Rh5BG266200

Pollen proteins Ole e I like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0024999
Physical Location & Seq
Forward (+)
33283051 .. 33283816
766 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG266200.1

Sequence Viewer

Length: 213 bp
ATGGAAGCAGAGATGAACAAGAAGAAGCCGGCGCTGGGCCTTGTCATCTTTACCGTCTTCATTTCCGGTATTGGAGCTTGGACCGGTGAAATCCACGGCAGAGTTATCTGTGATGTTTGTGGCGACTCCGCCCTCGGACCTGAAGATCATGTTCTAGAAGCATGGGGTAAAAACAACCCAGAAAAAAAGAAACAGATGAATGAAACTTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

70

Amino Acids

7.64

Weight (kDa)

5.57

Isoelectric Point (pI)

24.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0024999)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0038871
rosa_samantha Rh5BG266200
rosa_wichuraiana Rw5G024430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 129
AcuI CTGAAG 1 cut(s) 162
AfiI CCNNNNNNNGG 1 cut(s) 35
AgeI ACCGGT 1 cut(s) 83
AluBI AGCT 1 cut(s) 77
AluI AGCT 1 cut(s) 77
AoxI GGCC 1 cut(s) 37
AsiGI ACCGGT 1 cut(s) 83
AspLEI GCGC 1 cut(s) 34
AspS9I GGNCC 3 cut(s) 37, 81, 137
AsuHPI GGTGA 1 cut(s) 98
AvaII GGWCC 2 cut(s) 81, 137
BbsI GAAGAC 1 cut(s) 49
BceAI ACGGC 1 cut(s) 112
BfaI CTAG 2 cut(s) 155, 211
BfoI RGCGCY 1 cut(s) 35
Bme18I GGWCC 2 cut(s) 81, 137
BmgT120I GGNCC 3 cut(s) 37, 81, 137
BpiI GAAGAC 1 cut(s) 49
BsaJI CCNNGG 2 cut(s) 94, 133
BsaWI WCCGGW 2 cut(s) 65, 83
Bsc4I CCNNNNNNNGG 1 cut(s) 35
Bse118I RCCGGY 2 cut(s) 28, 83
BseDI CCNNGG 2 cut(s) 94, 133
BseLI CCNNNNNNNGG 1 cut(s) 35
BseYI CCCAGC 1 cut(s) 34
BshFI GGCC 1 cut(s) 39
BshTI ACCGGT 1 cut(s) 83
BsiSI CCGG 3 cut(s) 29, 66, 84
BslI CCNNNNNNNGG 1 cut(s) 35
BsnI GGCC 1 cut(s) 39
Bsp143I GATC 1 cut(s) 145
BspACI CCGC 1 cut(s) 129
BspANI GGCC 1 cut(s) 39
BsrFI RCCGGY 2 cut(s) 28, 83
BssAI RCCGGY 2 cut(s) 28, 83
BssECI CCNNGG 2 cut(s) 94, 133
BssMI GATC 1 cut(s) 145
Bst4CI ACNGT 1 cut(s) 55
BstC8I GCNNGC 1 cut(s) 30
BstDSI CCRYGG 1 cut(s) 94
BstH2I RGCGCY 1 cut(s) 35
BstHHI GCGC 1 cut(s) 34
BstKTI GATC 1 cut(s) 148
BstMBI GATC 1 cut(s) 145
BstV2I GAAGAC 1 cut(s) 49
BsuRI GGCC 1 cut(s) 39
BtgI CCRYGG 1 cut(s) 94
Cac8I GCNNGC 1 cut(s) 30
CfoI GCGC 1 cut(s) 34
Cfr10I RCCGGY 2 cut(s) 28, 83
Cfr13I GGNCC 3 cut(s) 37, 81, 137
CspAI ACCGGT 1 cut(s) 83
CviAII CATG 2 cut(s) 149, 162
CviJI RGCY 3 cut(s) 28, 39, 77
CviKI_1 RGCY 3 cut(s) 28, 39, 77
DpnI GATC 1 cut(s) 147
DpnII GATC 1 cut(s) 145
EciI GGCGGA 1 cut(s) 118
Eco47I GGWCC 2 cut(s) 81, 137
Eco57I CTGAAG 1 cut(s) 162
FaeI CATG 2 cut(s) 152, 165
FaiI YATR 2 cut(s) 150, 163
FatI CATG 2 cut(s) 148, 161
FspBI CTAG 2 cut(s) 155, 211
GlaI GCGC 1 cut(s) 33
GsaI CCCAGC 1 cut(s) 38
HaeII RGCGCY 1 cut(s) 35
HaeIII GGCC 1 cut(s) 39
HapII CCGG 3 cut(s) 29, 66, 84
HhaI GCGC 1 cut(s) 34
Hin1II CATG 2 cut(s) 152, 165
Hin6I GCGC 1 cut(s) 32
HinP1I GCGC 1 cut(s) 32
HinfI GANTC 1 cut(s) 125
HpaII CCGG 3 cut(s) 29, 66, 84
HphI GGTGA 1 cut(s) 98
Hpy188I TCNGA 1 cut(s) 137
Hpy188III TCNNGA 1 cut(s) 155
HpyCH4III ACNGT 1 cut(s) 55
Hsp92II CATG 2 cut(s) 152, 165
HspAI GCGC 1 cut(s) 32
KroI GCCGGC 1 cut(s) 28
KroNI GCCGGC 1 cut(s) 30
Kzo9I GATC 1 cut(s) 145
LmnI GCTCC 1 cut(s) 74
LpnPI CCDG 6 cut(s) 20, 42, 79, 97, 153, 192
MaeI CTAG 2 cut(s) 155, 211
MalI GATC 1 cut(s) 147
MboI GATC 1 cut(s) 145
MboII GAAGA 3 cut(s) 34, 49, 155
MlyI GAGTC 1 cut(s) 119
MnlI CCTC 1 cut(s) 143
MroNI GCCGGC 1 cut(s) 28
MspI CCGG 3 cut(s) 29, 66, 84
NaeI GCCGGC 1 cut(s) 30
NdeII GATC 1 cut(s) 145
NgoMIV GCCGGC 1 cut(s) 28
NlaIII CATG 2 cut(s) 152, 165
PdiI GCCGGC 1 cut(s) 30
PinAI ACCGGT 1 cut(s) 83
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
PspFI CCCAGC 1 cut(s) 34
PspPI GGNCC 3 cut(s) 37, 81, 137
Sau3AI GATC 1 cut(s) 145
Sau96I GGNCC 3 cut(s) 37, 81, 137
SchI GAGTC 1 cut(s) 119
SetI ASST 2 cut(s) 79, 142
SinI GGWCC 2 cut(s) 81, 137
SsiI CCGC 1 cut(s) 129
SspMI CTAG 2 cut(s) 155, 211
TaaI ACNGT 1 cut(s) 55
TspDTI ATGAA 3 cut(s) 29, 49, 212
VpaK11BI GGWCC 2 cut(s) 81, 137
XbaI TCTAGA 1 cut(s) 154
XspI CTAG 2 cut(s) 155, 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.