Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003839

Physical Location & Seq

Genomic Coordinates Reverse (-)

29175972 .. 29182020

Gene Structure 6049 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG241700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGCATTCCCTTTATCCTCCGCCACTATCTCTCACAACCTCTCCTTCAATGCCTCCACTCGCAGGCTTAGTTTCAGACCAGCCCATTTCATATTCTGCTTCAACAGGATCGACCCACAAAAATTGGGCCGCTCCAGAGTCCACTGCATCTCCAACAAGAATCTATCAGAGGGACTCGAAGACCAACGTAGTACTCTTACCAATTCCTACATGTCAACTAATGGATGTAAAAAGAAACTTGAGAGTTTAATTGCTGTGATCCTTGTGGTTGTCCAAATATCCTCTCCGCTTCCTTTGGTTGGTTGGGAGTTTTGGCCTATATCACCTGCGAACGCGGTTCTTTATTCTCCAGACACTAAGGTTCCCAGAACAGGAGAGTTGGCTTTAAGGAGGGCTATACCTGCAAACACAAACATGAAGGCCATGCAGGATTCTCTGGAGGAGATACTTTACTTGCTGAGAATCCCACAGAGAAAGCCTTATGGAACCATGGAGGGGAATGTGAAAAAAGCTCTAAAGATAGCAACAGATCAAAAGGACTCAATTTTGGCAAGTGTACCCACAGACTTGAGGGAGAAGGCTTCCACCTTACATGCATCTCTTATCGATGGAAAGAATGGATTGCAAGTTCTTCTTGGATATATAAAGGATAAGGATGCAGATAAAGTATCTGTGGCCCTTGCATCTTCACTGGATACCATTGCTGAGCTTGAGTTATTACAGGCTCCAGGCCTGTCATTCTTGTTACCTGAGCAATACCAGAGATACCCAAGGCTTACAGGGAGAGGAACTGTTGAATTAACCATTGAGAAAGGTGACGGTTCAACATTTTCTCCAGAAGCTGGTGGTGAACCAAGAAAGACAGCCAGTATTCAGGTTGTTATAGATGGATATTCAGCACCATTAACGGCGGGTAATTTCGCAAAACTGGTAAGTGATGGGGCATACAATGGGGCAATGCTCAGCTCGACCGACCAAGCTATTCTCTCAGATAGTGGTCTTGACAAGAACAGTGGTTCTAGTGTTCCTTTAGAAATCAAGCCATCTGGGCAATTTGAGCCCTTGTATAGAACAAAATTAGATGTCCAGGTATGCTTATGCTTTATGCCATTACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0036211 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

372

Amino Acids

40.54

Weight (kDa)

8.66

Isoelectric Point (pI)

38.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CYP38_PsbQ-like	PF21329	129 - 238	4.3e-15	Peptidyl-prolyl cis-trans isomerase CYP38-like, PsbQ-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003839)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15520 AT3G15520 AT3G15520 AT3G15520
fragaria_vesca	FvH4_3g20740 FvH4_3g20740 FvH4_3g20740 FvH4_3g20740 FvH4_3g20740 FvH4_3g20740 FvH4_3g20740 FvH4_3g20740 FvH4_3g20740
malus_domestica	MD03G1222300.v1.1
prunus_persica	Prupe.4G187400_v2.0.a1 Prupe.4G187400_v2.0.a1 Prupe.4G187400_v2.0.a1 Prupe.4G187400_v2.0.a1 Prupe.4G187400_v2.0.a1
pyrus_communis	pycom03g17090
rosa_chinensis	RchiOBHm_Chr5g0034911 RchiOBHm_Chr5g0034961
rosa_laevigata	RLG00000033585 RLG00000033588
rosa_multiflora	Rmu_co8461127.1_g000001 Rmu_sc0001580.1_g000024
rosa_roxburghii	Rroxscaffold_1G00045420
rosa_rugosa	Rorug05G0149100 Rorug05G0149100
rosa_samantha	Rh5AG242100 Rh5BG241700 Rh5CG273200 Rh5DG250300
rosa_wichuraiana	Rw5G022110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	334
Acc36I	ACCTGC	2 cut(s)	334, 409
AccB7I	CCANNNNNTGG	1 cut(s)	842
AccBSI	CCGCTC	1 cut(s)	132
AccII	CGCG	1 cut(s)	335
AciI	CCGC	5 cut(s)	21, 130, 287, 335, 911
AclWI	GGATC	2 cut(s)	116, 253
AfaI	GTAC	2 cut(s)	193, 558
AfiI	CCNNNNNNNGG	5 cut(s)	63, 299, 371, 495, 842
AflIII	ACRYGT	1 cut(s)	210
AgsI	TTSAA	4 cut(s)	49, 103, 797, 825
AjnI	CCWGG	2 cut(s)	727, 1086
AloI	GAACNNNNNNTCC	2 cut(s)	612, 644
AluBI	AGCT	5 cut(s)	512, 709, 842, 966, 980
AluI	AGCT	5 cut(s)	512, 709, 842, 966, 980
AlwI	GGATC	2 cut(s)	116, 253
AlwNI	CAGNNNCTG	1 cut(s)	842
AoxI	GGCC	5 cut(s)	127, 314, 420, 675, 730
AspS9I	GGNCC	2 cut(s)	127, 676
AsuHPI	GGTGA	3 cut(s)	315, 827, 860
BanII	GRGCYC	1 cut(s)	1062
BbsI	GAAGAC	1 cut(s)	186
BccI	CCATC	4 cut(s)	602, 881, 932, 1051
BceAI	ACGGC	1 cut(s)	924
BciT130I	CCWGG	2 cut(s)	729, 1088
BciVI	GTATCC	1 cut(s)	688
BfaI	CTAG	1 cut(s)	1020
BfuAI	ACCTGC	2 cut(s)	334, 409
BfuI	GTATCC	1 cut(s)	688
BglI	GCCNNNNNGGC	1 cut(s)	1048
BisI	GCNGC	1 cut(s)	130
BlpI	GCTNAGC	2 cut(s)	705, 962
BlsI	GCNGC	1 cut(s)	131
BmcAI	AGTACT	1 cut(s)	193
Bme1390I	CCNGG	2 cut(s)	729, 1088
BmgT120I	GGNCC	2 cut(s)	127, 676
BmiI	GGNNCC	3 cut(s)	363, 487, 726
BmrFI	CCNGG	2 cut(s)	729, 1088
BmsI	GCATC	4 cut(s)	156, 605, 646, 692
BpiI	GAAGAC	1 cut(s)	186
BpmI	CTGGAG	5 cut(s)	118, 333, 458, 711, 819
Bpu10I	CCTNAGC	1 cut(s)	750
Bpu1102I	GCTNAGC	2 cut(s)	705, 962
BpuEI	CTTGAG	3 cut(s)	260, 589, 731
Bsa29I	ATCGAT	1 cut(s)	606
BsaJI	CCNNGG	2 cut(s)	489, 770
BsaXI	ACNNNNNCTCC	6 cut(s)	26, 56, 134, 164, 817, 847
Bsc4I	CCNNNNNNNGG	5 cut(s)	63, 299, 371, 495, 842
Bse1I	ACTGG	3 cut(s)	696, 867, 933
Bse3DI	GCAATG	2 cut(s)	699, 963
BseBI	CCWGG	2 cut(s)	729, 1088
BseCI	ATCGAT	1 cut(s)	606
BseDI	CCNNGG	2 cut(s)	489, 770
BseGI	GGATG	2 cut(s)	230, 661
BseLI	CCNNNNNNNGG	5 cut(s)	63, 299, 371, 495, 842
BseMI	GCAATG	2 cut(s)	699, 963
BseMII	CTCAG	5 cut(s)	449, 696, 741, 976, 1002
BseNI	ACTGG	3 cut(s)	696, 867, 933
BseRI	GAGGAG	1 cut(s)	455
Bsh1236I	CGCG	1 cut(s)	335
Bsh1285I	CGRYCG	1 cut(s)	972
BshFI	GGCC	5 cut(s)	129, 316, 422, 677, 732
BshVI	ATCGAT	1 cut(s)	606
BsiEI	CGRYCG	1 cut(s)	972
BslFI	GGGAC	1 cut(s)	186
BslI	CCNNNNNNNGG	5 cut(s)	63, 299, 371, 495, 842
BsmFI	GGGAC	1 cut(s)	186
BsmI	GAATGC	1 cut(s)	5
BsnI	GGCC	5 cut(s)	129, 316, 422, 677, 732
Bsp1286I	GDGCHC	1 cut(s)	1062
Bsp143I	GATC	3 cut(s)	108, 258, 529
Bsp1720I	GCTNAGC	2 cut(s)	705, 962
Bsp19I	CCATGG	1 cut(s)	489
BspACI	CCGC	5 cut(s)	21, 130, 287, 335, 911
BspANI	GGCC	5 cut(s)	129, 316, 422, 677, 732
BspCNI	CTCAG	5 cut(s)	450, 697, 742, 975, 1001
BspDI	ATCGAT	1 cut(s)	606
BspFNI	CGCG	1 cut(s)	335
BspLI	GGNNCC	3 cut(s)	363, 487, 726
BspMI	ACCTGC	2 cut(s)	334, 409
BspPI	GGATC	2 cut(s)	116, 253
BsrBI	CCGCTC	1 cut(s)	132
BsrDI	GCAATG	2 cut(s)	699, 963
BsrI	ACTGG	3 cut(s)	696, 867, 933
BssECI	CCNNGG	2 cut(s)	489, 770
BssMI	GATC	3 cut(s)	108, 258, 529
BssT1I	CCWWGG	2 cut(s)	489, 770
Bst2UI	CCWGG	2 cut(s)	729, 1088
Bst4CI	ACNGT	3 cut(s)	793, 821, 1013
BstC8I	GCNNGC	1 cut(s)	65
BstDEI	CTNAG	7 cut(s)	68, 357, 458, 705, 750, 962, 988
BstDSI	CCRYGG	1 cut(s)	489
BstF5I	GGATG	2 cut(s)	230, 661
BstFNI	CGCG	1 cut(s)	335
BstKTI	GATC	3 cut(s)	111, 261, 532
BstMBI	GATC	3 cut(s)	108, 258, 529
BstMCI	CGRYCG	1 cut(s)	972
BstMWI	GCNNNNNNNGC	3 cut(s)	401, 1048, 1057
BstNI	CCWGG	2 cut(s)	729, 1088
BstNSI	RCATGY	2 cut(s)	214, 596
BstSCI	CCNGG	2 cut(s)	727, 1086
BstUI	CGCG	1 cut(s)	335
BstV2I	GAAGAC	1 cut(s)	186
Bsu15I	ATCGAT	1 cut(s)	606
BsuI	GTATCC	1 cut(s)	688
BsuRI	GGCC	5 cut(s)	129, 316, 422, 677, 732
BsuTUI	ATCGAT	1 cut(s)	606
BtgI	CCRYGG	1 cut(s)	489
BtsCI	GGATG	2 cut(s)	230, 661
BtsI	GCAGTG	1 cut(s)	142
BtsIMutI	CAGTG	3 cut(s)	142, 689, 1018
BveI	ACCTGC	2 cut(s)	334, 409
Cac8I	GCNNGC	1 cut(s)	65
CaiI	CAGNNNCTG	1 cut(s)	842
Cfr13I	GGNCC	2 cut(s)	127, 676
ClaI	ATCGAT	1 cut(s)	606
Csp6I	GTAC	2 cut(s)	192, 557
CspCI	CAANNNNNGTGG	4 cut(s)	105, 140, 994, 1029
CviAII	CATG	5 cut(s)	211, 415, 424, 490, 593
CviQI	GTAC	2 cut(s)	192, 557
DdeI	CTNAG	7 cut(s)	68, 357, 458, 705, 750, 962, 988
DpnI	GATC	3 cut(s)	110, 260, 531
DpnII	GATC	3 cut(s)	108, 258, 529
EciI	GGCGGA	1 cut(s)	10
Eco130I	CCWWGG	2 cut(s)	489, 770
Eco147I	AGGCCT	1 cut(s)	732
Eco24I	GRGCYC	1 cut(s)	1062
EcoRII	CCWGG	2 cut(s)	727, 1086
EcoT14I	CCWWGG	2 cut(s)	489, 770
EcoT22I	ATGCAT	1 cut(s)	598
EcoT38I	GRGCYC	1 cut(s)	1062
ErhI	CCWWGG	2 cut(s)	489, 770
FaeI	CATG	5 cut(s)	214, 418, 427, 493, 596
FalI	AAGNNNNNCTT	2 cut(s)	618, 650
FaqI	GGGAC	1 cut(s)	186
FatI	CATG	5 cut(s)	210, 414, 423, 489, 592
FauI	CCCGC	1 cut(s)	904
Fnu4HI	GCNGC	1 cut(s)	130
FokI	GGATG	2 cut(s)	237, 668
FriOI	GRGCYC	1 cut(s)	1062
Fsp4HI	GCNGC	1 cut(s)	130
FspBI	CTAG	1 cut(s)	1020
GluI	GCNGC	1 cut(s)	130
GsuI	CTGGAG	5 cut(s)	118, 333, 458, 711, 819
HaeIII	GGCC	5 cut(s)	129, 316, 422, 677, 732
Hin1II	CATG	5 cut(s)	214, 418, 427, 493, 596
HincII	GTYRAC	1 cut(s)	216
HindII	GTYRAC	1 cut(s)	216
HinfI	GANTC	6 cut(s)	138, 160, 174, 431, 462, 539
HphI	GGTGA	3 cut(s)	315, 827, 860
Hpy166II	GTNNAC	4 cut(s)	142, 216, 557, 851
Hpy188I	TCNGA	3 cut(s)	77, 169, 991
Hpy188III	TCNNGA	5 cut(s)	135, 350, 437, 836, 1001
Hpy8I	GTNNAC	4 cut(s)	142, 216, 557, 851
HpyAV	CCTTC	3 cut(s)	55, 412, 571
HpyCH4III	ACNGT	3 cut(s)	793, 821, 1013
HpyCH4IV	ACGT	1 cut(s)	187
HpyCH4V	TGCA	7 cut(s)	147, 404, 427, 596, 625, 659, 683
HpyF10VI	GCNNNNNNNGC	3 cut(s)	401, 1048, 1057
HpyF3I	CTNAG	7 cut(s)	68, 357, 458, 705, 750, 962, 988
HpySE526I	ACGT	1 cut(s)	187
Hsp92II	CATG	5 cut(s)	214, 418, 427, 493, 596
Kzo9I	GATC	3 cut(s)	108, 258, 529
LmnI	GCTCC	2 cut(s)	137, 730
LweI	GCATC	4 cut(s)	156, 605, 646, 692
MaeI	CTAG	1 cut(s)	1020
MaeII	ACGT	1 cut(s)	187
MaeIII	GTNAC	2 cut(s)	744, 815
MalI	GATC	3 cut(s)	110, 260, 531
MbiI	CCGCTC	1 cut(s)	132
MboI	GATC	3 cut(s)	108, 258, 529
MboII	GAAGA	3 cut(s)	191, 623, 678
MhlI	GDGCHC	1 cut(s)	1062
MluCI	AATT	8 cut(s)	122, 202, 249, 543, 797, 916, 1052, 1076
MlyI	GAGTC	3 cut(s)	147, 168, 533
MmeI	TCCRAC	1 cut(s)	177
Mph1103I	ATGCAT	1 cut(s)	598
MseI	TTAA	4 cut(s)	248, 386, 800, 905
MslI	CAYNNNNRTG	1 cut(s)	413
MspR9I	CCNGG	2 cut(s)	729, 1088
Mva1269I	GAATGC	1 cut(s)	5
MvaI	CCWGG	2 cut(s)	729, 1088
MvnI	CGCG	1 cut(s)	335
MwoI	GCNNNNNNNGC	3 cut(s)	401, 1048, 1057
NcoI	CCATGG	1 cut(s)	489
NdeII	GATC	3 cut(s)	108, 258, 529
NlaIII	CATG	5 cut(s)	214, 418, 427, 493, 596
NlaIV	GGNNCC	3 cut(s)	363, 487, 726
NmuCI	GTSAC	1 cut(s)	815
NsiI	ATGCAT	1 cut(s)	598
NspI	RCATGY	2 cut(s)	214, 596
PaqCI	CACCTGC	1 cut(s)	334
PceI	AGGCCT	1 cut(s)	732
PciI	ACATGT	1 cut(s)	210
PctI	GAATGC	1 cut(s)	5
PfeI	GAWTC	3 cut(s)	160, 431, 462
PflMI	CCANNNNNTGG	1 cut(s)	842
PkrI	GCNGC	1 cut(s)	131
PleI	GAGTC	3 cut(s)	146, 168, 533
PpsI	GAGTC	3 cut(s)	146, 168, 533
PscI	ACATGT	1 cut(s)	210
Psp6I	CCWGG	2 cut(s)	727, 1086
PspGI	CCWGG	2 cut(s)	727, 1086
PspN4I	GGNNCC	3 cut(s)	363, 487, 726
PspPI	GGNCC	2 cut(s)	127, 676
PstNI	CAGNNNCTG	1 cut(s)	842
RsaI	GTAC	2 cut(s)	193, 558
RsaNI	GTAC	2 cut(s)	192, 557
RseI	CAYNNNNRTG	1 cut(s)	413
SaqAI	TTAA	4 cut(s)	248, 386, 800, 905
SatI	GCNGC	1 cut(s)	130
Sau3AI	GATC	3 cut(s)	108, 258, 529
Sau96I	GGNCC	2 cut(s)	127, 676
ScaI	AGTACT	1 cut(s)	193
SchI	GAGTC	3 cut(s)	147, 168, 533
ScrFI	CCNGG	2 cut(s)	729, 1088
SduI	GDGCHC	1 cut(s)	1062
SfaNI	GCATC	4 cut(s)	156, 605, 646, 692
SmiMI	CAYNNNNRTG	1 cut(s)	413
SmlI	CTYRAG	3 cut(s)	239, 568, 710
SmoI	CTYRAG	3 cut(s)	239, 568, 710
Sse9I	AATT	8 cut(s)	122, 202, 249, 543, 797, 916, 1052, 1076
SseBI	AGGCCT	1 cut(s)	732
SsiI	CCGC	5 cut(s)	21, 130, 287, 335, 911
SspMI	CTAG	1 cut(s)	1020
StuI	AGGCCT	1 cut(s)	732
StyD4I	CCNGG	2 cut(s)	727, 1086
StyI	CCWWGG	2 cut(s)	489, 770
TaaI	ACNGT	3 cut(s)	793, 821, 1013
TaiI	ACGT	1 cut(s)	190
TaqI	TCGA	4 cut(s)	111, 177, 606, 968
TaqII	GACCGA	1 cut(s)	986
TasI	AATT	8 cut(s)	122, 202, 249, 543, 797, 916, 1052, 1076
TatI	WGTACW	1 cut(s)	191
TauI	GCSGC	1 cut(s)	132
TfiI	GAWTC	3 cut(s)	160, 431, 462
Tru1I	TTAA	4 cut(s)	248, 386, 800, 905
Tru9I	TTAA	4 cut(s)	248, 386, 800, 905
TscAI	CASTG	3 cut(s)	149, 696, 1018
TseFI	GTSAC	1 cut(s)	815
Tsp45I	GTSAC	1 cut(s)	815
TspDTI	ATGAA	2 cut(s)	79, 431
TspRI	CASTG	3 cut(s)	149, 696, 1018
Van91I	CCANNNNNTGG	1 cut(s)	842
XceI	RCATGY	2 cut(s)	214, 596
XspI	CTAG	1 cut(s)	1020
ZrmI	AGTACT	1 cut(s)	193
Zsp2I	ATGCAT	1 cut(s)	598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.