Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003839

Physical Location & Seq

Genomic Coordinates Reverse (-)

13778310 .. 13783407

Gene Structure 5098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g20740.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGCAGGAACTCAAACATCAGCATAGTACTCTTGTCAATTCCTATATGTCAACCAATGGATATAAAAAGAAACTTGGAAGTTTAATTGCTGTGATCCTTGTGGTTGTCCAAATATCTTCTCCGCTTCCTTTGGTTGGTTGGGAGTTTTGGCCTATATCACCTGCAAATGCAGTTCTTTATTCTCCAGACACCAAGGTTCCCAGAACAGGAGAATTAGCTTTAAGGAGGGCTATACCTGCAAACCCAAGCATGAAGGCCATGCAGGATTCTCTGGAGGAGATACTGTACTTGTTGAGAATTCCACAGAGAAAGCCTTATGGAACCATGGAGGGAAATGTGAAAAAAGCTCTAAAGATAGCAACAGATGAAAAGGACTCAATTTTGGCAAGTGTACCCGCAGACTTGAGGGAGAAGGGTTCCACCTTACATGCATCTCTTATTGATGGAAAGAATGGATTGCAAGTTCTTCTTGGATATATAAAGGATAAGGATGCAGATAAAGTATCTGTGGCCCTTGCATCTTCACTGGATACCATTGCTGAGCTGGAGTTATTACAGGCTCCAGGCCTCTCATTCTTGTTGCCCGCGCAATACCAGAGTTACCCAAGGCTTACAGGGAGAGGAACTGTTGAATTAACCATTGAGAAGGGTGACGGTTCAACATTTGCTCCAGAAGCCGGTGGTGAACCGAGAAAGACAGCCACTATTCAGGTTGTTATAGATGGATATTCAGCACCGTTAACAGCGGGTAATTTCGCAAAACTGGTAAGTGATGGGGCATATGATGGGGCAAAGCTCAGCTCGACTGACCAAGCTGTTCTCTCAGCTAGTGGTTCTGACAAGTACAGTGGTCCTAGTGTTCCTCTAGAAATAAAGCCATCTGGGCAATTTGAGCCCTTATACAGAACAAAATTAGATGTGCAGGATGGGGAATTGCCAGTTCTTCCTCTATCTGTTTACGGATCAGTTGCGATGGCACATAGTGAAGCCTCTGACGAGTACTCATCACCATATCAATTTTTCTTCTATCTTTATGATAAAAGAAATGCTGGCTTGGGAGGATTATCGTTTGATGAAGGAGAATTCTCAGTTTTTGGATACACAACAGTAGGAAAAGATATTCTTTCACAGATAAAAACTGGCGACGTGATTCGATCAGCAAAGCTGGTCGAAGGTCAAGATCGTCTAGTGCTGCCAAATGAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0036211 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

403

Amino Acids

43.4

Weight (kDa)

5.46

Isoelectric Point (pI)

34.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CYP38_PsbQ-like	PF21329	133 - 242	2e-14	Peptidyl-prolyl cis-trans isomerase CYP38-like, PsbQ-like domain
Pro_isomerase	PF00160	294 - 446	6.5e-13	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003839)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15520 AT3G15520 AT3G15520 AT3G15520
fragaria_vesca	FvH4_3g20740 FvH4_3g20740 FvH4_3g20740 FvH4_3g20740 FvH4_3g20740 FvH4_3g20740 FvH4_3g20740 FvH4_3g20740 FvH4_3g20740
malus_domestica	MD03G1222300.v1.1
prunus_persica	Prupe.4G187400_v2.0.a1 Prupe.4G187400_v2.0.a1 Prupe.4G187400_v2.0.a1 Prupe.4G187400_v2.0.a1 Prupe.4G187400_v2.0.a1
pyrus_communis	pycom03g17090
rosa_chinensis	RchiOBHm_Chr5g0034911 RchiOBHm_Chr5g0034961
rosa_laevigata	RLG00000033585 RLG00000033588
rosa_multiflora	Rmu_co8461127.1_g000001 Rmu_sc0001580.1_g000024
rosa_roxburghii	Rroxscaffold_1G00045420
rosa_rugosa	Rorug05G0149100 Rorug05G0149100
rosa_samantha	Rh5AG242100 Rh5BG241700 Rh5CG273200 Rh5DG250300
rosa_wichuraiana	Rw5G022110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	169
Acc36I	ACCTGC	2 cut(s)	169, 244
AccII	CGCG	1 cut(s)	587
AciI	CCGC	4 cut(s)	122, 396, 585, 746
AclWI	GGATC	2 cut(s)	88, 970
AcsI	RAATTY	2 cut(s)	297, 1082
AdeI	CACNNNGTG	1 cut(s)	983
AfaI	GTAC	5 cut(s)	28, 287, 393, 845, 1001
AfiI	CCNNNNNNNGG	3 cut(s)	134, 206, 677
AgsI	TTSAA	2 cut(s)	632, 660
AjiI	CACGTC	1 cut(s)	1147
AjnI	CCWGG	1 cut(s)	562
AloI	GAACNNNNNNTCC	2 cut(s)	447, 479
AluBI	AGCT	8 cut(s)	218, 347, 544, 796, 801, 815, 827, 1165
AluI	AGCT	8 cut(s)	218, 347, 544, 796, 801, 815, 827, 1165
AlwI	GGATC	2 cut(s)	88, 970
AoxI	GGCC	4 cut(s)	149, 255, 510, 565
ApeKI	GCWGC	1 cut(s)	1192
ApoI	RAATTY	2 cut(s)	297, 1082
AspLEI	GCGC	1 cut(s)	589
AspS9I	GGNCC	2 cut(s)	511, 851
AsuHPI	GGTGA	4 cut(s)	150, 662, 695, 999
AvaII	GGWCC	1 cut(s)	851
BanII	GRGCYC	1 cut(s)	897
BbvI	GCAGC	1 cut(s)	1179
BccI	CCATC	7 cut(s)	437, 716, 767, 779, 886, 920, 967
BciT130I	CCWGG	1 cut(s)	564
BciVI	GTATCC	2 cut(s)	523, 1091
BfaI	CTAG	4 cut(s)	828, 855, 866, 1187
BfuAI	ACCTGC	2 cut(s)	169, 244
BfuI	GTATCC	2 cut(s)	523, 1091
BglI	GCCNNNNNGGC	1 cut(s)	883
BisI	GCNGC	1 cut(s)	1193
BlpI	GCTNAGC	2 cut(s)	540, 797
BlsI	GCNGC	1 cut(s)	1194
BmcAI	AGTACT	2 cut(s)	28, 1001
Bme1390I	CCNGG	1 cut(s)	564
Bme18I	GGWCC	1 cut(s)	851
BmgBI	CACGTC	1 cut(s)	1147
BmgT120I	GGNCC	2 cut(s)	511, 851
BmiI	GGNNCC	4 cut(s)	198, 322, 418, 561
BmrFI	CCNGG	1 cut(s)	564
BmsI	GCATC	3 cut(s)	440, 481, 527
BpmI	CTGGAG	5 cut(s)	168, 293, 546, 566, 654
Bpu1102I	GCTNAGC	2 cut(s)	540, 797
BpuEI	CTTGAG	1 cut(s)	424
BsaJI	CCNNGG	3 cut(s)	192, 324, 605
BsaXI	ACNNNNNCTCC	4 cut(s)	269, 299, 652, 682
Bsc4I	CCNNNNNNNGG	3 cut(s)	134, 206, 677
Bse118I	RCCGGY	1 cut(s)	677
Bse1I	ACTGG	4 cut(s)	531, 768, 938, 1144
Bse3DI	GCAATG	1 cut(s)	534
BseBI	CCWGG	1 cut(s)	564
BseDI	CCNNGG	3 cut(s)	192, 324, 605
BseGI	GGATG	2 cut(s)	496, 931
BseLI	CCNNNNNNNGG	3 cut(s)	134, 206, 677
BseMI	GCAATG	1 cut(s)	534
BseMII	CTCAG	4 cut(s)	531, 811, 837, 1101
BseNI	ACTGG	4 cut(s)	531, 768, 938, 1144
BseRI	GAGGAG	1 cut(s)	290
BseXI	GCAGC	1 cut(s)	1179
BsgI	GTGCAG	1 cut(s)	941
Bsh1236I	CGCG	1 cut(s)	587
BshFI	GGCC	4 cut(s)	151, 257, 512, 567
BsiSI	CCGG	1 cut(s)	678
BslI	CCNNNNNNNGG	3 cut(s)	134, 206, 677
BsnI	GGCC	4 cut(s)	151, 257, 512, 567
Bsp1286I	GDGCHC	1 cut(s)	897
Bsp143I	GATC	4 cut(s)	93, 962, 1154, 1180
Bsp1720I	GCTNAGC	2 cut(s)	540, 797
Bsp19I	CCATGG	1 cut(s)	324
BspACI	CCGC	4 cut(s)	122, 396, 585, 746
BspANI	GGCC	4 cut(s)	151, 257, 512, 567
BspCNI	CTCAG	4 cut(s)	532, 810, 836, 1100
BspFNI	CGCG	1 cut(s)	587
BspLI	GGNNCC	4 cut(s)	198, 322, 418, 561
BspMI	ACCTGC	2 cut(s)	169, 244
BspPI	GGATC	2 cut(s)	88, 970
BsrDI	GCAATG	1 cut(s)	534
BsrFI	RCCGGY	1 cut(s)	677
BsrI	ACTGG	4 cut(s)	531, 768, 938, 1144
BssAI	RCCGGY	1 cut(s)	677
BssECI	CCNNGG	3 cut(s)	192, 324, 605
BssMI	GATC	4 cut(s)	93, 962, 1154, 1180
BssT1I	CCWWGG	3 cut(s)	192, 324, 605
Bst2UI	CCWGG	1 cut(s)	564
Bst4CI	ACNGT	6 cut(s)	285, 628, 656, 738, 848, 1108
BstC8I	GCNNGC	2 cut(s)	585, 1051
BstDEI	CTNAG	4 cut(s)	540, 797, 823, 1087
BstDSI	CCRYGG	1 cut(s)	324
BstF5I	GGATG	2 cut(s)	496, 931
BstFNI	CGCG	1 cut(s)	587
BstHHI	GCGC	1 cut(s)	589
BstKTI	GATC	4 cut(s)	96, 965, 1157, 1183
BstMBI	GATC	4 cut(s)	93, 962, 1154, 1180
BstMWI	GCNNNNNNNGC	4 cut(s)	236, 674, 883, 892
BstNI	CCWGG	1 cut(s)	564
BstNSI	RCATGY	1 cut(s)	431
BstSCI	CCNGG	1 cut(s)	562
BstUI	CGCG	1 cut(s)	587
BstV1I	GCAGC	1 cut(s)	1179
BsuI	GTATCC	2 cut(s)	523, 1091
BsuRI	GGCC	4 cut(s)	151, 257, 512, 567
BtgI	CCRYGG	1 cut(s)	324
BtgZI	GCGATG	1 cut(s)	986
BtrI	CACGTC	1 cut(s)	1147
BtsCI	GGATG	2 cut(s)	496, 931
BtsIMutI	CAGTG	2 cut(s)	524, 853
BveI	ACCTGC	2 cut(s)	169, 244
Cac8I	GCNNGC	2 cut(s)	585, 1051
CfoI	GCGC	1 cut(s)	589
Cfr10I	RCCGGY	1 cut(s)	677
Cfr13I	GGNCC	2 cut(s)	511, 851
Csp6I	GTAC	5 cut(s)	27, 286, 392, 844, 1000
CspCI	CAANNNNNGTGG	2 cut(s)	829, 864
CviAII	CATG	4 cut(s)	250, 259, 325, 428
CviQI	GTAC	5 cut(s)	27, 286, 392, 844, 1000
DdeI	CTNAG	4 cut(s)	540, 797, 823, 1087
DpnI	GATC	4 cut(s)	95, 964, 1156, 1182
DpnII	GATC	4 cut(s)	93, 962, 1154, 1180
DraIII	CACNNNGTG	1 cut(s)	983
Eco130I	CCWWGG	3 cut(s)	192, 324, 605
Eco147I	AGGCCT	1 cut(s)	567
Eco24I	GRGCYC	1 cut(s)	897
Eco47I	GGWCC	1 cut(s)	851
EcoRI	GAATTC	2 cut(s)	297, 1082
EcoRII	CCWGG	1 cut(s)	562
EcoT14I	CCWWGG	3 cut(s)	192, 324, 605
EcoT22I	ATGCAT	1 cut(s)	433
EcoT38I	GRGCYC	1 cut(s)	897
ErhI	CCWWGG	3 cut(s)	192, 324, 605
FaeI	CATG	4 cut(s)	253, 262, 328, 431
FalI	AAGNNNNNCTT	4 cut(s)	453, 485, 1107, 1139
FatI	CATG	4 cut(s)	249, 258, 324, 427
FauI	CCCGC	3 cut(s)	403, 592, 739
FauNDI	CATATG	1 cut(s)	781
Fnu4HI	GCNGC	1 cut(s)	1193
FokI	GGATG	2 cut(s)	503, 938
FriOI	GRGCYC	1 cut(s)	897
Fsp4HI	GCNGC	1 cut(s)	1193
FspBI	CTAG	4 cut(s)	828, 855, 866, 1187
GlaI	GCGC	1 cut(s)	588
GluI	GCNGC	1 cut(s)	1193
GsuI	CTGGAG	5 cut(s)	168, 293, 546, 566, 654
HaeIII	GGCC	4 cut(s)	151, 257, 512, 567
HapII	CCGG	1 cut(s)	678
HhaI	GCGC	1 cut(s)	589
Hin1II	CATG	4 cut(s)	253, 262, 328, 431
Hin6I	GCGC	1 cut(s)	587
HinP1I	GCGC	1 cut(s)	587
HincII	GTYRAC	2 cut(s)	51, 741
HindII	GTYRAC	2 cut(s)	51, 741
HinfI	GANTC	3 cut(s)	266, 374, 1150
HpaI	GTTAAC	1 cut(s)	741
HpaII	CCGG	1 cut(s)	678
HphI	GGTGA	4 cut(s)	150, 662, 695, 999
Hpy166II	GTNNAC	5 cut(s)	51, 392, 686, 741, 958
Hpy188I	TCNGA	2 cut(s)	838, 994
Hpy188III	TCNNGA	5 cut(s)	185, 272, 671, 866, 1178
Hpy8I	GTNNAC	5 cut(s)	51, 392, 686, 741, 958
Hpy99I	CGWCG	1 cut(s)	1148
HpyAV	CCTTC	5 cut(s)	247, 406, 640, 1070, 1166
HpyCH4III	ACNGT	6 cut(s)	285, 628, 656, 738, 848, 1108
HpyCH4IV	ACGT	1 cut(s)	1146
HpyF10VI	GCNNNNNNNGC	4 cut(s)	236, 674, 883, 892
HpyF3I	CTNAG	4 cut(s)	540, 797, 823, 1087
HpySE526I	ACGT	1 cut(s)	1146
Hsp92II	CATG	4 cut(s)	253, 262, 328, 431
HspAI	GCGC	1 cut(s)	587
KspAI	GTTAAC	1 cut(s)	741
Kzo9I	GATC	4 cut(s)	93, 962, 1154, 1180
LmnI	GCTCC	2 cut(s)	565, 673
Lsp1109I	GCAGC	1 cut(s)	1179
LweI	GCATC	3 cut(s)	440, 481, 527
MaeI	CTAG	4 cut(s)	828, 855, 866, 1187
MaeII	ACGT	1 cut(s)	1146
MaeIII	GTNAC	2 cut(s)	599, 650
MalI	GATC	4 cut(s)	95, 964, 1156, 1182
MboI	GATC	4 cut(s)	93, 962, 1154, 1180
MboII	GAAGA	5 cut(s)	108, 458, 513, 935, 1015
MhlI	GDGCHC	1 cut(s)	897
MlyI	GAGTC	1 cut(s)	368
Mph1103I	ATGCAT	1 cut(s)	433
MseI	TTAA	4 cut(s)	83, 221, 635, 740
MspA1I	CMGCKG	1 cut(s)	746
MspI	CCGG	1 cut(s)	678
MspR9I	CCNGG	1 cut(s)	564
MvaI	CCWGG	1 cut(s)	564
MvnI	CGCG	1 cut(s)	587
MwoI	GCNNNNNNNGC	4 cut(s)	236, 674, 883, 892
NcoI	CCATGG	1 cut(s)	324
NdeI	CATATG	1 cut(s)	781
NdeII	GATC	4 cut(s)	93, 962, 1154, 1180
NlaIII	CATG	4 cut(s)	253, 262, 328, 431
NlaIV	GGNNCC	4 cut(s)	198, 322, 418, 561
NmuCI	GTSAC	1 cut(s)	650
NsiI	ATGCAT	1 cut(s)	433
NspI	RCATGY	1 cut(s)	431
PaqCI	CACCTGC	1 cut(s)	169
PceI	AGGCCT	1 cut(s)	567
PfeI	GAWTC	2 cut(s)	266, 1150
PkrI	GCNGC	1 cut(s)	1194
PleI	GAGTC	1 cut(s)	368
PpsI	GAGTC	1 cut(s)	368
Psp6I	CCWGG	1 cut(s)	562
PspGI	CCWGG	1 cut(s)	562
PspN4I	GGNNCC	4 cut(s)	198, 322, 418, 561
PspPI	GGNCC	2 cut(s)	511, 851
RsaI	GTAC	5 cut(s)	28, 287, 393, 845, 1001
RsaNI	GTAC	5 cut(s)	27, 286, 392, 844, 1000
SaqAI	TTAA	4 cut(s)	83, 221, 635, 740
SatI	GCNGC	1 cut(s)	1193
Sau3AI	GATC	4 cut(s)	93, 962, 1154, 1180
Sau96I	GGNCC	2 cut(s)	511, 851
ScaI	AGTACT	2 cut(s)	28, 1001
SchI	GAGTC	1 cut(s)	368
ScrFI	CCNGG	1 cut(s)	564
SduI	GDGCHC	1 cut(s)	897
SfaNI	GCATC	3 cut(s)	440, 481, 527
SinI	GGWCC	1 cut(s)	851
SmlI	CTYRAG	1 cut(s)	403
SmoI	CTYRAG	1 cut(s)	403
SseBI	AGGCCT	1 cut(s)	567
SsiI	CCGC	4 cut(s)	122, 396, 585, 746
SspMI	CTAG	4 cut(s)	828, 855, 866, 1187
StuI	AGGCCT	1 cut(s)	567
StyD4I	CCNGG	1 cut(s)	562
StyI	CCWWGG	3 cut(s)	192, 324, 605
TaaI	ACNGT	6 cut(s)	285, 628, 656, 738, 848, 1108
TaiI	ACGT	1 cut(s)	1149
TaqI	TCGA	3 cut(s)	803, 1153, 1170
TatI	WGTACW	4 cut(s)	26, 285, 843, 999
TfiI	GAWTC	2 cut(s)	266, 1150
Tru1I	TTAA	4 cut(s)	83, 221, 635, 740
Tru9I	TTAA	4 cut(s)	83, 221, 635, 740
TscAI	CASTG	2 cut(s)	531, 853
TseFI	GTSAC	1 cut(s)	650
TseI	GCWGC	1 cut(s)	1192
Tsp45I	GTSAC	1 cut(s)	650
TspDTI	ATGAA	3 cut(s)	266, 381, 1089
TspGWI	ACGGA	1 cut(s)	975
TspRI	CASTG	2 cut(s)	531, 853
VpaK11BI	GGWCC	1 cut(s)	851
XapI	RAATTY	2 cut(s)	297, 1082
XbaI	TCTAGA	1 cut(s)	865
XceI	RCATGY	1 cut(s)	431
XcmI	CCANNNNNNNNNTGG	1 cut(s)	541
XspI	CTAG	4 cut(s)	828, 855, 866, 1187
ZrmI	AGTACT	2 cut(s)	28, 1001
Zsp2I	ATGCAT	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.