AGCT	5 cut(s)	97, 230, 349, 354, 368
AlwI	GGATC	1 cut(s)	523
AlwNI	CAGNNNCTG	1 cut(s)	230
AoxI	GGCC	2 cut(s)	63, 118
ApoI	RAATTY	1 cut(s)	635
AseI	ATTAAT	1 cut(s)	188
AspS9I	GGNCC	1 cut(s)	64
AsuHPI	GGTGA	2 cut(s)	215, 552
BanII	GRGCYC	1 cut(s)	450
BccI	CCATC	3 cut(s)	269, 320, 439
BciT130I	CCWGG	2 cut(s)	117, 476
BciVI	GTATCC	2 cut(s)	76, 644
BfaI	CTAG	1 cut(s)	408
BfuI	GTATCC	2 cut(s)	76, 644
BglI	GCCNNNNNGGC	1 cut(s)	436
BlpI	GCTNAGC	2 cut(s)	93, 350
BmcAI	AGTACT	1 cut(s)	554
Bme1390I	CCNGG	2 cut(s)	117, 476
BmgT120I	GGNCC	1 cut(s)	64
BmiI	GGNNCC	1 cut(s)	114
BmrFI	CCNGG	2 cut(s)	117, 476
BmsI	GCATC	2 cut(s)	34, 80
BplI	GAGNNNNNCTC	2 cut(s)	542, 574
BpmI	CTGGAG	3 cut(s)	99, 207, 714
Bpu10I	CCTNAGC	1 cut(s)	138
Bpu1102I	GCTNAGC	2 cut(s)	93, 350
BpuEI	CTTGAG	1 cut(s)	119
BsaJI	CCNNGG	1 cut(s)	158
BsaXI	ACNNNNNCTCC	4 cut(s)	205, 235, 539, 569
Bsc4I	CCNNNNNNNGG	2 cut(s)	230, 481
Bse1I	ACTGG	5 cut(s)	84, 255, 321, 491, 697
Bse3DI	GCAATG	2 cut(s)	87, 531
BseBI	CCWGG	2 cut(s)	117, 476
BseDI	CCNNGG	1 cut(s)	158
BseGI	GGATG	1 cut(s)	49
BseLI	CCNNNNNNNGG	2 cut(s)	230, 481
BseMI	GCAATG	2 cut(s)	87, 531
BseMII	CTCAG	4 cut(s)	84, 129, 364, 390
BseNI	ACTGG	5 cut(s)	84, 255, 321, 491, 697
BseRI	GAGGAG	1 cut(s)	547
Bsh1285I	CGRYCG	1 cut(s)	360
BshFI	GGCC	2 cut(s)	65, 120
BsiEI	CGRYCG	1 cut(s)	360
BslI	CCNNNNNNNGG	2 cut(s)	230, 481
BsnI	GGCC	2 cut(s)	65, 120
Bsp1286I	GDGCHC	1 cut(s)	450
Bsp143I	GATC	2 cut(s)	515, 707
Bsp1720I	GCTNAGC	2 cut(s)	93, 350
BspACI	CCGC	2 cut(s)	299, 500
BspANI	GGCC	2 cut(s)	65, 120
BspCNI	CTCAG	4 cut(s)	85, 130, 363, 389
BspLI	GGNNCC	1 cut(s)	114
BspPI	GGATC	1 cut(s)	523
BsrDI	GCAATG	2 cut(s)	87, 531
BsrI	ACTGG	5 cut(s)	84, 255, 321, 491, 697
BssECI	CCNNGG	1 cut(s)	158
BssMI	GATC	2 cut(s)	515, 707
BssT1I	CCWWGG	1 cut(s)	158
Bst2UI	CCWGG	2 cut(s)	117, 476
Bst4CI	ACNGT	4 cut(s)	181, 209, 401, 661
BstC8I	GCNNGC	1 cut(s)	604
BstDEI	CTNAG	4 cut(s)	93, 138, 350, 376
BstF5I	GGATG	1 cut(s)	49
BstKTI	GATC	2 cut(s)	518, 710
BstMBI	GATC	2 cut(s)	515, 707
BstMCI	CGRYCG	1 cut(s)	360
BstMWI	GCNNNNNNNGC	2 cut(s)	436, 445
BstNI	CCWGG	2 cut(s)	117, 476
BstSCI	CCNGG	2 cut(s)	115, 474
BsuI	GTATCC	2 cut(s)	76, 644
BsuRI	GGCC	2 cut(s)	65, 120
BtsCI	GGATG	1 cut(s)	49
BtsIMutI	CAGTG	2 cut(s)	77, 406
Cac8I	GCNNGC	1 cut(s)	604
CaiI	CAGNNNCTG	1 cut(s)	230
Cfr13I	GGNCC	1 cut(s)	64
Csp6I	GTAC	1 cut(s)	553
CspCI	CAANNNNNGTGG	2 cut(s)	382, 417
CviQI	GTAC	1 cut(s)	553
DdeI	CTNAG	4 cut(s)	93, 138, 350, 376
DpnI	GATC	2 cut(s)	517, 709
DpnII	GATC	2 cut(s)	515, 707
DraIII	CACNNNGTG	1 cut(s)	536
Eco130I	CCWWGG	1 cut(s)	158
Eco147I	AGGCCT	1 cut(s)	120
Eco24I	GRGCYC	1 cut(s)	450
EcoRII	CCWGG	2 cut(s)	115, 474
EcoT14I	CCWWGG	1 cut(s)	158
EcoT38I	GRGCYC	1 cut(s)	450
ErhI	CCWWGG	1 cut(s)	158
FalI	AAGNNNNNCTT	3 cut(s)	38, 660, 692
FauI	CCCGC	1 cut(s)	292
FokI	GGATG	1 cut(s)	56
FriOI	GRGCYC	1 cut(s)	450
FspBI	CTAG	1 cut(s)	408
GsuI	CTGGAG	3 cut(s)	99, 207, 714
HaeIII	GGCC	2 cut(s)	65, 120
HinfI	GANTC	1 cut(s)	703
HphI	GGTGA	2 cut(s)	215, 552
Hpy188I	TCNGA	2 cut(s)	379, 547
Hpy188III	TCNNGA	2 cut(s)	224, 389
HpyAV	CCTTC	1 cut(s)	623
HpyCH4III	ACNGT	4 cut(s)	181, 209, 401, 661
HpyCH4V	TGCA	5 cut(s)	13, 47, 71, 524, 713
HpyF10VI	GCNNNNNNNGC	2 cut(s)	436, 445
HpyF3I	CTNAG	4 cut(s)	93, 138, 350, 376
Kzo9I	GATC	2 cut(s)	515, 707
LmnI	GCTCC	1 cut(s)	118
LweI	GCATC	2 cut(s)	34, 80
MaeI	CTAG	1 cut(s)	408
MaeIII	GTNAC	2 cut(s)	132, 203
MalI	GATC	2 cut(s)	517, 709
MboI	GATC	2 cut(s)	515, 707
MboII	GAAGA	4 cut(s)	11, 66, 488, 568
MhlI	GDGCHC	1 cut(s)	450
MluCI	AATT	6 cut(s)	185, 304, 440, 464, 485, 635
MnlI	CCTC	4 cut(s)	167, 553, 568, 605
MseI	TTAA	2 cut(s)	188, 293
MspA1I	CMGCKG	1 cut(s)	299
MspR9I	CCNGG	2 cut(s)	117, 476
MvaI	CCWGG	2 cut(s)	117, 476
MwoI	GCNNNNNNNGC	2 cut(s)	436, 445
NdeII	GATC	2 cut(s)	515, 707
NlaIV	GGNNCC	1 cut(s)	114
NmuCI	GTSAC	1 cut(s)	203
PceI	AGGCCT	1 cut(s)	120
PfeI	GAWTC	1 cut(s)	703
PflMI	CCANNNNNTGG	1 cut(s)	230
PfoI	TCCNGGA	1 cut(s)	474
PshBI	ATTAAT	1 cut(s)	188
Psp6I	CCWGG	2 cut(s)	115, 474
PspGI	CCWGG	2 cut(s)	115, 474
PspN4I	GGNNCC	1 cut(s)	114
PspPI	GGNCC	1 cut(s)	64
PstNI	CAGNNNCTG	1 cut(s)	230
RsaI	GTAC	1 cut(s)	554
RsaNI	GTAC	1 cut(s)	553
SaqAI	TTAA	2 cut(s)	188, 293
Sau3AI	GATC	2 cut(s)	515, 707
Sau96I	GGNCC	1 cut(s)	64
ScaI	AGTACT	1 cut(s)	554
ScrFI	CCNGG	2 cut(s)	117, 476
SduI	GDGCHC	1 cut(s)	450
SetI	ASST	8 cut(s)	99, 139, 205, 232, 267, 351, 356, 370
SfaNI	GCATC	2 cut(s)	34, 80
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
Sse9I	AATT	6 cut(s)	185, 304, 440, 464, 485, 635
SseBI	AGGCCT	1 cut(s)	120
SsiI	CCGC	2 cut(s)	299, 500
SspMI	CTAG	1 cut(s)	408
StuI	AGGCCT	1 cut(s)	120
StyD4I	CCNGG	2 cut(s)	115, 474
StyI	CCWWGG	1 cut(s)	158
TaaI	ACNGT	4 cut(s)	181, 209, 401, 661
TaqI	TCGA	2 cut(s)	356, 706
TaqII	GACCGA	1 cut(s)	374
TasI	AATT	6 cut(s)	185, 304, 440, 464, 485, 635
TatI	WGTACW	1 cut(s)	552
TfiI	GAWTC	1 cut(s)	703
Tru1I	TTAA	2 cut(s)	188, 293
Tru9I	TTAA	2 cut(s)	188, 293
TscAI	CASTG	2 cut(s)	84, 406
TseFI	GTSAC	1 cut(s)	203
Tsp45I	GTSAC	1 cut(s)	203
TspDTI	ATGAA	2 cut(s)	17, 642
TspRI	CASTG	2 cut(s)	84, 406
Van91I	CCANNNNNTGG	1 cut(s)	230
VspI	ATTAAT	1 cut(s)	188
XapI	RAATTY	1 cut(s)	635
XspI	CTAG	1 cut(s)	408
ZrmI	AGTACT	1 cut(s)	554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.