Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0003839

Physical Location & Seq

Genomic Coordinates Forward (+)

30653663 .. 30660855

Gene Structure 7193 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1222300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1383 bp

ATGGCATTCCCTCTATCCTCCACCATCGTCTCTCACAAGCTATCTCTCAATGTTTCCATTGCTCCCTCTACTCGAAGGCAGAATCTGAAGCCAACCCATTTCATATTTTGCTTTAATCGGAAAACTCCAGAAAGATCAGGCCTCTCCAGGGTTCATTCCATGTCCAATAACAATCACCCAAAGGAACTCAAAGATCAGCATAGTACTCTTACCAATTCCTCCACATCAACTTCTCCACTTAAAAACAAATTTGAAAGTCTAATTGCTGTGATCCTTGTGTTTGTCCAAATATCTTCTCCACTTCCTTTGGTTGGTTGGGATGTTTTGCCCGTTTCATCACCTGCAAATGCAGTTCTTTATTCACCAGACACCAAGGTTCCTAGAACAGGAGAACTGGCTTTAAGGAGGGCTATCCCTGCAAACACGAACATGAAAACCATACAGGACTCTCTGGAAGAGATTTTGTACCTGCTAAGAATTCCACAGAGAAAGCCTTATGGAACCATGGAGGGAAATGTGAAGAAAGCTTTAAAGACAGCAACAGACGAAAAGGATACAATTCTGGCAAGTGTACCAACAAACTTGAGGGAGAAGGGTTCCACATTATATGCATCTCTTATTGATGGAAAGAACGGATTGCAAGCTCTTCTTCAATGTATAAAGGATAAGGACCCAGATAAAGTATCAGTATACCTTGCATCTTCACTGGATACAATTGCAGAGCTGGAGTTATTGCAGGCTCCAGGCTTGTCATTTTTGCTGCCCGAGCAGTACCAGAGATACCCAAGGTTTACAGGGAGAGGAACTGTTGAACTTACAATTGAGAAAGGTGATGGTTCGACATTTTCTCCAGAAGCTGGTGGTGAACCAAGAAAGACTGCTACAATTCAGGTTGTTATAGATGGATATTCAGCACCACTAACAGCTGGGAATTTCGCAAAACTGGTAATTGATGAGGCATACGATGGGACAAAGCTCAGCTCTACCGACCAAGCTATTCTCTCATACAATGGCCTTGACAAGAAAAGTGGTAACAGTGTTCCTCTAGAGATAAAGCCATCTGGGCAATTTGAGCCCTTGTACAAAACAAAATTAGACGTGCAGGATGGCGAGTTGCCAGTTCTTCCACTATCTGTCTACGGAGCAGTTGCAATGGCACATAGTGAAGTCTCCGATGAGTACTCATCACCATATCAGTTTTTCTTCTATCTGTATGATAAACGAAATGCTGGCTTGGGAGGATTATCATTTGATGAAGGAGAATTCTCAGTTTTCGGATACACAACTGTTGGGAAAGATATTCTTTCACAGATAAAAACCGGAGATGTGATCCGATCTGCAAAACTGGTCGAAGGTCAAGATCGTCTTGTATTGCCCGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0036211 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

461

Amino Acids

50.34

Weight (kDa)

6.64

Isoelectric Point (pI)

38.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CYP38_PsbQ-like	PF21329	134 - 243	5.2e-15	Peptidyl-prolyl cis-trans isomerase CYP38-like, PsbQ-like domain
Pro_isomerase	PF00160	295 - 447	8.9e-12	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003839)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15520 AT3G15520 AT3G15520 AT3G15520
fragaria_vesca	FvH4_3g20740 FvH4_3g20740 FvH4_3g20740 FvH4_3g20740 FvH4_3g20740 FvH4_3g20740 FvH4_3g20740 FvH4_3g20740 FvH4_3g20740
malus_domestica	MD03G1222300.v1.1
prunus_persica	Prupe.4G187400_v2.0.a1 Prupe.4G187400_v2.0.a1 Prupe.4G187400_v2.0.a1 Prupe.4G187400_v2.0.a1 Prupe.4G187400_v2.0.a1
pyrus_communis	pycom03g17090
rosa_chinensis	RchiOBHm_Chr5g0034911 RchiOBHm_Chr5g0034961
rosa_laevigata	RLG00000033585 RLG00000033588
rosa_multiflora	Rmu_co8461127.1_g000001 Rmu_sc0001580.1_g000024
rosa_roxburghii	Rroxscaffold_1G00045420
rosa_rugosa	Rorug05G0149100 Rorug05G0149100
rosa_samantha	Rh5AG242100 Rh5BG241700 Rh5CG273200 Rh5DG250300
rosa_wichuraiana	Rw5G022110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	349
Acc36I	ACCTGC	2 cut(s)	349, 477
AccB7I	CCANNNNNTGG	1 cut(s)	857
AccI	GTMKAC	2 cut(s)	690, 1137
AclWI	GGATC	2 cut(s)	265, 1324
AcsI	RAATTY	4 cut(s)	248, 477, 931, 1262
AcuI	CTGAAG	1 cut(s)	107
AdeI	CACNNNGTG	1 cut(s)	1163
AfaI	GTAC	6 cut(s)	205, 467, 573, 773, 1082, 1181
AfiI	CCNNNNNNNGG	4 cut(s)	148, 311, 386, 857
AgsI	TTSAA	3 cut(s)	254, 653, 812
AjiI	CACGTC	1 cut(s)	1099
AjnI	CCWGG	2 cut(s)	146, 742
AluBI	AGCT	9 cut(s)	40, 527, 644, 724, 857, 926, 976, 981, 995
AluI	AGCT	9 cut(s)	40, 527, 644, 724, 857, 926, 976, 981, 995
Alw26I	GTCTC	2 cut(s)	34, 1174
AlwI	GGATC	2 cut(s)	265, 1324
AlwNI	CAGNNNCTG	2 cut(s)	85, 857
Ama87I	CYCGRG	1 cut(s)	764
AoxI	GGCC	2 cut(s)	139, 1012
ApeKI	GCWGC	1 cut(s)	760
ApoI	RAATTY	4 cut(s)	248, 477, 931, 1262
AspS9I	GGNCC	1 cut(s)	670
AsuHPI	GGTGA	6 cut(s)	167, 330, 354, 842, 875, 1179
AvaI	CYCGRG	1 cut(s)	764
AvaII	GGWCC	1 cut(s)	670
BanII	GRGCYC	1 cut(s)	1077
BbvI	GCAGC	1 cut(s)	747
BccI	CCATC	7 cut(s)	32, 617, 827, 896, 959, 1066, 1100
BciT130I	CCWGG	2 cut(s)	148, 744
BciVI	GTATCC	3 cut(s)	547, 703, 1271
BcoDI	GTCTC	2 cut(s)	34, 1174
BfaI	CTAG	2 cut(s)	381, 1046
BfuAI	ACCTGC	2 cut(s)	349, 477
BfuI	GTATCC	3 cut(s)	547, 703, 1271
BglI	GCCNNNNNGGC	1 cut(s)	1063
BisI	GCNGC	1 cut(s)	761
BlpI	GCTNAGC	1 cut(s)	977
BlsI	GCNGC	1 cut(s)	762
BmcAI	AGTACT	2 cut(s)	205, 1181
Bme1390I	CCNGG	2 cut(s)	148, 744
Bme18I	GGWCC	1 cut(s)	670
BmeT110I	CYCGRG	1 cut(s)	764
BmgBI	CACGTC	1 cut(s)	1099
BmgT120I	GGNCC	1 cut(s)	670
BmiI	GGNNCC	5 cut(s)	378, 502, 598, 672, 741
BmrFI	CCNGG	2 cut(s)	148, 744
BmsI	GCATC	2 cut(s)	620, 707
BpmI	CTGGAG	5 cut(s)	111, 130, 726, 746, 834
Bpu1102I	GCTNAGC	1 cut(s)	977
BpuEI	CTTGAG	1 cut(s)	604
BsaJI	CCNNGG	4 cut(s)	147, 372, 504, 785
BsaWI	WCCGGW	1 cut(s)	1319
BsaXI	ACNNNNNCTCC	2 cut(s)	832, 862
Bsc4I	CCNNNNNNNGG	4 cut(s)	148, 311, 386, 857
Bse1I	ACTGG	5 cut(s)	399, 711, 948, 1118, 1350
Bse3DI	GCAATG	2 cut(s)	57, 1158
BseBI	CCWGG	2 cut(s)	148, 744
BseDI	CCNNGG	4 cut(s)	147, 372, 504, 785
BseGI	GGATG	2 cut(s)	325, 1111
BseLI	CCNNNNNNNGG	4 cut(s)	148, 311, 386, 857
BseMI	GCAATG	2 cut(s)	57, 1158
BseMII	CTCAG	2 cut(s)	991, 1281
BseNI	ACTGG	5 cut(s)	399, 711, 948, 1118, 1350
BseXI	GCAGC	1 cut(s)	747
BseYI	CCCAGC	1 cut(s)	926
BsgI	GTGCAG	1 cut(s)	1121
BshFI	GGCC	2 cut(s)	141, 1014
BsiHKCI	CYCGRG	1 cut(s)	764
BsiSI	CCGG	1 cut(s)	1320
BslFI	GGGAC	1 cut(s)	982
BslI	CCNNNNNNNGG	4 cut(s)	148, 311, 386, 857
BsmAI	GTCTC	2 cut(s)	34, 1174
BsmBI	CGTCTC	1 cut(s)	34
BsmFI	GGGAC	1 cut(s)	982
BsmI	GAATGC	1 cut(s)	5
BsnI	GGCC	2 cut(s)	141, 1014
BsoBI	CYCGRG	1 cut(s)	764
Bsp1286I	GDGCHC	1 cut(s)	1077
Bsp1407I	TGTACA	1 cut(s)	1080
Bsp143I	GATC	6 cut(s)	134, 193, 270, 1329, 1334, 1360
Bsp1720I	GCTNAGC	1 cut(s)	977
Bsp19I	CCATGG	1 cut(s)	504
BspANI	GGCC	2 cut(s)	141, 1014
BspCNI	CTCAG	2 cut(s)	990, 1280
BspLI	GGNNCC	5 cut(s)	378, 502, 598, 672, 741
BspMI	ACCTGC	2 cut(s)	349, 477
BspPI	GGATC	2 cut(s)	265, 1324
BspQI	GCTCTTC	1 cut(s)	651
BsrDI	GCAATG	2 cut(s)	57, 1158
BsrGI	TGTACA	1 cut(s)	1080
BsrI	ACTGG	5 cut(s)	399, 711, 948, 1118, 1350
BssECI	CCNNGG	4 cut(s)	147, 372, 504, 785
BssMI	GATC	6 cut(s)	134, 193, 270, 1329, 1334, 1360
BssNAI	GTATAC	1 cut(s)	691
BssT1I	CCWWGG	3 cut(s)	372, 504, 785
Bst1107I	GTATAC	1 cut(s)	691
Bst2UI	CCWGG	2 cut(s)	148, 744
Bst4CI	ACNGT	3 cut(s)	808, 1037, 1288
Bst6I	CTCTTC	2 cut(s)	450, 651
BstAUI	TGTACA	1 cut(s)	1080
BstC8I	GCNNGC	3 cut(s)	642, 738, 1231
BstDEI	CTNAG	3 cut(s)	473, 977, 1267
BstDSI	CCRYGG	1 cut(s)	504
BstENI	CCTNNNNNAGG	1 cut(s)	384
BstF5I	GGATG	2 cut(s)	325, 1111
BstKTI	GATC	6 cut(s)	137, 196, 273, 1332, 1337, 1363
BstMAI	GTCTC	2 cut(s)	34, 1174
BstMBI	GATC	6 cut(s)	134, 193, 270, 1329, 1334, 1360
BstMWI	GCNNNNNNNGC	4 cut(s)	416, 766, 1063, 1072
BstNI	CCWGG	2 cut(s)	148, 744
BstSCI	CCNGG	2 cut(s)	146, 742
BstV1I	GCAGC	1 cut(s)	747
BstZ17I	GTATAC	1 cut(s)	691
BsuI	GTATCC	3 cut(s)	547, 703, 1271
BsuRI	GGCC	2 cut(s)	141, 1014
BtgI	CCRYGG	1 cut(s)	504
BtrI	CACGTC	1 cut(s)	1099
BtsCI	GGATG	2 cut(s)	325, 1111
BtsIMutI	CAGTG	2 cut(s)	704, 1042
BveI	ACCTGC	2 cut(s)	349, 477
Cac8I	GCNNGC	3 cut(s)	642, 738, 1231
CaiI	CAGNNNCTG	2 cut(s)	85, 857
Cfr13I	GGNCC	1 cut(s)	670
Csp6I	GTAC	6 cut(s)	204, 466, 572, 772, 1081, 1180
CspCI	CAANNNNNGTGG	4 cut(s)	288, 323, 1009, 1044
CviAII	CATG	3 cut(s)	160, 430, 505
CviQI	GTAC	6 cut(s)	204, 466, 572, 772, 1081, 1180
DdeI	CTNAG	3 cut(s)	473, 977, 1267
DpnI	GATC	6 cut(s)	136, 195, 272, 1331, 1336, 1362
DpnII	GATC	6 cut(s)	134, 193, 270, 1329, 1334, 1360
DraI	TTTAAA	1 cut(s)	531
DraIII	CACNNNGTG	1 cut(s)	1163
Eam1104I	CTCTTC	2 cut(s)	450, 651
EarI	CTCTTC	2 cut(s)	450, 651
Eco130I	CCWWGG	3 cut(s)	372, 504, 785
Eco147I	AGGCCT	1 cut(s)	141
Eco24I	GRGCYC	1 cut(s)	1077
Eco47I	GGWCC	1 cut(s)	670
Eco57I	CTGAAG	1 cut(s)	107
Eco88I	CYCGRG	1 cut(s)	764
EcoNI	CCTNNNNNAGG	1 cut(s)	384
EcoO109I	RGGNCCY	1 cut(s)	670
EcoRI	GAATTC	2 cut(s)	477, 1262
EcoRII	CCWGG	2 cut(s)	146, 742
EcoT14I	CCWWGG	3 cut(s)	372, 504, 785
EcoT22I	ATGCAT	1 cut(s)	613
EcoT38I	GRGCYC	1 cut(s)	1077
ErhI	CCWWGG	3 cut(s)	372, 504, 785
Esp3I	CGTCTC	1 cut(s)	34
FaeI	CATG	3 cut(s)	163, 433, 508
FalI	AAGNNNNNCTT	6 cut(s)	633, 665, 1287, 1319, 1350, 1382
FaqI	GGGAC	1 cut(s)	982
FatI	CATG	3 cut(s)	159, 429, 504
FblI	GTMKAC	2 cut(s)	690, 1137
Fnu4HI	GCNGC	1 cut(s)	761
FokI	GGATG	2 cut(s)	332, 1118
FriOI	GRGCYC	1 cut(s)	1077
Fsp4HI	GCNGC	1 cut(s)	761
FspBI	CTAG	2 cut(s)	381, 1046
GluI	GCNGC	1 cut(s)	761
GsaI	CCCAGC	1 cut(s)	930
GsuI	CTGGAG	5 cut(s)	111, 130, 726, 746, 834
HaeIII	GGCC	2 cut(s)	141, 1014
HapII	CCGG	1 cut(s)	1320
Hin1II	CATG	3 cut(s)	163, 433, 508
HindIII	AAGCTT	1 cut(s)	525
HinfI	GANTC	2 cut(s)	82, 446
HpaII	CCGG	1 cut(s)	1320
HphI	GGTGA	6 cut(s)	167, 330, 354, 842, 875, 1179
Hpy166II	GTNNAC	5 cut(s)	572, 691, 792, 866, 1138
Hpy188I	TCNGA	5 cut(s)	87, 120, 1174, 1277, 1334
Hpy188III	TCNNGA	5 cut(s)	128, 452, 851, 1046, 1358
Hpy8I	GTNNAC	5 cut(s)	572, 691, 792, 866, 1138
HpyAV	CCTTC	4 cut(s)	69, 586, 1250, 1346
HpyCH4III	ACNGT	3 cut(s)	808, 1037, 1288
HpyCH4IV	ACGT	1 cut(s)	1098
HpyF10VI	GCNNNNNNNGC	4 cut(s)	416, 766, 1063, 1072
HpyF3I	CTNAG	3 cut(s)	473, 977, 1267
HpySE526I	ACGT	1 cut(s)	1098
Hsp92II	CATG	3 cut(s)	163, 433, 508
Kzo9I	GATC	6 cut(s)	134, 193, 270, 1329, 1334, 1360
LguI	GCTCTTC	1 cut(s)	651
LmnI	GCTCC	3 cut(s)	67, 745, 1142
Lsp1109I	GCAGC	1 cut(s)	747
LweI	GCATC	2 cut(s)	620, 707
MaeI	CTAG	2 cut(s)	381, 1046
MaeII	ACGT	1 cut(s)	1098
MaeIII	GTNAC	1 cut(s)	1031
MalI	GATC	6 cut(s)	136, 195, 272, 1331, 1336, 1362
MboI	GATC	6 cut(s)	134, 193, 270, 1329, 1334, 1360
MboII	GAAGA	8 cut(s)	285, 467, 532, 638, 641, 693, 1115, 1195
MfeI	CAATTG	2 cut(s)	714, 819
MhlI	GDGCHC	1 cut(s)	1077
MlyI	GAGTC	1 cut(s)	440
Mph1103I	ATGCAT	1 cut(s)	613
MseI	TTAA	4 cut(s)	114, 240, 401, 530
MslI	CAYNNNNRTG	1 cut(s)	428
MspA1I	CMGCKG	1 cut(s)	926
MspI	CCGG	1 cut(s)	1320
MspR9I	CCNGG	2 cut(s)	148, 744
MunI	CAATTG	2 cut(s)	714, 819
Mva1269I	GAATGC	1 cut(s)	5
MvaI	CCWGG	2 cut(s)	148, 744
MwoI	GCNNNNNNNGC	4 cut(s)	416, 766, 1063, 1072
NcoI	CCATGG	1 cut(s)	504
NdeII	GATC	6 cut(s)	134, 193, 270, 1329, 1334, 1360
NlaIII	CATG	3 cut(s)	163, 433, 508
NlaIV	GGNNCC	5 cut(s)	378, 502, 598, 672, 741
NsiI	ATGCAT	1 cut(s)	613
PaqCI	CACCTGC	1 cut(s)	349
PceI	AGGCCT	1 cut(s)	141
PciSI	GCTCTTC	1 cut(s)	651
PctI	GAATGC	1 cut(s)	5
PfeI	GAWTC	1 cut(s)	82
PflMI	CCANNNNNTGG	1 cut(s)	857
PkrI	GCNGC	1 cut(s)	762
PleI	GAGTC	1 cut(s)	440
PpsI	GAGTC	1 cut(s)	440
PpuMI	RGGWCCY	1 cut(s)	670
Psp5II	RGGWCCY	1 cut(s)	670
Psp6I	CCWGG	2 cut(s)	146, 742
PspFI	CCCAGC	1 cut(s)	926
PspGI	CCWGG	2 cut(s)	146, 742
PspN4I	GGNNCC	5 cut(s)	378, 502, 598, 672, 741
PspPI	GGNCC	1 cut(s)	670
PspPPI	RGGWCCY	1 cut(s)	670
PstNI	CAGNNNCTG	2 cut(s)	85, 857
PvuII	CAGCTG	1 cut(s)	926
RsaI	GTAC	6 cut(s)	205, 467, 573, 773, 1082, 1181
RsaNI	GTAC	6 cut(s)	204, 466, 572, 772, 1081, 1180
RseI	CAYNNNNRTG	1 cut(s)	428
SapI	GCTCTTC	1 cut(s)	651
SaqAI	TTAA	4 cut(s)	114, 240, 401, 530
SatI	GCNGC	1 cut(s)	761
Sau3AI	GATC	6 cut(s)	134, 193, 270, 1329, 1334, 1360
Sau96I	GGNCC	1 cut(s)	670
ScaI	AGTACT	2 cut(s)	205, 1181
SchI	GAGTC	1 cut(s)	440
ScrFI	CCNGG	2 cut(s)	148, 744
SduI	GDGCHC	1 cut(s)	1077
SfaNI	GCATC	2 cut(s)	620, 707
SinI	GGWCC	1 cut(s)	670
SmiMI	CAYNNNNRTG	1 cut(s)	428
SmlI	CTYRAG	1 cut(s)	583
SmoI	CTYRAG	1 cut(s)	583
SseBI	AGGCCT	1 cut(s)	141
SspMI	CTAG	2 cut(s)	381, 1046
StuI	AGGCCT	1 cut(s)	141
StyD4I	CCNGG	2 cut(s)	146, 742
StyI	CCWWGG	3 cut(s)	372, 504, 785
TaaI	ACNGT	3 cut(s)	808, 1037, 1288
TaiI	ACGT	1 cut(s)	1101
TaqI	TCGA	3 cut(s)	73, 839, 1350
TatI	WGTACW	3 cut(s)	203, 1080, 1179
TfiI	GAWTC	1 cut(s)	82
Tru1I	TTAA	4 cut(s)	114, 240, 401, 530
Tru9I	TTAA	4 cut(s)	114, 240, 401, 530
TscAI	CASTG	2 cut(s)	711, 1042
TseI	GCWGC	1 cut(s)	760
TspDTI	ATGAA	5 cut(s)	91, 143, 324, 446, 1269
TspGWI	ACGGA	2 cut(s)	648, 1155
TspRI	CASTG	2 cut(s)	711, 1042
Van91I	CCANNNNNTGG	1 cut(s)	857
VpaK11BI	GGWCC	1 cut(s)	670
XagI	CCTNNNNNAGG	1 cut(s)	384
XapI	RAATTY	4 cut(s)	248, 477, 931, 1262
XbaI	TCTAGA	1 cut(s)	1045
XmiI	GTMKAC	2 cut(s)	690, 1137
XspI	CTAG	2 cut(s)	381, 1046
ZrmI	AGTACT	2 cut(s)	205, 1181
Zsp2I	ATGCAT	1 cut(s)	613

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.