AT3G15520

Peptidyl-prolyl cis-trans isomerase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
5249599 .. 5252792
3194 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G15520.2

Sequence Viewer

Length: 1401 bp
ATGGCTTCTCCTTTGTCTTCTTCCACCGTCGTCTCTCACCGCCTTTTTTTTCTCCATCCTTCACCTCTCAATCGCAAATTCCTCTTCGTAAAACCCAAATTACCCTTTAATCGAACCAATTCCGGAGATTTCCGCATGCGTCTGCATTCTACATCCAGTAAAACTGGCACTAAGGAACTTATACATTCCTGCAATTCTTCAATTGATTCGAAGTTGAACACTTTTGAAGCTGGATCTAAAAACCTCGAGAAATTGGTTGCAACGATATTGATATTTGTTCAAGTATGGTCTCCATTGCCCTTGTTTGGTCTAGACTCTGCTTACATTTCACCTGCAGAGGCAGTTCTTTACTCTCCGGACACTAAAGTTCCAAGAACTGGAGAACTTGCTCTAAGAAGGGCTATACCTGCTAATCCAAGCATGAAGATAATACAGGCTTCGTTGGAAGATATATCATATCTTCTCAGAATTCCTCAAAGGAAGCCTTACGGTACCATGGAGAGCAATGTAAAGAAAGCTTTAAAGGTGGCTATAGATGATAAGGATAAGATCTTGGCTAGTATACCAGTAGACTTAAAAGACAAGGGCTCAGAACTGTATACAACTCTGATTGATGGAAAGGGTGGACTACAAGCACTTATAACGTCTATTAAGAAACAAGATCCTGATAAAGTGTCCCTTGGGCTGGCAGCATCACTAGATACTGTTGCGGATCTGGAGTTATTACAGGCATCTGGGTTGTCATTTCTACTTCCTCAGCAGTACTTAAACTATCCCAGGTTAGCAGGAAGAGGAACTGTGGAAATCACCATTGAGAAAGCTGATGGTTCGACTTTTTCAGCTGAAGCTGGAGGTGATCAAAGAAAGAGTGCTACAGTACAGATCGTTATAGATGGATATTCAGCACCTCTAACCGCAGGGAATTTTGCAAAACTGGTAACTAGCGGTGCATATGATGGAGCCAAACTCAATACTGTAAACCAGGCTGTTATCACAGAGGATGGGAGTGGTAAGGTGGAGAGTGTTAGTGTTCCATTGGAAGTAATGCCTTCTGGACAATTCGAACCTCTCTACAGAACGCCATTGAGTGTCCAGGATGGGGAGTTACCAGTGCTTCCTTTATCGGTTTATGGAGCTGTAGCAATGGCGCACAGCGAAAACTCAGAAGAATACTCTTCTCCTTACCAATTCTTCTTCTACCTATACGATAAAAGAAACTCTGGCTTAGGAGGATTATCCTTTGACGAAGGACAGTTCTCGGTCTTCGGATACACAATAGCAGGAAAAGATATTCTCGGGCAGATCAAGACTGGAGATATCATCAAATCTGCAAAACTAATTGAAGGCCAAGACCGCCTTAGTTTGCCTGTTCAAAACAACAACATCAACGAATCCACTTGA

Protein Analysis

466

Amino Acids

50.48

Weight (kDa)

6.56

Isoelectric Point (pI)

34.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CYP38_PsbQ-like PF21329 3 - 100 4.5e-13 Peptidyl-prolyl cis-trans isomerase CYP38-like, PsbQ-like domain
Pro_isomerase PF00160 152 - 302 9.9e-14 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 641
AarI CACCTGC 1 cut(s) 340
Acc36I ACCTGC 2 cut(s) 340, 415
Acc65I GGTACC 1 cut(s) 491
AccB1I GGYRCC 1 cut(s) 491
AccB7I CCANNNNNTGG 1 cut(s) 377
AccI GTMKAC 3 cut(s) 562, 570, 599
AccIII TCCGGA 2 cut(s) 122, 355
AciI CCGC 6 cut(s) 40, 133, 710, 915, 945, 1354
AclWI GGATC 3 cut(s) 241, 656, 720
AcsI RAATTY 3 cut(s) 77, 468, 922
AcuI CTGAAG 1 cut(s) 864
AfaI GTAC 3 cut(s) 493, 764, 879
AfiI CCNNNNNNNGG 4 cut(s) 305, 377, 685, 1099
AgsI TTSAA 6 cut(s) 201, 217, 227, 281, 1343, 1373
AjnI CCWGG 3 cut(s) 776, 981, 1092
AluBI AGCT 6 cut(s) 230, 518, 821, 842, 848, 1136
AluI AGCT 6 cut(s) 230, 518, 821, 842, 848, 1136
Alw26I GTCTC 2 cut(s) 37, 294
AlwI GGATC 3 cut(s) 241, 656, 720
Ama87I CYCGRG 2 cut(s) 245, 1295
Aor13HI TCCGGA 2 cut(s) 122, 355
AoxI GGCC 1 cut(s) 1345
ApeKI GCWGC 1 cut(s) 689
ApoI RAATTY 3 cut(s) 77, 468, 922
Asp700I GAANNNNTTC 1 cut(s) 118
Asp718I GGTACC 1 cut(s) 491
AspLEI GCGC 1 cut(s) 1150
AsuHPI GGTGA 5 cut(s) 29, 54, 321, 799, 866
AsuII TTCGAA 2 cut(s) 209, 1062
AvaI CYCGRG 2 cut(s) 245, 1295
BanI GGYRCC 1 cut(s) 491
BanII GRGCYC 1 cut(s) 590
BbsI GAAGAC 2 cut(s) 9, 1255
BbvCI CCTCAGC 1 cut(s) 756
BbvI GCAGC 1 cut(s) 701
BccI CCATC 7 cut(s) 63, 608, 818, 887, 950, 995, 1091
BciT130I CCWGG 3 cut(s) 778, 983, 1094
BciVI GTATCC 1 cut(s) 1262
BclI TGATCA 1 cut(s) 856
BcoDI GTCTC 2 cut(s) 37, 294
BfaI CTAG 4 cut(s) 311, 558, 698, 942
BfmI CTRYAG 5 cut(s) 333, 531, 873, 1072, 1137
BfuAI ACCTGC 2 cut(s) 340, 415
BfuI GTATCC 1 cut(s) 1262
BglII AGATCT 1 cut(s) 549
BisI GCNGC 1 cut(s) 690
BlsI GCNGC 1 cut(s) 691
BmcAI AGTACT 1 cut(s) 764
Bme1390I CCNGG 3 cut(s) 778, 983, 1094
BmeT110I CYCGRG 2 cut(s) 245, 1295
BmiI GGNNCC 2 cut(s) 493, 961
BmrFI CCNGG 3 cut(s) 778, 983, 1094
BmsI GCATC 2 cut(s) 701, 740
BpiI GAAGAC 2 cut(s) 9, 1255
BplI GAGNNNNNCTC 2 cut(s) 951, 983
BpmI CTGGAG 4 cut(s) 399, 737, 870, 1332
Bpu10I CCTNAGC 2 cut(s) 756, 1225
Bpu14I TTCGAA 2 cut(s) 209, 1062
BsaI GGTCTC 1 cut(s) 294
BsaJI CCNNGG 3 cut(s) 495, 679, 776
BsaWI WCCGGW 2 cut(s) 122, 355
Bsc4I CCNNNNNNNGG 4 cut(s) 305, 377, 685, 1099
Bse1I ACTGG 7 cut(s) 156, 169, 382, 566, 939, 1109, 1315
Bse3DI GCAATG 3 cut(s) 293, 511, 1149
BseAI TCCGGA 2 cut(s) 122, 355
BseBI CCWGG 3 cut(s) 778, 983, 1094
BseDI CCNNGG 3 cut(s) 495, 679, 776
BseGI GGATG 4 cut(s) 55, 152, 1006, 1102
BseLI CCNNNNNNNGG 4 cut(s) 305, 377, 685, 1099
BseMI GCAATG 3 cut(s) 293, 511, 1149
BseMII CTCAG 4 cut(s) 478, 603, 770, 1176
BseNI ACTGG 7 cut(s) 156, 169, 382, 566, 939, 1109, 1315
BseXI GCAGC 1 cut(s) 701
BshFI GGCC 1 cut(s) 1347
BshNI GGYRCC 1 cut(s) 491
BsiHKCI CYCGRG 2 cut(s) 245, 1295
BsiSI CCGG 2 cut(s) 123, 356
BslFI GGGAC 1 cut(s) 661
BslI CCNNNNNNNGG 4 cut(s) 305, 377, 685, 1099
BsmAI GTCTC 2 cut(s) 37, 294
BsmBI CGTCTC 1 cut(s) 37
BsmFI GGGAC 1 cut(s) 661
BsmI GAATGC 1 cut(s) 145
BsnI GGCC 1 cut(s) 1347
Bso31I GGTCTC 1 cut(s) 294
BsoBI CYCGRG 2 cut(s) 245, 1295
Bsp119I TTCGAA 2 cut(s) 209, 1062
Bsp1286I GDGCHC 1 cut(s) 590
Bsp13I TCCGGA 2 cut(s) 122, 355
Bsp143I GATC 7 cut(s) 233, 549, 661, 712, 856, 882, 1302
Bsp19I CCATGG 1 cut(s) 495
BspACI CCGC 6 cut(s) 40, 133, 710, 915, 945, 1354
BspANI GGCC 1 cut(s) 1347
BspCNI CTCAG 4 cut(s) 477, 602, 769, 1175
BspEI TCCGGA 2 cut(s) 122, 355
BspLI GGNNCC 2 cut(s) 493, 961
BspMAI CTGCAG 1 cut(s) 337
BspMI ACCTGC 2 cut(s) 340, 415
BspPI GGATC 3 cut(s) 241, 656, 720
BspT104I TTCGAA 2 cut(s) 209, 1062
BspT107I GGYRCC 1 cut(s) 491
BspTNI GGTCTC 1 cut(s) 294
BsrDI GCAATG 3 cut(s) 293, 511, 1149
BsrI ACTGG 7 cut(s) 156, 169, 382, 566, 939, 1109, 1315
BssECI CCNNGG 3 cut(s) 495, 679, 776
BssMI GATC 7 cut(s) 233, 549, 661, 712, 856, 882, 1302
BssNAI GTATAC 2 cut(s) 563, 600
BssT1I CCWWGG 2 cut(s) 495, 679
Bst1107I GTATAC 2 cut(s) 563, 600
Bst2UI CCWGG 3 cut(s) 778, 983, 1094
Bst4CI ACNGT 8 cut(s) 28, 491, 597, 706, 799, 877, 976, 1254
Bst6I CTCTTC 3 cut(s) 89, 784, 1180
BstBI TTCGAA 2 cut(s) 209, 1062
BstC8I GCNNGC 2 cut(s) 137, 687
BstDEI CTNAG 8 cut(s) 171, 392, 464, 589, 756, 1162, 1225, 1358
BstDSI CCRYGG 1 cut(s) 495
BstF5I GGATG 4 cut(s) 55, 152, 1006, 1102
BstHHI GCGC 1 cut(s) 1150
BstKTI GATC 7 cut(s) 236, 552, 664, 715, 859, 885, 1305
BstMAI GTCTC 2 cut(s) 37, 294
BstMBI GATC 7 cut(s) 233, 549, 661, 712, 856, 882, 1302
BstMWI GCNNNNNNNGC 2 cut(s) 407, 1353
BstNI CCWGG 3 cut(s) 778, 983, 1094
BstNSI RCATGY 1 cut(s) 139
BstSCI CCNGG 3 cut(s) 776, 981, 1092
BstSFI CTRYAG 5 cut(s) 333, 531, 873, 1072, 1137
BstV1I GCAGC 1 cut(s) 701
BstV2I GAAGAC 2 cut(s) 9, 1255
BstX2I RGATCY 4 cut(s) 233, 549, 661, 712
BstYI RGATCY 4 cut(s) 233, 549, 661, 712
BstZ17I GTATAC 2 cut(s) 563, 600
BsuI GTATCC 1 cut(s) 1262
BsuRI GGCC 1 cut(s) 1347
BtgI CCRYGG 1 cut(s) 495
BtsCI GGATG 4 cut(s) 55, 152, 1006, 1102
BtsIMutI CAGTG 1 cut(s) 1116
BveI ACCTGC 2 cut(s) 340, 415
Cac8I GCNNGC 2 cut(s) 137, 687
CfoI GCGC 1 cut(s) 1150
CseI GACGC 1 cut(s) 128
Csp6I GTAC 3 cut(s) 492, 763, 878
CviAII CATG 3 cut(s) 136, 421, 496
CviQI GTAC 3 cut(s) 492, 763, 878
DdeI CTNAG 8 cut(s) 171, 392, 464, 589, 756, 1162, 1225, 1358
DpnI GATC 7 cut(s) 235, 551, 663, 714, 858, 884, 1304
DpnII GATC 7 cut(s) 233, 549, 661, 712, 856, 882, 1302
DraI TTTAAA 1 cut(s) 522
Eam1104I CTCTTC 3 cut(s) 89, 784, 1180
EarI CTCTTC 3 cut(s) 89, 784, 1180
Eco130I CCWWGG 2 cut(s) 495, 679
Eco24I GRGCYC 1 cut(s) 590
Eco31I GGTCTC 1 cut(s) 294
Eco32I GATATC 1 cut(s) 1318
Eco57I CTGAAG 1 cut(s) 864
Eco88I CYCGRG 2 cut(s) 245, 1295
EcoRI GAATTC 1 cut(s) 468
EcoRII CCWGG 3 cut(s) 776, 981, 1092
EcoRV GATATC 1 cut(s) 1318
EcoT14I CCWWGG 2 cut(s) 495, 679
EcoT38I GRGCYC 1 cut(s) 590
ErhI CCWWGG 2 cut(s) 495, 679
Esp3I CGTCTC 1 cut(s) 37
FaeI CATG 3 cut(s) 139, 424, 499
FalI AAGNNNNNCTT 6 cut(s) 469, 501, 663, 695, 1341, 1373
FaqI GGGAC 1 cut(s) 661
FatI CATG 3 cut(s) 135, 420, 495
FauNDI CATATG 1 cut(s) 952
FbaI TGATCA 1 cut(s) 856
FblI GTMKAC 3 cut(s) 562, 570, 599
Fnu4HI GCNGC 1 cut(s) 690
FokI GGATG 4 cut(s) 42, 139, 1013, 1109
FriOI GRGCYC 1 cut(s) 590
Fsp4HI GCNGC 1 cut(s) 690
FspBI CTAG 4 cut(s) 311, 558, 698, 942
GlaI GCGC 1 cut(s) 1149
GluI GCNGC 1 cut(s) 690
GsuI CTGGAG 4 cut(s) 399, 737, 870, 1332
HaeIII GGCC 1 cut(s) 1347
HapII CCGG 2 cut(s) 123, 356
HgaI GACGC 1 cut(s) 128
HhaI GCGC 1 cut(s) 1150
Hin1II CATG 3 cut(s) 139, 424, 499
Hin6I GCGC 1 cut(s) 1148
HinP1I GCGC 1 cut(s) 1148
HindIII AAGCTT 1 cut(s) 516
HinfI GANTC 3 cut(s) 206, 314, 1391
HpaII CCGG 2 cut(s) 123, 356
HphI GGTGA 5 cut(s) 29, 54, 321, 799, 866
Hpy166II GTNNAC 5 cut(s) 563, 571, 600, 626, 979
Hpy188I TCNGA 5 cut(s) 467, 592, 609, 1165, 1268
Hpy188III TCNNGA 8 cut(s) 123, 247, 311, 356, 665, 716, 1053, 1306
Hpy8I GTNNAC 5 cut(s) 563, 571, 600, 626, 979
Hpy99I CGWCG 1 cut(s) 32
HpyAV CCTTC 5 cut(s) 69, 390, 1059, 1241, 1337
HpyCH4III ACNGT 8 cut(s) 28, 491, 597, 706, 799, 877, 976, 1254
HpyCH4IV ACGT 1 cut(s) 644
HpyCH4V TGCA 7 cut(s) 145, 192, 260, 335, 929, 950, 1331
HpyF10VI GCNNNNNNNGC 2 cut(s) 407, 1353
HpyF3I CTNAG 8 cut(s) 171, 392, 464, 589, 756, 1162, 1225, 1358
HpySE526I ACGT 1 cut(s) 644
Hsp92II CATG 3 cut(s) 139, 424, 499
HspAI GCGC 1 cut(s) 1148
Kpn2I TCCGGA 2 cut(s) 122, 355
KpnI GGTACC 1 cut(s) 495
Ksp22I TGATCA 1 cut(s) 856
Kzo9I GATC 7 cut(s) 233, 549, 661, 712, 856, 882, 1302
LmnI GCTCC 2 cut(s) 959, 1133
Lsp1109I GCAGC 1 cut(s) 701
LweI GCATC 2 cut(s) 701, 740
MaeI CTAG 4 cut(s) 311, 558, 698, 942
MaeII ACGT 1 cut(s) 644
MaeIII GTNAC 2 cut(s) 937, 1104
MalI GATC 7 cut(s) 235, 551, 663, 714, 858, 884, 1304
MboI GATC 7 cut(s) 233, 549, 661, 712, 856, 882, 1302
MfeI CAATTG 1 cut(s) 201
MflI RGATCY 4 cut(s) 233, 549, 661, 712
MhlI GDGCHC 1 cut(s) 590
MlyI GAGTC 1 cut(s) 308
MmeI TCCRAC 1 cut(s) 423
MroI TCCGGA 2 cut(s) 122, 355
MroXI GAANNNNTTC 1 cut(s) 118
MseI TTAA 5 cut(s) 108, 521, 575, 651, 767
MspA1I CMGCKG 1 cut(s) 842
MspI CCGG 2 cut(s) 123, 356
MspR9I CCNGG 3 cut(s) 778, 983, 1094
MunI CAATTG 1 cut(s) 201
Mva1269I GAATGC 1 cut(s) 145
MvaI CCWGG 3 cut(s) 778, 983, 1094
MwoI GCNNNNNNNGC 2 cut(s) 407, 1353
NcoI CCATGG 1 cut(s) 495
NdeI CATATG 1 cut(s) 952
NdeII GATC 7 cut(s) 233, 549, 661, 712, 856, 882, 1302
NlaIII CATG 3 cut(s) 139, 424, 499
NlaIV GGNNCC 2 cut(s) 493, 961
NspI RCATGY 1 cut(s) 139
NspV TTCGAA 2 cut(s) 209, 1062
PaeI GCATGC 1 cut(s) 139
PaeR7I CTCGAG 1 cut(s) 245
PaqCI CACCTGC 1 cut(s) 340
PctI GAATGC 1 cut(s) 145
PdmI GAANNNNTTC 1 cut(s) 118
PfeI GAWTC 2 cut(s) 206, 1391
PflMI CCANNNNNTGG 1 cut(s) 377
PfoI TCCNGGA 1 cut(s) 1092
PkrI GCNGC 1 cut(s) 691
PleI GAGTC 1 cut(s) 308
PpsI GAGTC 1 cut(s) 308
PsiI TTATAA 1 cut(s) 641
Psp6I CCWGG 3 cut(s) 776, 981, 1092
PspGI CCWGG 3 cut(s) 776, 981, 1092
PspN4I GGNNCC 2 cut(s) 493, 961
PstI CTGCAG 1 cut(s) 337
PsuI RGATCY 4 cut(s) 233, 549, 661, 712
PvuII CAGCTG 1 cut(s) 842
RsaI GTAC 3 cut(s) 493, 764, 879
RsaNI GTAC 3 cut(s) 492, 763, 878
SaqAI TTAA 5 cut(s) 108, 521, 575, 651, 767
SatI GCNGC 1 cut(s) 690
Sau3AI GATC 7 cut(s) 233, 549, 661, 712, 856, 882, 1302
ScaI AGTACT 1 cut(s) 764
SchI GAGTC 1 cut(s) 308
ScrFI CCNGG 3 cut(s) 778, 983, 1094
SduI GDGCHC 1 cut(s) 590
SfaNI GCATC 2 cut(s) 701, 740
SfcI CTRYAG 5 cut(s) 333, 531, 873, 1072, 1137
Sfr274I CTCGAG 1 cut(s) 245
SfuI TTCGAA 2 cut(s) 209, 1062
SlaI CTCGAG 1 cut(s) 245
SmlI CTYRAG 1 cut(s) 245
SmoI CTYRAG 1 cut(s) 245
SphI GCATGC 1 cut(s) 139
SsiI CCGC 6 cut(s) 40, 133, 710, 915, 945, 1354
SspMI CTAG 4 cut(s) 311, 558, 698, 942
StyD4I CCNGG 3 cut(s) 776, 981, 1092
StyI CCWWGG 2 cut(s) 495, 679
TaaI ACNGT 8 cut(s) 28, 491, 597, 706, 799, 877, 976, 1254
TaiI ACGT 1 cut(s) 647
TaqI TCGA 5 cut(s) 112, 209, 246, 830, 1062
TaqII GACCGA 1 cut(s) 1249
TatI WGTACW 2 cut(s) 762, 877
TfiI GAWTC 2 cut(s) 206, 1391
Tru1I TTAA 5 cut(s) 108, 521, 575, 651, 767
Tru9I TTAA 5 cut(s) 108, 521, 575, 651, 767
TscAI CASTG 1 cut(s) 1116
TseI GCWGC 1 cut(s) 689
TspDTI ATGAA 1 cut(s) 437
TspRI CASTG 1 cut(s) 1116
Van91I CCANNNNNTGG 1 cut(s) 377
XapI RAATTY 3 cut(s) 77, 468, 922
XbaI TCTAGA 1 cut(s) 310
XceI RCATGY 1 cut(s) 139
XhoI CTCGAG 1 cut(s) 245
XmiI GTMKAC 3 cut(s) 562, 570, 599
XmnI GAANNNNTTC 1 cut(s) 118
XspI CTAG 4 cut(s) 311, 558, 698, 942
ZrmI AGTACT 1 cut(s) 764
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.