Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003839

Physical Location & Seq

Genomic Coordinates Forward (+)

64411307 .. 64417471

Gene Structure 6165 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00045420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1386 bp

ATGGCATTCCCTTTATCCTCCGCCACCATCTCTCACAACCTCTCCTTCAATGCCTCCATCGCTCCCTCCACTCGCAGGCTTAGTTTCGGACCAGCCCATTTCATATTCTGCTTCAACAGGATCGACCCACAAAAATTGGGCCGCTCCAGAGTCCATTGCATCTCCAACAAGAATCTATCAGAGGAGCTCGAAGACCAACGTAGTGCTCTTACCAATTCCTTCATGTCAACTAATGGATATAAAAAGAAACTTGAGAGTTTAATTGCTGTGATCCTTGTGGTTGTCCAAATATCCTCTCCGCTTCCGTTGGTTGGTTGGGAGTTTTGGCCTATATCACCTGCAAATGCGGTTCTTTATTCTCCAGACACTAAGGTTCCCAGAACAGGAGAGTTAGCTTTAAGGAGGGCTATACCTGCAAACACAAACATGAAGGCCATGCAGGATTCTCTGGAGGAGATACTTTACTTGCTGAGAATCCCACAGAGAAAGCCTTATGGAACCATGGAGGGGAATGTGAAAAAAGCTCTAAAGTTAGCAACAGATGAAAAGGACTCAATTTTGGCAAGTGTACCCACAGACTTGAGGGAGAAGGGTTCCACCTTATATGCATCTCTTATCGATGGAAAGAATGGATTGCAAGTTCTTCTTGGATATATAAAGGATAAGGATGCAGATAAAGTATCTGTGGCCCTTGCATCTTCACTGGATACTATAGCTGAGCTGGAGTTATTACAGGCTCCAGGCCTGTCATTCTTGTTGCCCGAGCCATACCAGAGATACCCAAGGCTTACAGGGAGAGGAACTGTTGAATTAACCATTGAGAAAGGTGACGGTTCAACATTTTCTCCAGAAGCTGGTGGTGAACCAAGAAAGACAGCCAGTATTCAGGTTGTTATAGATGGATATTCAGCACCATTAACAGCGGGTAATTTCGCAAAACTGGTAAGTGATGGGGCATACAATGGGGCAAAGCTCAGCTCGACCGACCAAGCTATTCTCTCAGATAGTGGTCTTGACAAGAACAGTGGTTCTAGTGTTCCTTTAGAAATCAAGCCATCTGGGCAATTTGAGCCCTTGTATAGAACAAAATTAGATGTCCAGGACGGGGAATTGCCAGTTCTCCCGCTATCTGTTTATGGATCAGTTGCTATGGCACATAGTGAAGACTCTGACGAGTACTCCTCACCATATCAGTTTTTCTTCTATCTTTATGATAAAAGAAATGCTGGCTTGGGAGGATTATCATTTGATGAAGGAGAATTTTCAGTTTTTGGATACACAACAGTTGGGAAAGATATTCTTTCACAGATAAAAACTGGAGATGTGATTCGATCTGCAAAGCTGGTCGAAGGTGAAGATCGTCTAGTGTTGCCAAATGAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0036211 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

461

Amino Acids

50.19

Weight (kDa)

5.52

Isoelectric Point (pI)

38.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CYP38_PsbQ-like	PF21329	133 - 242	1.7e-14	Peptidyl-prolyl cis-trans isomerase CYP38-like, PsbQ-like domain
Pro_isomerase	PF00160	294 - 446	1.7e-12	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003839)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15520 AT3G15520 AT3G15520 AT3G15520
fragaria_vesca	FvH4_3g20740 FvH4_3g20740 FvH4_3g20740 FvH4_3g20740 FvH4_3g20740 FvH4_3g20740 FvH4_3g20740 FvH4_3g20740 FvH4_3g20740
malus_domestica	MD03G1222300.v1.1
prunus_persica	Prupe.4G187400_v2.0.a1 Prupe.4G187400_v2.0.a1 Prupe.4G187400_v2.0.a1 Prupe.4G187400_v2.0.a1 Prupe.4G187400_v2.0.a1
pyrus_communis	pycom03g17090
rosa_chinensis	RchiOBHm_Chr5g0034911 RchiOBHm_Chr5g0034961
rosa_laevigata	RLG00000033585 RLG00000033588
rosa_multiflora	Rmu_co8461127.1_g000001 Rmu_sc0001580.1_g000024
rosa_roxburghii	Rroxscaffold_1G00045420
rosa_rugosa	Rorug05G0149100 Rorug05G0149100
rosa_samantha	Rh5AG242100 Rh5BG241700 Rh5CG273200 Rh5DG250300
rosa_wichuraiana	Rw5G022110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	346
Acc36I	ACCTGC	2 cut(s)	346, 421
AccB7I	CCANNNNNTGG	1 cut(s)	854
AccBSI	CCGCTC	1 cut(s)	144
AciI	CCGC	6 cut(s)	21, 142, 299, 347, 923, 1124
AclWI	GGATC	3 cut(s)	128, 265, 1147
AcsI	RAATTY	1 cut(s)	1259
AdeI	CACNNNGTG	1 cut(s)	1160
AfaI	GTAC	2 cut(s)	570, 1178
AfiI	CCNNNNNNNGG	6 cut(s)	75, 311, 383, 507, 854, 1105
AgsI	TTSAA	4 cut(s)	49, 115, 809, 837
AjnI	CCWGG	2 cut(s)	739, 1098
AloI	GAACNNNNNNTCC	2 cut(s)	624, 656
Alw21I	GWGCWC	2 cut(s)	189, 208
AlwI	GGATC	3 cut(s)	128, 265, 1147
AlwNI	CAGNNNCTG	1 cut(s)	854
Ama87I	CYCGRG	1 cut(s)	761
AoxI	GGCC	5 cut(s)	139, 326, 432, 687, 742
ApoI	RAATTY	1 cut(s)	1259
AspS9I	GGNCC	3 cut(s)	89, 139, 688
AsuHPI	GGTGA	5 cut(s)	327, 839, 872, 1176, 1364
AvaI	CYCGRG	1 cut(s)	761
AvaII	GGWCC	1 cut(s)	89
BanII	GRGCYC	2 cut(s)	189, 1074
BbsI	GAAGAC	2 cut(s)	198, 1170
Bbv12I	GWGCWC	2 cut(s)	189, 208
BccI	CCATC	6 cut(s)	35, 65, 614, 893, 944, 1063
BciT130I	CCWGG	2 cut(s)	741, 1100
BciVI	GTATCC	2 cut(s)	700, 1268
BfaI	CTAG	2 cut(s)	1032, 1364
BfmI	CTRYAG	1 cut(s)	711
BfuAI	ACCTGC	2 cut(s)	346, 421
BfuI	GTATCC	2 cut(s)	700, 1268
BglI	GCCNNNNNGGC	1 cut(s)	1060
BisI	GCNGC	1 cut(s)	142
BlpI	GCTNAGC	2 cut(s)	717, 974
BlsI	GCNGC	1 cut(s)	143
BmcAI	AGTACT	1 cut(s)	1178
Bme1390I	CCNGG	2 cut(s)	741, 1100
Bme18I	GGWCC	1 cut(s)	89
BmeT110I	CYCGRG	1 cut(s)	761
BmgT120I	GGNCC	3 cut(s)	89, 139, 688
BmiI	GGNNCC	4 cut(s)	375, 499, 595, 738
BmrFI	CCNGG	2 cut(s)	741, 1100
BmsI	GCATC	4 cut(s)	168, 617, 658, 704
BpiI	GAAGAC	2 cut(s)	198, 1170
BplI	GAGNNNNNCTC	2 cut(s)	1166, 1198
BpmI	CTGGAG	7 cut(s)	130, 345, 470, 723, 743, 831, 1338
Bpu1102I	GCTNAGC	2 cut(s)	717, 974
BpuEI	CTTGAG	2 cut(s)	272, 601
Bsa29I	ATCGAT	1 cut(s)	618
BsaJI	CCNNGG	2 cut(s)	501, 782
BsaXI	ACNNNNNCTCC	6 cut(s)	26, 56, 829, 859, 1163, 1193
Bsc4I	CCNNNNNNNGG	6 cut(s)	75, 311, 383, 507, 854, 1105
Bse1I	ACTGG	5 cut(s)	708, 879, 945, 1115, 1321
Bse3DI	GCAATG	1 cut(s)	154
BseBI	CCWGG	2 cut(s)	741, 1100
BseCI	ATCGAT	1 cut(s)	618
BseDI	CCNNGG	2 cut(s)	501, 782
BseGI	GGATG	1 cut(s)	673
BseLI	CCNNNNNNNGG	6 cut(s)	75, 311, 383, 507, 854, 1105
BseMI	GCAATG	1 cut(s)	154
BseMII	CTCAG	4 cut(s)	461, 708, 988, 1014
BseNI	ACTGG	5 cut(s)	708, 879, 945, 1115, 1321
BseRI	GAGGAG	3 cut(s)	197, 467, 1171
Bsh1285I	CGRYCG	1 cut(s)	984
BshFI	GGCC	5 cut(s)	141, 328, 434, 689, 744
BshVI	ATCGAT	1 cut(s)	618
BsiEI	CGRYCG	1 cut(s)	984
BsiHKAI	GWGCWC	2 cut(s)	189, 208
BsiHKCI	CYCGRG	1 cut(s)	761
BslI	CCNNNNNNNGG	6 cut(s)	75, 311, 383, 507, 854, 1105
BsmI	GAATGC	1 cut(s)	5
BsnI	GGCC	5 cut(s)	141, 328, 434, 689, 744
BsoBI	CYCGRG	1 cut(s)	761
Bsp1286I	GDGCHC	3 cut(s)	189, 208, 1074
Bsp143I	GATC	5 cut(s)	120, 270, 1139, 1331, 1357
Bsp1720I	GCTNAGC	2 cut(s)	717, 974
Bsp19I	CCATGG	1 cut(s)	501
BspACI	CCGC	6 cut(s)	21, 142, 299, 347, 923, 1124
BspANI	GGCC	5 cut(s)	141, 328, 434, 689, 744
BspCNI	CTCAG	4 cut(s)	462, 709, 987, 1013
BspDI	ATCGAT	1 cut(s)	618
BspLI	GGNNCC	4 cut(s)	375, 499, 595, 738
BspMI	ACCTGC	2 cut(s)	346, 421
BspPI	GGATC	3 cut(s)	128, 265, 1147
BsrBI	CCGCTC	1 cut(s)	144
BsrDI	GCAATG	1 cut(s)	154
BsrI	ACTGG	5 cut(s)	708, 879, 945, 1115, 1321
BssECI	CCNNGG	2 cut(s)	501, 782
BssMI	GATC	5 cut(s)	120, 270, 1139, 1331, 1357
BssT1I	CCWWGG	2 cut(s)	501, 782
Bst2UI	CCWGG	2 cut(s)	741, 1100
Bst4CI	ACNGT	4 cut(s)	805, 833, 1025, 1285
BstC8I	GCNNGC	2 cut(s)	77, 1228
BstDEI	CTNAG	6 cut(s)	80, 369, 470, 717, 974, 1000
BstDSI	CCRYGG	1 cut(s)	501
BstF5I	GGATG	1 cut(s)	673
BstKTI	GATC	5 cut(s)	123, 273, 1142, 1334, 1360
BstMBI	GATC	5 cut(s)	120, 270, 1139, 1331, 1357
BstMCI	CGRYCG	1 cut(s)	984
BstMWI	GCNNNNNNNGC	4 cut(s)	59, 413, 1060, 1069
BstNI	CCWGG	2 cut(s)	741, 1100
BstSCI	CCNGG	2 cut(s)	739, 1098
BstSFI	CTRYAG	1 cut(s)	711
BstV2I	GAAGAC	2 cut(s)	198, 1170
Bsu15I	ATCGAT	1 cut(s)	618
BsuI	GTATCC	2 cut(s)	700, 1268
BsuRI	GGCC	5 cut(s)	141, 328, 434, 689, 744
BsuTUI	ATCGAT	1 cut(s)	618
BtgI	CCRYGG	1 cut(s)	501
BtgZI	GCGATG	1 cut(s)	43
BtsCI	GGATG	1 cut(s)	673
BtsIMutI	CAGTG	2 cut(s)	701, 1030
BveI	ACCTGC	2 cut(s)	346, 421
Cac8I	GCNNGC	2 cut(s)	77, 1228
CaiI	CAGNNNCTG	1 cut(s)	854
Cfr13I	GGNCC	3 cut(s)	89, 139, 688
ClaI	ATCGAT	1 cut(s)	618
Csp6I	GTAC	2 cut(s)	569, 1177
CspCI	CAANNNNNGTGG	4 cut(s)	117, 152, 1006, 1041
CviAII	CATG	4 cut(s)	223, 427, 436, 502
CviQI	GTAC	2 cut(s)	569, 1177
DdeI	CTNAG	6 cut(s)	80, 369, 470, 717, 974, 1000
DpnI	GATC	5 cut(s)	122, 272, 1141, 1333, 1359
DpnII	GATC	5 cut(s)	120, 270, 1139, 1331, 1357
DraIII	CACNNNGTG	1 cut(s)	1160
EciI	GGCGGA	1 cut(s)	10
Ecl136II	GAGCTC	1 cut(s)	187
Eco130I	CCWWGG	2 cut(s)	501, 782
Eco147I	AGGCCT	1 cut(s)	744
Eco24I	GRGCYC	2 cut(s)	189, 1074
Eco47I	GGWCC	1 cut(s)	89
Eco53kI	GAGCTC	1 cut(s)	187
Eco88I	CYCGRG	1 cut(s)	761
EcoICRI	GAGCTC	1 cut(s)	187
EcoRII	CCWGG	2 cut(s)	739, 1098
EcoT14I	CCWWGG	2 cut(s)	501, 782
EcoT22I	ATGCAT	1 cut(s)	610
EcoT38I	GRGCYC	2 cut(s)	189, 1074
ErhI	CCWWGG	2 cut(s)	501, 782
FaeI	CATG	4 cut(s)	226, 430, 439, 505
FalI	AAGNNNNNCTT	4 cut(s)	630, 662, 1284, 1316
FatI	CATG	4 cut(s)	222, 426, 435, 501
FauI	CCCGC	2 cut(s)	916, 1131
Fnu4HI	GCNGC	1 cut(s)	142
FokI	GGATG	1 cut(s)	680
FriOI	GRGCYC	2 cut(s)	189, 1074
Fsp4HI	GCNGC	1 cut(s)	142
FspBI	CTAG	2 cut(s)	1032, 1364
GluI	GCNGC	1 cut(s)	142
GsuI	CTGGAG	7 cut(s)	130, 345, 470, 723, 743, 831, 1338
HaeIII	GGCC	5 cut(s)	141, 328, 434, 689, 744
Hin1II	CATG	4 cut(s)	226, 430, 439, 505
HincII	GTYRAC	1 cut(s)	228
HindII	GTYRAC	1 cut(s)	228
HinfI	GANTC	7 cut(s)	150, 172, 443, 474, 551, 1166, 1327
HphI	GGTGA	5 cut(s)	327, 839, 872, 1176, 1364
Hpy166II	GTNNAC	3 cut(s)	228, 569, 863
Hpy188I	TCNGA	4 cut(s)	89, 181, 1003, 1171
Hpy188III	TCNNGA	5 cut(s)	147, 362, 449, 848, 1013
Hpy8I	GTNNAC	3 cut(s)	228, 569, 863
HpyAV	CCTTC	6 cut(s)	55, 229, 424, 583, 1247, 1343
HpyCH4III	ACNGT	4 cut(s)	805, 833, 1025, 1285
HpyCH4IV	ACGT	1 cut(s)	199
HpyCH4V	TGCA	9 cut(s)	159, 341, 416, 439, 608, 637, 671, 695, 1337
HpyF10VI	GCNNNNNNNGC	4 cut(s)	59, 413, 1060, 1069
HpyF3I	CTNAG	6 cut(s)	80, 369, 470, 717, 974, 1000
HpySE526I	ACGT	1 cut(s)	199
Hsp92II	CATG	4 cut(s)	226, 430, 439, 505
Kzo9I	GATC	5 cut(s)	120, 270, 1139, 1331, 1357
LmnI	GCTCC	4 cut(s)	67, 149, 184, 742
LweI	GCATC	4 cut(s)	168, 617, 658, 704
MaeI	CTAG	2 cut(s)	1032, 1364
MaeII	ACGT	1 cut(s)	199
MaeIII	GTNAC	1 cut(s)	827
MalI	GATC	5 cut(s)	122, 272, 1141, 1333, 1359
MbiI	CCGCTC	1 cut(s)	144
MboI	GATC	5 cut(s)	120, 270, 1139, 1331, 1357
MboII	GAAGA	6 cut(s)	203, 635, 690, 1175, 1192, 1367
MhlI	GDGCHC	3 cut(s)	189, 208, 1074
MlyI	GAGTC	3 cut(s)	159, 545, 1160
MmeI	TCCRAC	1 cut(s)	189
Mph1103I	ATGCAT	1 cut(s)	610
MseI	TTAA	4 cut(s)	260, 398, 812, 917
MslI	CAYNNNNRTG	1 cut(s)	425
MspA1I	CMGCKG	1 cut(s)	923
MspR9I	CCNGG	2 cut(s)	741, 1100
Mva1269I	GAATGC	1 cut(s)	5
MvaI	CCWGG	2 cut(s)	741, 1100
MwoI	GCNNNNNNNGC	4 cut(s)	59, 413, 1060, 1069
NcoI	CCATGG	1 cut(s)	501
NdeII	GATC	5 cut(s)	120, 270, 1139, 1331, 1357
NlaIII	CATG	4 cut(s)	226, 430, 439, 505
NlaIV	GGNNCC	4 cut(s)	375, 499, 595, 738
NmuCI	GTSAC	1 cut(s)	827
NsiI	ATGCAT	1 cut(s)	610
PaqCI	CACCTGC	1 cut(s)	346
PceI	AGGCCT	1 cut(s)	744
PctI	GAATGC	1 cut(s)	5
PfeI	GAWTC	4 cut(s)	172, 443, 474, 1327
PflMI	CCANNNNNTGG	1 cut(s)	854
PfoI	TCCNGGA	1 cut(s)	1098
PkrI	GCNGC	1 cut(s)	143
PleI	GAGTC	3 cut(s)	158, 545, 1160
PpsI	GAGTC	3 cut(s)	158, 545, 1160
Psp124BI	GAGCTC	1 cut(s)	189
Psp6I	CCWGG	2 cut(s)	739, 1098
PspGI	CCWGG	2 cut(s)	739, 1098
PspN4I	GGNNCC	4 cut(s)	375, 499, 595, 738
PspPI	GGNCC	3 cut(s)	89, 139, 688
PstNI	CAGNNNCTG	1 cut(s)	854
RsaI	GTAC	2 cut(s)	570, 1178
RsaNI	GTAC	2 cut(s)	569, 1177
RseI	CAYNNNNRTG	1 cut(s)	425
SacI	GAGCTC	1 cut(s)	189
SaqAI	TTAA	4 cut(s)	260, 398, 812, 917
SatI	GCNGC	1 cut(s)	142
Sau3AI	GATC	5 cut(s)	120, 270, 1139, 1331, 1357
Sau96I	GGNCC	3 cut(s)	89, 139, 688
ScaI	AGTACT	1 cut(s)	1178
SchI	GAGTC	3 cut(s)	159, 545, 1160
ScrFI	CCNGG	2 cut(s)	741, 1100
SduI	GDGCHC	3 cut(s)	189, 208, 1074
SfaNI	GCATC	4 cut(s)	168, 617, 658, 704
SfcI	CTRYAG	1 cut(s)	711
SinI	GGWCC	1 cut(s)	89
SmiMI	CAYNNNNRTG	1 cut(s)	425
SmlI	CTYRAG	2 cut(s)	251, 580
SmoI	CTYRAG	2 cut(s)	251, 580
SseBI	AGGCCT	1 cut(s)	744
SsiI	CCGC	6 cut(s)	21, 142, 299, 347, 923, 1124
SspMI	CTAG	2 cut(s)	1032, 1364
SstI	GAGCTC	1 cut(s)	189
StuI	AGGCCT	1 cut(s)	744
StyD4I	CCNGG	2 cut(s)	739, 1098
StyI	CCWWGG	2 cut(s)	501, 782
TaaI	ACNGT	4 cut(s)	805, 833, 1025, 1285
TaiI	ACGT	1 cut(s)	202
TaqI	TCGA	6 cut(s)	123, 189, 618, 980, 1330, 1347
TaqII	GACCGA	1 cut(s)	998
TatI	WGTACW	1 cut(s)	1176
TauI	GCSGC	1 cut(s)	144
TfiI	GAWTC	4 cut(s)	172, 443, 474, 1327
Tru1I	TTAA	4 cut(s)	260, 398, 812, 917
Tru9I	TTAA	4 cut(s)	260, 398, 812, 917
TscAI	CASTG	2 cut(s)	708, 1030
TseFI	GTSAC	1 cut(s)	827
Tsp45I	GTSAC	1 cut(s)	827
TspDTI	ATGAA	5 cut(s)	91, 211, 443, 558, 1266
TspGWI	ACGGA	1 cut(s)	294
TspRI	CASTG	2 cut(s)	708, 1030
Van91I	CCANNNNNTGG	1 cut(s)	854
VpaK11BI	GGWCC	1 cut(s)	89
XapI	RAATTY	1 cut(s)	1259
XspI	CTAG	2 cut(s)	1032, 1364
ZrmI	AGTACT	1 cut(s)	1178
Zsp2I	ATGCAT	1 cut(s)	610

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.