Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0003839

Physical Location & Seq

Genomic Coordinates Reverse (-)

30318700 .. 30324128

Gene Structure 5429 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G022110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGGCATTCCCTTTATCCTCCGCCACCATCTCTCACAACCTCTCCTTCAATGCTTCCACTCGCAGGCTTAGTTTGGGATTCAGCTACCTCAGTACTAGTGTTGTAGTTTCAGGACTCGAAGACCAACGTAGTACTCTTTCCAATTCCTACATGTCAACTAATGGATGTAAAAAGAAACTTGAGAGTTTAATTGCTGTGATCCTTGTGGTTGTCCAAATATCCTCTCCGCTTCCTTTGGTTGGTTGGGAGTTTTGGCCTATATCACCTGCGAACGCGGTTCTTTATTCTCCAGACACTAAGGTTCCCAGAACAGGAGAGTTAGCTTTAAGGAGGGCTATACCTGCAAACACAAACATGAAGGCCATGCAGGATTCTCTGGAGGAGATACTTTACTTGCTGAGAATCCCACAGAGAAAGCCTTATGGAACCATGGAGGGGAATGTGAAAAAAGCTCTAAAGATAGCAACAGATCAAAAGGACTCAATTTTGGCAAGTGTACCCACAGACTTGAGGGAGAAGGCTTCCACCTTACATGCATCTCTTATCGATGGAAAGAATGGATTGCAAGTTCTTCTTGGATATATAAAGGATAAGGATGCAGATAAAGTATCTGTGGCCCTTGCATCTTCACTGGATACCATTGCTGAGCTTGAGTTATTACAGGCTCCAGGCCTGTCATTCTTGTTACCTGAGCCATACCAGAGATACCCAAGGCTTACAGGGAGAGGAACTGTTGAATTAACCATTGAGAAAGGTGACGGTTCAACATTTTCTCCAGAAGCTGGTGGTGAACCAAGAAAGACAGCCAGTATTCAGGTTGTTATAGATGGATATTCAGCACCATTAACAGCGGGTAATTTCGCAAAACTGGTAAGTGATGGGGCATACAATGGGGCAAAGCTCAGCTCGACCGACCAAGCTATTCTCTCAGATAGTGGTCTTGACAAGAACAGTGGTTCTAGTGTTCCTTTAGAAATCAAGCCATCTGGGCAATTTGAGCCCTTGTATAGAACAAAATTAGATGTCCAGGACGGGGAATTGCCAGTTCTTCCGCTATCTGTTTATGGATCAGTTGCAATGGCACATAGTGAAGCCTCTGACGAGTACTCCTCACCATATCAGTTTTTCTTCTATCTTTATGATAAAAGAAATGCTGGCTTGGGAGGATTATCATTTGATGAAGGAGAATTTTCAGTTTTTGGATACACAACAGTTGGGAAAGATATTCTTTCACAGATAAAAACTGGAGATGTGATTCGATCTGCAAAGTTGGTCGAAGGTCAAGATCGTCTAGTGCTGCCAAATGAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0036211 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

437

Amino Acids

47.19

Weight (kDa)

5.51

Isoelectric Point (pI)

36.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CYP38_PsbQ-like	PF21329	109 - 218	5.8e-15	Peptidyl-prolyl cis-trans isomerase CYP38-like, PsbQ-like domain
Pro_isomerase	PF00160	270 - 422	1.5e-12	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003839)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15520 AT3G15520 AT3G15520 AT3G15520
fragaria_vesca	FvH4_3g20740 FvH4_3g20740 FvH4_3g20740 FvH4_3g20740 FvH4_3g20740 FvH4_3g20740 FvH4_3g20740 FvH4_3g20740 FvH4_3g20740
malus_domestica	MD03G1222300.v1.1
prunus_persica	Prupe.4G187400_v2.0.a1 Prupe.4G187400_v2.0.a1 Prupe.4G187400_v2.0.a1 Prupe.4G187400_v2.0.a1 Prupe.4G187400_v2.0.a1
pyrus_communis	pycom03g17090
rosa_chinensis	RchiOBHm_Chr5g0034911 RchiOBHm_Chr5g0034961
rosa_laevigata	RLG00000033585 RLG00000033588
rosa_multiflora	Rmu_co8461127.1_g000001 Rmu_sc0001580.1_g000024
rosa_roxburghii	Rroxscaffold_1G00045420
rosa_rugosa	Rorug05G0149100 Rorug05G0149100
rosa_samantha	Rh5AG242100 Rh5BG241700 Rh5CG273200 Rh5DG250300
rosa_wichuraiana	Rw5G022110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	274
Acc36I	ACCTGC	2 cut(s)	274, 349
AccB7I	CCANNNNNTGG	1 cut(s)	782
AccII	CGCG	1 cut(s)	275
AciI	CCGC	5 cut(s)	21, 227, 275, 851, 1052
AclWI	GGATC	2 cut(s)	193, 1075
AcsI	RAATTY	1 cut(s)	1187
AdeI	CACNNNGTG	1 cut(s)	1088
AfaI	GTAC	4 cut(s)	94, 133, 498, 1106
AfiI	CCNNNNNNNGG	6 cut(s)	63, 239, 311, 435, 782, 1033
AflIII	ACRYGT	1 cut(s)	150
AgsI	TTSAA	3 cut(s)	49, 737, 765
AhlI	ACTAGT	1 cut(s)	95
AjnI	CCWGG	2 cut(s)	667, 1026
AloI	GAACNNNNNNTCC	2 cut(s)	552, 584
AluBI	AGCT	8 cut(s)	84, 323, 452, 649, 782, 901, 906, 920
AluI	AGCT	8 cut(s)	84, 323, 452, 649, 782, 901, 906, 920
AlwI	GGATC	2 cut(s)	193, 1075
AlwNI	CAGNNNCTG	1 cut(s)	782
AoxI	GGCC	4 cut(s)	254, 360, 615, 670
ApeKI	GCWGC	1 cut(s)	1297
ApoI	RAATTY	1 cut(s)	1187
AspS9I	GGNCC	1 cut(s)	616
AsuHPI	GGTGA	4 cut(s)	255, 767, 800, 1104
BanII	GRGCYC	1 cut(s)	1002
BbsI	GAAGAC	1 cut(s)	126
BbvI	GCAGC	1 cut(s)	1284
BccI	CCATC	5 cut(s)	35, 542, 821, 872, 991
BciT130I	CCWGG	2 cut(s)	669, 1028
BciVI	GTATCC	2 cut(s)	628, 1196
BcuI	ACTAGT	1 cut(s)	95
BfaI	CTAG	3 cut(s)	96, 960, 1292
BfuAI	ACCTGC	2 cut(s)	274, 349
BfuI	GTATCC	2 cut(s)	628, 1196
BglI	GCCNNNNNGGC	1 cut(s)	988
BisI	GCNGC	1 cut(s)	1298
BlpI	GCTNAGC	2 cut(s)	645, 902
BlsI	GCNGC	1 cut(s)	1299
BmcAI	AGTACT	3 cut(s)	94, 133, 1106
Bme1390I	CCNGG	2 cut(s)	669, 1028
BmgT120I	GGNCC	1 cut(s)	616
BmiI	GGNNCC	3 cut(s)	303, 427, 666
BmrFI	CCNGG	2 cut(s)	669, 1028
BmsI	GCATC	3 cut(s)	545, 586, 632
BpiI	GAAGAC	1 cut(s)	126
BplI	GAGNNNNNCTC	2 cut(s)	1094, 1126
BpmI	CTGGAG	5 cut(s)	273, 398, 651, 759, 1266
Bpu10I	CCTNAGC	1 cut(s)	690
Bpu1102I	GCTNAGC	2 cut(s)	645, 902
BpuEI	CTTGAG	3 cut(s)	200, 529, 671
Bsa29I	ATCGAT	1 cut(s)	546
BsaJI	CCNNGG	2 cut(s)	429, 710
BsaXI	ACNNNNNCTCC	6 cut(s)	26, 56, 757, 787, 1091, 1121
Bsc4I	CCNNNNNNNGG	6 cut(s)	63, 239, 311, 435, 782, 1033
Bse1I	ACTGG	5 cut(s)	636, 807, 873, 1043, 1249
Bse3DI	GCAATG	2 cut(s)	639, 1083
BseBI	CCWGG	2 cut(s)	669, 1028
BseCI	ATCGAT	1 cut(s)	546
BseDI	CCNNGG	2 cut(s)	429, 710
BseGI	GGATG	2 cut(s)	170, 601
BseLI	CCNNNNNNNGG	6 cut(s)	63, 239, 311, 435, 782, 1033
BseMI	GCAATG	2 cut(s)	639, 1083
BseMII	CTCAG	6 cut(s)	103, 389, 636, 681, 916, 942
BseNI	ACTGG	5 cut(s)	636, 807, 873, 1043, 1249
BseRI	GAGGAG	2 cut(s)	395, 1099
BseXI	GCAGC	1 cut(s)	1284
Bsh1236I	CGCG	1 cut(s)	275
Bsh1285I	CGRYCG	1 cut(s)	912
BshFI	GGCC	4 cut(s)	256, 362, 617, 672
BshVI	ATCGAT	1 cut(s)	546
BsiEI	CGRYCG	1 cut(s)	912
BslI	CCNNNNNNNGG	6 cut(s)	63, 239, 311, 435, 782, 1033
BsmI	GAATGC	1 cut(s)	5
BsnI	GGCC	4 cut(s)	256, 362, 617, 672
Bsp1286I	GDGCHC	1 cut(s)	1002
Bsp143I	GATC	5 cut(s)	198, 469, 1067, 1259, 1285
Bsp1720I	GCTNAGC	2 cut(s)	645, 902
Bsp19I	CCATGG	1 cut(s)	429
BspACI	CCGC	5 cut(s)	21, 227, 275, 851, 1052
BspANI	GGCC	4 cut(s)	256, 362, 617, 672
BspCNI	CTCAG	6 cut(s)	102, 390, 637, 682, 915, 941
BspDI	ATCGAT	1 cut(s)	546
BspFNI	CGCG	1 cut(s)	275
BspLI	GGNNCC	3 cut(s)	303, 427, 666
BspMI	ACCTGC	2 cut(s)	274, 349
BspPI	GGATC	2 cut(s)	193, 1075
BsrDI	GCAATG	2 cut(s)	639, 1083
BsrI	ACTGG	5 cut(s)	636, 807, 873, 1043, 1249
BssECI	CCNNGG	2 cut(s)	429, 710
BssMI	GATC	5 cut(s)	198, 469, 1067, 1259, 1285
BssT1I	CCWWGG	2 cut(s)	429, 710
Bst2UI	CCWGG	2 cut(s)	669, 1028
Bst4CI	ACNGT	4 cut(s)	733, 761, 953, 1213
BstC8I	GCNNGC	2 cut(s)	65, 1156
BstDEI	CTNAG	8 cut(s)	68, 89, 297, 398, 645, 690, 902, 928
BstDSI	CCRYGG	1 cut(s)	429
BstF5I	GGATG	2 cut(s)	170, 601
BstFNI	CGCG	1 cut(s)	275
BstKTI	GATC	5 cut(s)	201, 472, 1070, 1262, 1288
BstMBI	GATC	5 cut(s)	198, 469, 1067, 1259, 1285
BstMCI	CGRYCG	1 cut(s)	912
BstMWI	GCNNNNNNNGC	3 cut(s)	341, 988, 997
BstNI	CCWGG	2 cut(s)	669, 1028
BstNSI	RCATGY	2 cut(s)	154, 536
BstSCI	CCNGG	2 cut(s)	667, 1026
BstUI	CGCG	1 cut(s)	275
BstV1I	GCAGC	1 cut(s)	1284
BstV2I	GAAGAC	1 cut(s)	126
Bsu15I	ATCGAT	1 cut(s)	546
BsuI	GTATCC	2 cut(s)	628, 1196
BsuRI	GGCC	4 cut(s)	256, 362, 617, 672
BsuTUI	ATCGAT	1 cut(s)	546
BtgI	CCRYGG	1 cut(s)	429
BtsCI	GGATG	2 cut(s)	170, 601
BtsIMutI	CAGTG	2 cut(s)	629, 958
BveI	ACCTGC	2 cut(s)	274, 349
Cac8I	GCNNGC	2 cut(s)	65, 1156
CaiI	CAGNNNCTG	1 cut(s)	782
Cfr13I	GGNCC	1 cut(s)	616
ClaI	ATCGAT	1 cut(s)	546
Csp6I	GTAC	4 cut(s)	93, 132, 497, 1105
CspCI	CAANNNNNGTGG	2 cut(s)	934, 969
CviAII	CATG	5 cut(s)	151, 355, 364, 430, 533
CviQI	GTAC	4 cut(s)	93, 132, 497, 1105
DdeI	CTNAG	8 cut(s)	68, 89, 297, 398, 645, 690, 902, 928
DpnI	GATC	5 cut(s)	200, 471, 1069, 1261, 1287
DpnII	GATC	5 cut(s)	198, 469, 1067, 1259, 1285
DraIII	CACNNNGTG	1 cut(s)	1088
EciI	GGCGGA	1 cut(s)	10
Eco130I	CCWWGG	2 cut(s)	429, 710
Eco147I	AGGCCT	1 cut(s)	672
Eco24I	GRGCYC	1 cut(s)	1002
EcoRII	CCWGG	2 cut(s)	667, 1026
EcoT14I	CCWWGG	2 cut(s)	429, 710
EcoT22I	ATGCAT	1 cut(s)	538
EcoT38I	GRGCYC	1 cut(s)	1002
ErhI	CCWWGG	2 cut(s)	429, 710
FaeI	CATG	5 cut(s)	154, 358, 367, 433, 536
FalI	AAGNNNNNCTT	4 cut(s)	558, 590, 1212, 1244
FatI	CATG	5 cut(s)	150, 354, 363, 429, 532
FauI	CCCGC	1 cut(s)	844
Fnu4HI	GCNGC	1 cut(s)	1298
FokI	GGATG	2 cut(s)	177, 608
FriOI	GRGCYC	1 cut(s)	1002
Fsp4HI	GCNGC	1 cut(s)	1298
FspBI	CTAG	3 cut(s)	96, 960, 1292
GluI	GCNGC	1 cut(s)	1298
GsuI	CTGGAG	5 cut(s)	273, 398, 651, 759, 1266
HaeIII	GGCC	4 cut(s)	256, 362, 617, 672
Hin1II	CATG	5 cut(s)	154, 358, 367, 433, 536
HincII	GTYRAC	1 cut(s)	156
HindII	GTYRAC	1 cut(s)	156
HinfI	GANTC	6 cut(s)	78, 114, 371, 402, 479, 1255
HphI	GGTGA	4 cut(s)	255, 767, 800, 1104
Hpy166II	GTNNAC	3 cut(s)	156, 497, 791
Hpy188I	TCNGA	2 cut(s)	931, 1099
Hpy188III	TCNNGA	6 cut(s)	111, 290, 377, 776, 941, 1283
Hpy8I	GTNNAC	3 cut(s)	156, 497, 791
HpyAV	CCTTC	5 cut(s)	55, 352, 511, 1175, 1271
HpyCH4III	ACNGT	4 cut(s)	733, 761, 953, 1213
HpyCH4IV	ACGT	1 cut(s)	127
HpyCH4V	TGCA	8 cut(s)	344, 367, 536, 565, 599, 623, 1076, 1265
HpyF10VI	GCNNNNNNNGC	3 cut(s)	341, 988, 997
HpyF3I	CTNAG	8 cut(s)	68, 89, 297, 398, 645, 690, 902, 928
HpySE526I	ACGT	1 cut(s)	127
Hsp92II	CATG	5 cut(s)	154, 358, 367, 433, 536
Kzo9I	GATC	5 cut(s)	198, 469, 1067, 1259, 1285
LmnI	GCTCC	1 cut(s)	670
Lsp1109I	GCAGC	1 cut(s)	1284
LweI	GCATC	3 cut(s)	545, 586, 632
MaeI	CTAG	3 cut(s)	96, 960, 1292
MaeII	ACGT	1 cut(s)	127
MaeIII	GTNAC	2 cut(s)	684, 755
MalI	GATC	5 cut(s)	200, 471, 1069, 1261, 1287
MboI	GATC	5 cut(s)	198, 469, 1067, 1259, 1285
MboII	GAAGA	5 cut(s)	131, 563, 618, 1040, 1120
MhlI	GDGCHC	1 cut(s)	1002
MluCI	AATT	9 cut(s)	142, 189, 483, 737, 856, 992, 1016, 1037, 1187
MlyI	GAGTC	2 cut(s)	108, 473
Mph1103I	ATGCAT	1 cut(s)	538
MseI	TTAA	4 cut(s)	188, 326, 740, 845
MslI	CAYNNNNRTG	1 cut(s)	353
MspA1I	CMGCKG	1 cut(s)	851
MspR9I	CCNGG	2 cut(s)	669, 1028
Mva1269I	GAATGC	1 cut(s)	5
MvaI	CCWGG	2 cut(s)	669, 1028
MvnI	CGCG	1 cut(s)	275
MwoI	GCNNNNNNNGC	3 cut(s)	341, 988, 997
NcoI	CCATGG	1 cut(s)	429
NdeII	GATC	5 cut(s)	198, 469, 1067, 1259, 1285
NlaIII	CATG	5 cut(s)	154, 358, 367, 433, 536
NlaIV	GGNNCC	3 cut(s)	303, 427, 666
NmuCI	GTSAC	1 cut(s)	755
NsiI	ATGCAT	1 cut(s)	538
NspI	RCATGY	2 cut(s)	154, 536
PaqCI	CACCTGC	1 cut(s)	274
PceI	AGGCCT	1 cut(s)	672
PciI	ACATGT	1 cut(s)	150
PctI	GAATGC	1 cut(s)	5
PfeI	GAWTC	4 cut(s)	78, 371, 402, 1255
PflMI	CCANNNNNTGG	1 cut(s)	782
PfoI	TCCNGGA	1 cut(s)	1026
PkrI	GCNGC	1 cut(s)	1299
PleI	GAGTC	2 cut(s)	108, 473
PpsI	GAGTC	2 cut(s)	108, 473
PscI	ACATGT	1 cut(s)	150
Psp6I	CCWGG	2 cut(s)	667, 1026
PspGI	CCWGG	2 cut(s)	667, 1026
PspN4I	GGNNCC	3 cut(s)	303, 427, 666
PspPI	GGNCC	1 cut(s)	616
PstNI	CAGNNNCTG	1 cut(s)	782
RsaI	GTAC	4 cut(s)	94, 133, 498, 1106
RsaNI	GTAC	4 cut(s)	93, 132, 497, 1105
RseI	CAYNNNNRTG	1 cut(s)	353
SaqAI	TTAA	4 cut(s)	188, 326, 740, 845
SatI	GCNGC	1 cut(s)	1298
Sau3AI	GATC	5 cut(s)	198, 469, 1067, 1259, 1285
Sau96I	GGNCC	1 cut(s)	616
ScaI	AGTACT	3 cut(s)	94, 133, 1106
SchI	GAGTC	2 cut(s)	108, 473
ScrFI	CCNGG	2 cut(s)	669, 1028
SduI	GDGCHC	1 cut(s)	1002
SfaNI	GCATC	3 cut(s)	545, 586, 632
SmiMI	CAYNNNNRTG	1 cut(s)	353
SmlI	CTYRAG	3 cut(s)	179, 508, 650
SmoI	CTYRAG	3 cut(s)	179, 508, 650
SpeI	ACTAGT	1 cut(s)	95
Sse9I	AATT	9 cut(s)	142, 189, 483, 737, 856, 992, 1016, 1037, 1187
SseBI	AGGCCT	1 cut(s)	672
SsiI	CCGC	5 cut(s)	21, 227, 275, 851, 1052
SspMI	CTAG	3 cut(s)	96, 960, 1292
StuI	AGGCCT	1 cut(s)	672
StyD4I	CCNGG	2 cut(s)	667, 1026
StyI	CCWWGG	2 cut(s)	429, 710
TaaI	ACNGT	4 cut(s)	733, 761, 953, 1213
TaiI	ACGT	1 cut(s)	130
TaqI	TCGA	5 cut(s)	117, 546, 908, 1258, 1275
TaqII	GACCGA	1 cut(s)	926
TasI	AATT	9 cut(s)	142, 189, 483, 737, 856, 992, 1016, 1037, 1187
TatI	WGTACW	3 cut(s)	92, 131, 1104
TfiI	GAWTC	4 cut(s)	78, 371, 402, 1255
Tru1I	TTAA	4 cut(s)	188, 326, 740, 845
Tru9I	TTAA	4 cut(s)	188, 326, 740, 845
TscAI	CASTG	2 cut(s)	636, 958
TseFI	GTSAC	1 cut(s)	755
TseI	GCWGC	1 cut(s)	1297
Tsp45I	GTSAC	1 cut(s)	755
TspDTI	ATGAA	2 cut(s)	371, 1194
TspRI	CASTG	2 cut(s)	636, 958
Van91I	CCANNNNNTGG	1 cut(s)	782
XapI	RAATTY	1 cut(s)	1187
XceI	RCATGY	2 cut(s)	154, 536
XspI	CTAG	3 cut(s)	96, 960, 1292
ZrmI	AGTACT	3 cut(s)	94, 133, 1106
Zsp2I	ATGCAT	1 cut(s)	538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.