Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003839

Physical Location & Seq

Genomic Coordinates Reverse (-)

29324541 .. 29329765

Gene Structure 5225 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033588

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGCAGGAACTCGAAGACCAACGTAGAGCTCTTACCAATTCCTACATGTCAACTAATGGATATAAAAAGAAACTTGAGAGTTTAATTGCTGTGATCCTTGTGGTTGTCCAAATATCCTCTCCCCTTCCTTTGGTTGGTTGGGAGTTTTGGCCTATATCACCTGCGAATGCGGTTCTTTATTCTCCAGACACCAAGGTTCCCAGAACAGGAGAGTTAGCTTTAAGGAGGGCTATACCTGCAAACACAAACATGAAGGCCATGCAGGATTCTCTGGAGGAGATACTTTACCTGCTGAGAATCCCACAGAGAAAGCCTTATGGAACCATGGAGGGGAATGTGAAAAAAGCTCTAACGATAGCAACAGATGAAAAGGACTCAATTTTGGCAAGTGTACCCACAAACTTGAGGGAGAAGGGTTCCACCTTATATGCATCTCTTATCGATGGAAAGAATGGATTACAAGTTCTTCTTGGATATATAAAGGATAAGGATGCAGATAAAGTATCTGTGGCCCTTGCATCTTCACTGGATACTATAGCTGAGCTGGAGTTATTACAGGCTCCAGGCCTGTCATTCTTGTTGCCCGAGCAATACCAGAGAGACCCAAGGCTTACAGGGAGAGGAACTGTTGAATTAACCATTGAGAAAGGTGACAATGGATATTCAGCACCATTAACAGTGGGTAATTTCGCAAAGCTGGTAAGTGATGGGGCATACAATGGGGCAAAGCTCAGCTCGACCGACCAAGCTATTCTCTCAGATAGTGGTCTTGACAAGAACAGTGGTTCTAGTGTTCCTTTAGAAATCAAGCCGTCTGGGCAATTTGAGCCCTTGTATAGAACAAAATTAGATGTCCAGGACGGGGAATTGCCAGTTCTTCCGCTATCTGTTTATGGATCAGTTGCTATGGCACATAGTGAAGACTCTGACGAGTACTCCTCACCGTATCAGTTTTTCTTCTATCTTTATGATAAAAGAAATGCTGGCTTGGGAGGATTATCATTTGATGAAGGAGAATTTTCAGTTTTTGGATACACAACAGTTGGGAAAGATATTCTTTCACAGATAAAAACTGGAGATGTGATTCGATCTGCAAAGCTGGTCGAAGGTGAAGATCGTCTAGTGTTGCCAAATGAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0036211 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

381

Amino Acids

41.53

Weight (kDa)

4.93

Isoelectric Point (pI)

35.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CYP38_PsbQ-like	PF21329	74 - 183	1.3e-14	Peptidyl-prolyl cis-trans isomerase CYP38-like, PsbQ-like domain
Pro_isomerase	PF00160	220 - 365	4.3e-11	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003839)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15520 AT3G15520 AT3G15520 AT3G15520
fragaria_vesca	FvH4_3g20740 FvH4_3g20740 FvH4_3g20740 FvH4_3g20740 FvH4_3g20740 FvH4_3g20740 FvH4_3g20740 FvH4_3g20740 FvH4_3g20740
malus_domestica	MD03G1222300.v1.1
prunus_persica	Prupe.4G187400_v2.0.a1 Prupe.4G187400_v2.0.a1 Prupe.4G187400_v2.0.a1 Prupe.4G187400_v2.0.a1 Prupe.4G187400_v2.0.a1
pyrus_communis	pycom03g17090
rosa_chinensis	RchiOBHm_Chr5g0034911 RchiOBHm_Chr5g0034961
rosa_laevigata	RLG00000033585 RLG00000033588
rosa_multiflora	Rmu_co8461127.1_g000001 Rmu_sc0001580.1_g000024
rosa_roxburghii	Rroxscaffold_1G00045420
rosa_rugosa	Rorug05G0149100 Rorug05G0149100
rosa_samantha	Rh5AG242100 Rh5BG241700 Rh5CG273200 Rh5DG250300
rosa_wichuraiana	Rw5G022110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	169
Acc36I	ACCTGC	3 cut(s)	169, 244, 297
AciI	CCGC	2 cut(s)	170, 881
AclWI	GGATC	2 cut(s)	88, 904
AcsI	RAATTY	1 cut(s)	1016
AdeI	CACNNNGTG	1 cut(s)	917
AfaI	GTAC	2 cut(s)	393, 935
AfiI	CCNNNNNNNGG	5 cut(s)	130, 134, 206, 330, 862
AflIII	ACRYGT	1 cut(s)	45
AgsI	TTSAA	1 cut(s)	632
AjnI	CCWGG	2 cut(s)	562, 855
AloI	GAACNNNNNNTCC	2 cut(s)	447, 479
Alw21I	GWGCWC	1 cut(s)	31
Alw26I	GTCTC	1 cut(s)	594
AlwI	GGATC	2 cut(s)	88, 904
Ama87I	CYCGRG	1 cut(s)	584
AoxI	GGCC	4 cut(s)	149, 255, 510, 565
ApoI	RAATTY	1 cut(s)	1016
AspS9I	GGNCC	1 cut(s)	511
AsuHPI	GGTGA	4 cut(s)	150, 662, 933, 1121
AvaI	CYCGRG	1 cut(s)	584
BanII	GRGCYC	2 cut(s)	31, 831
BbsI	GAAGAC	2 cut(s)	21, 927
Bbv12I	GWGCWC	1 cut(s)	31
BccI	CCATC	2 cut(s)	437, 701
BceAI	ACGGC	1 cut(s)	796
BciT130I	CCWGG	2 cut(s)	564, 857
BciVI	GTATCC	2 cut(s)	523, 1025
BcoDI	GTCTC	1 cut(s)	594
BfaI	CTAG	2 cut(s)	789, 1121
BfmI	CTRYAG	1 cut(s)	534
BfuAI	ACCTGC	3 cut(s)	169, 244, 297
BfuI	GTATCC	2 cut(s)	523, 1025
BglI	GCCNNNNNGGC	1 cut(s)	817
BlpI	GCTNAGC	2 cut(s)	540, 731
BmcAI	AGTACT	1 cut(s)	935
Bme1390I	CCNGG	2 cut(s)	564, 857
BmeT110I	CYCGRG	1 cut(s)	584
BmgT120I	GGNCC	1 cut(s)	511
BmiI	GGNNCC	4 cut(s)	198, 322, 418, 561
BmrFI	CCNGG	2 cut(s)	564, 857
BmsI	GCATC	3 cut(s)	440, 481, 527
BpiI	GAAGAC	2 cut(s)	21, 927
BplI	GAGNNNNNCTC	2 cut(s)	923, 955
BpmI	CTGGAG	5 cut(s)	168, 293, 546, 566, 1095
Bpu1102I	GCTNAGC	2 cut(s)	540, 731
BpuEI	CTTGAG	2 cut(s)	95, 424
Bsa29I	ATCGAT	1 cut(s)	441
BsaI	GGTCTC	1 cut(s)	594
BsaJI	CCNNGG	3 cut(s)	192, 324, 605
BsaXI	ACNNNNNCTCC	2 cut(s)	920, 950
Bsc4I	CCNNNNNNNGG	5 cut(s)	130, 134, 206, 330, 862
Bse1I	ACTGG	3 cut(s)	531, 872, 1078
BseBI	CCWGG	2 cut(s)	564, 857
BseCI	ATCGAT	1 cut(s)	441
BseDI	CCNNGG	3 cut(s)	192, 324, 605
BseGI	GGATG	1 cut(s)	496
BseLI	CCNNNNNNNGG	5 cut(s)	130, 134, 206, 330, 862
BseMII	CTCAG	4 cut(s)	284, 531, 745, 771
BseNI	ACTGG	3 cut(s)	531, 872, 1078
BseRI	GAGGAG	2 cut(s)	290, 928
Bsh1285I	CGRYCG	1 cut(s)	741
BshFI	GGCC	4 cut(s)	151, 257, 512, 567
BshVI	ATCGAT	1 cut(s)	441
BsiEI	CGRYCG	1 cut(s)	741
BsiHKAI	GWGCWC	1 cut(s)	31
BsiHKCI	CYCGRG	1 cut(s)	584
BslI	CCNNNNNNNGG	5 cut(s)	130, 134, 206, 330, 862
BsmAI	GTCTC	1 cut(s)	594
BsmI	GAATGC	1 cut(s)	172
BsnI	GGCC	4 cut(s)	151, 257, 512, 567
Bso31I	GGTCTC	1 cut(s)	594
BsoBI	CYCGRG	1 cut(s)	584
Bsp1286I	GDGCHC	2 cut(s)	31, 831
Bsp143I	GATC	4 cut(s)	93, 896, 1088, 1114
Bsp1720I	GCTNAGC	2 cut(s)	540, 731
Bsp19I	CCATGG	1 cut(s)	324
BspACI	CCGC	2 cut(s)	170, 881
BspANI	GGCC	4 cut(s)	151, 257, 512, 567
BspCNI	CTCAG	4 cut(s)	285, 532, 744, 770
BspDI	ATCGAT	1 cut(s)	441
BspLI	GGNNCC	4 cut(s)	198, 322, 418, 561
BspMI	ACCTGC	3 cut(s)	169, 244, 297
BspPI	GGATC	2 cut(s)	88, 904
BspTNI	GGTCTC	1 cut(s)	594
BsrI	ACTGG	3 cut(s)	531, 872, 1078
BssECI	CCNNGG	3 cut(s)	192, 324, 605
BssMI	GATC	4 cut(s)	93, 896, 1088, 1114
BssT1I	CCWWGG	3 cut(s)	192, 324, 605
Bst2UI	CCWGG	2 cut(s)	564, 857
Bst4CI	ACNGT	5 cut(s)	628, 679, 782, 945, 1042
BstC8I	GCNNGC	1 cut(s)	985
BstDEI	CTNAG	4 cut(s)	293, 540, 731, 757
BstDSI	CCRYGG	1 cut(s)	324
BstF5I	GGATG	1 cut(s)	496
BstKTI	GATC	4 cut(s)	96, 899, 1091, 1117
BstMAI	GTCTC	1 cut(s)	594
BstMBI	GATC	4 cut(s)	93, 896, 1088, 1114
BstMCI	CGRYCG	1 cut(s)	741
BstMWI	GCNNNNNNNGC	3 cut(s)	236, 817, 826
BstNI	CCWGG	2 cut(s)	564, 857
BstNSI	RCATGY	1 cut(s)	49
BstSCI	CCNGG	2 cut(s)	562, 855
BstSFI	CTRYAG	1 cut(s)	534
BstV2I	GAAGAC	2 cut(s)	21, 927
Bsu15I	ATCGAT	1 cut(s)	441
BsuI	GTATCC	2 cut(s)	523, 1025
BsuRI	GGCC	4 cut(s)	151, 257, 512, 567
BsuTUI	ATCGAT	1 cut(s)	441
BtgI	CCRYGG	1 cut(s)	324
BtsCI	GGATG	1 cut(s)	496
BtsIMutI	CAGTG	3 cut(s)	524, 684, 787
BveI	ACCTGC	3 cut(s)	169, 244, 297
Cac8I	GCNNGC	1 cut(s)	985
Cfr13I	GGNCC	1 cut(s)	511
ClaI	ATCGAT	1 cut(s)	441
Csp6I	GTAC	2 cut(s)	392, 934
CspCI	CAANNNNNGTGG	2 cut(s)	763, 798
CviAII	CATG	4 cut(s)	46, 250, 259, 325
CviQI	GTAC	2 cut(s)	392, 934
DdeI	CTNAG	4 cut(s)	293, 540, 731, 757
DpnI	GATC	4 cut(s)	95, 898, 1090, 1116
DpnII	GATC	4 cut(s)	93, 896, 1088, 1114
DraIII	CACNNNGTG	1 cut(s)	917
Ecl136II	GAGCTC	1 cut(s)	29
Eco130I	CCWWGG	3 cut(s)	192, 324, 605
Eco147I	AGGCCT	1 cut(s)	567
Eco24I	GRGCYC	2 cut(s)	31, 831
Eco31I	GGTCTC	1 cut(s)	594
Eco53kI	GAGCTC	1 cut(s)	29
Eco88I	CYCGRG	1 cut(s)	584
EcoICRI	GAGCTC	1 cut(s)	29
EcoRII	CCWGG	2 cut(s)	562, 855
EcoT14I	CCWWGG	3 cut(s)	192, 324, 605
EcoT22I	ATGCAT	1 cut(s)	433
EcoT38I	GRGCYC	2 cut(s)	31, 831
ErhI	CCWWGG	3 cut(s)	192, 324, 605
FaeI	CATG	4 cut(s)	49, 253, 262, 328
FalI	AAGNNNNNCTT	4 cut(s)	453, 485, 1041, 1073
FatI	CATG	4 cut(s)	45, 249, 258, 324
FokI	GGATG	1 cut(s)	503
FriOI	GRGCYC	2 cut(s)	31, 831
FspBI	CTAG	2 cut(s)	789, 1121
GsuI	CTGGAG	5 cut(s)	168, 293, 546, 566, 1095
HaeIII	GGCC	4 cut(s)	151, 257, 512, 567
Hin1II	CATG	4 cut(s)	49, 253, 262, 328
HincII	GTYRAC	1 cut(s)	51
HindII	GTYRAC	1 cut(s)	51
HinfI	GANTC	5 cut(s)	266, 297, 374, 923, 1084
HphI	GGTGA	4 cut(s)	150, 662, 933, 1121
Hpy166II	GTNNAC	2 cut(s)	51, 392
Hpy188I	TCNGA	2 cut(s)	760, 928
Hpy188III	TCNNGA	3 cut(s)	185, 272, 770
Hpy8I	GTNNAC	2 cut(s)	51, 392
HpyAV	CCTTC	5 cut(s)	134, 247, 406, 1004, 1100
HpyCH4III	ACNGT	5 cut(s)	628, 679, 782, 945, 1042
HpyCH4IV	ACGT	1 cut(s)	22
HpyCH4V	TGCA	7 cut(s)	4, 239, 262, 431, 494, 518, 1094
HpyF10VI	GCNNNNNNNGC	3 cut(s)	236, 817, 826
HpyF3I	CTNAG	4 cut(s)	293, 540, 731, 757
HpySE526I	ACGT	1 cut(s)	22
Hsp92II	CATG	4 cut(s)	49, 253, 262, 328
Kzo9I	GATC	4 cut(s)	93, 896, 1088, 1114
LmnI	GCTCC	1 cut(s)	565
LweI	GCATC	3 cut(s)	440, 481, 527
MaeI	CTAG	2 cut(s)	789, 1121
MaeII	ACGT	1 cut(s)	22
MaeIII	GTNAC	1 cut(s)	650
MalI	GATC	4 cut(s)	95, 898, 1090, 1116
MboI	GATC	4 cut(s)	93, 896, 1088, 1114
MboII	GAAGA	7 cut(s)	26, 458, 513, 869, 932, 949, 1124
MhlI	GDGCHC	2 cut(s)	31, 831
MluCI	AATT	9 cut(s)	37, 84, 378, 632, 685, 821, 845, 866, 1016
MlyI	GAGTC	2 cut(s)	368, 917
MnlI	CCTC	8 cut(s)	127, 219, 268, 322, 399, 614, 949, 986
Mph1103I	ATGCAT	1 cut(s)	433
MseI	TTAA	4 cut(s)	83, 221, 635, 674
MslI	CAYNNNNRTG	1 cut(s)	248
MspR9I	CCNGG	2 cut(s)	564, 857
Mva1269I	GAATGC	1 cut(s)	172
MvaI	CCWGG	2 cut(s)	564, 857
MwoI	GCNNNNNNNGC	3 cut(s)	236, 817, 826
NcoI	CCATGG	1 cut(s)	324
NdeII	GATC	4 cut(s)	93, 896, 1088, 1114
NlaIII	CATG	4 cut(s)	49, 253, 262, 328
NlaIV	GGNNCC	4 cut(s)	198, 322, 418, 561
NmuCI	GTSAC	1 cut(s)	650
NsiI	ATGCAT	1 cut(s)	433
NspI	RCATGY	1 cut(s)	49
PaqCI	CACCTGC	1 cut(s)	169
PceI	AGGCCT	1 cut(s)	567
PciI	ACATGT	1 cut(s)	45
PctI	GAATGC	1 cut(s)	172
PfeI	GAWTC	3 cut(s)	266, 297, 1084
PfoI	TCCNGGA	1 cut(s)	855
PleI	GAGTC	2 cut(s)	368, 917
PpsI	GAGTC	2 cut(s)	368, 917
PscI	ACATGT	1 cut(s)	45
Psp124BI	GAGCTC	1 cut(s)	31
Psp6I	CCWGG	2 cut(s)	562, 855
PspGI	CCWGG	2 cut(s)	562, 855
PspN4I	GGNNCC	4 cut(s)	198, 322, 418, 561
PspPI	GGNCC	1 cut(s)	511
RsaI	GTAC	2 cut(s)	393, 935
RsaNI	GTAC	2 cut(s)	392, 934
RseI	CAYNNNNRTG	1 cut(s)	248
SacI	GAGCTC	1 cut(s)	31
SaqAI	TTAA	4 cut(s)	83, 221, 635, 674
Sau3AI	GATC	4 cut(s)	93, 896, 1088, 1114
Sau96I	GGNCC	1 cut(s)	511
ScaI	AGTACT	1 cut(s)	935
SchI	GAGTC	2 cut(s)	368, 917
ScrFI	CCNGG	2 cut(s)	564, 857
SduI	GDGCHC	2 cut(s)	31, 831
SfaNI	GCATC	3 cut(s)	440, 481, 527
SfcI	CTRYAG	1 cut(s)	534
SmiMI	CAYNNNNRTG	1 cut(s)	248
SmlI	CTYRAG	2 cut(s)	74, 403
SmoI	CTYRAG	2 cut(s)	74, 403
Sse9I	AATT	9 cut(s)	37, 84, 378, 632, 685, 821, 845, 866, 1016
SseBI	AGGCCT	1 cut(s)	567
SsiI	CCGC	2 cut(s)	170, 881
SspMI	CTAG	2 cut(s)	789, 1121
SstI	GAGCTC	1 cut(s)	31
StuI	AGGCCT	1 cut(s)	567
StyD4I	CCNGG	2 cut(s)	562, 855
StyI	CCWWGG	3 cut(s)	192, 324, 605
TaaI	ACNGT	5 cut(s)	628, 679, 782, 945, 1042
TaiI	ACGT	1 cut(s)	25
TaqI	TCGA	5 cut(s)	12, 441, 737, 1087, 1104
TaqII	GACCGA	1 cut(s)	755
TasI	AATT	9 cut(s)	37, 84, 378, 632, 685, 821, 845, 866, 1016
TatI	WGTACW	1 cut(s)	933
TfiI	GAWTC	3 cut(s)	266, 297, 1084
Tru1I	TTAA	4 cut(s)	83, 221, 635, 674
Tru9I	TTAA	4 cut(s)	83, 221, 635, 674
TscAI	CASTG	3 cut(s)	531, 684, 787
TseFI	GTSAC	1 cut(s)	650
Tsp45I	GTSAC	1 cut(s)	650
TspDTI	ATGAA	3 cut(s)	266, 381, 1023
TspRI	CASTG	3 cut(s)	531, 684, 787
XapI	RAATTY	1 cut(s)	1016
XceI	RCATGY	1 cut(s)	49
XspI	CTAG	2 cut(s)	789, 1121
ZrmI	AGTACT	1 cut(s)	935
Zsp2I	ATGCAT	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.