Rw5G024430

Pollen proteins Ole e I like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Forward (+)
34728601 .. 34729532
932 bp
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UTR
Exon/CDS
Intron
Rw5G024430.1

Sequence Viewer

Length: 240 bp
ATGGAAGCAGAGATGAACAAGAAGAAGCCGGCGCTGGGCCTTGTCATCTTTACCGTCTTCATTTCCGGTATTGGAGCTTGGACCGGTGAAATCCACGGCAGAGTTATCTGTGATGTTTGTGGCGACTCCGCCCTCGGACCTGAAGATCATGTTCTAGAAGGTAGTTGGTATGAACAAAGTGTCTTGCTGATTGAACAAAGCAAGCGAGAAGAGGCTTATGAACTTCTCATTAGAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

79

Amino Acids

8.78

Weight (kDa)

4.72

Isoelectric Point (pI)

48.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0024999)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0038871
rosa_samantha Rh5BG266200
rosa_wichuraiana Rw5G024430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 129
AcuI CTGAAG 1 cut(s) 162
AfiI CCNNNNNNNGG 1 cut(s) 35
AgeI ACCGGT 1 cut(s) 83
AgsI TTSAA 1 cut(s) 194
AluBI AGCT 1 cut(s) 77
AluI AGCT 1 cut(s) 77
AoxI GGCC 1 cut(s) 37
AsiGI ACCGGT 1 cut(s) 83
AspLEI GCGC 1 cut(s) 34
AspS9I GGNCC 3 cut(s) 37, 81, 137
AsuHPI GGTGA 1 cut(s) 98
AvaII GGWCC 2 cut(s) 81, 137
BbsI GAAGAC 1 cut(s) 49
BceAI ACGGC 1 cut(s) 112
BfaI CTAG 1 cut(s) 155
BfoI RGCGCY 1 cut(s) 35
Bme18I GGWCC 2 cut(s) 81, 137
BmgT120I GGNCC 3 cut(s) 37, 81, 137
BpiI GAAGAC 1 cut(s) 49
BsaJI CCNNGG 2 cut(s) 94, 133
BsaWI WCCGGW 2 cut(s) 65, 83
Bsc4I CCNNNNNNNGG 1 cut(s) 35
Bse118I RCCGGY 2 cut(s) 28, 83
BseDI CCNNGG 2 cut(s) 94, 133
BseLI CCNNNNNNNGG 1 cut(s) 35
BseYI CCCAGC 1 cut(s) 34
BshFI GGCC 1 cut(s) 39
BshTI ACCGGT 1 cut(s) 83
BsiSI CCGG 3 cut(s) 29, 66, 84
BslI CCNNNNNNNGG 1 cut(s) 35
BsnI GGCC 1 cut(s) 39
Bsp143I GATC 1 cut(s) 145
BspACI CCGC 1 cut(s) 129
BspANI GGCC 1 cut(s) 39
BsrFI RCCGGY 2 cut(s) 28, 83
BssAI RCCGGY 2 cut(s) 28, 83
BssECI CCNNGG 2 cut(s) 94, 133
BssMI GATC 1 cut(s) 145
Bst4CI ACNGT 1 cut(s) 55
Bst6I CTCTTC 1 cut(s) 204
BstC8I GCNNGC 2 cut(s) 30, 203
BstDSI CCRYGG 1 cut(s) 94
BstH2I RGCGCY 1 cut(s) 35
BstHHI GCGC 1 cut(s) 34
BstKTI GATC 1 cut(s) 148
BstMBI GATC 1 cut(s) 145
BstV2I GAAGAC 1 cut(s) 49
BsuRI GGCC 1 cut(s) 39
BtgI CCRYGG 1 cut(s) 94
Cac8I GCNNGC 2 cut(s) 30, 203
CfoI GCGC 1 cut(s) 34
Cfr10I RCCGGY 2 cut(s) 28, 83
Cfr13I GGNCC 3 cut(s) 37, 81, 137
CspAI ACCGGT 1 cut(s) 83
CviAII CATG 1 cut(s) 149
CviJI RGCY 4 cut(s) 28, 39, 77, 215
CviKI_1 RGCY 4 cut(s) 28, 39, 77, 215
DpnI GATC 1 cut(s) 147
DpnII GATC 1 cut(s) 145
Eam1104I CTCTTC 1 cut(s) 204
EarI CTCTTC 1 cut(s) 204
EciI GGCGGA 1 cut(s) 118
Eco47I GGWCC 2 cut(s) 81, 137
Eco57I CTGAAG 1 cut(s) 162
FaeI CATG 1 cut(s) 152
FaiI YATR 3 cut(s) 150, 171, 219
FatI CATG 1 cut(s) 148
FspBI CTAG 1 cut(s) 155
GlaI GCGC 1 cut(s) 33
GsaI CCCAGC 1 cut(s) 38
HaeII RGCGCY 1 cut(s) 35
HaeIII GGCC 1 cut(s) 39
HapII CCGG 3 cut(s) 29, 66, 84
HhaI GCGC 1 cut(s) 34
Hin1II CATG 1 cut(s) 152
Hin6I GCGC 1 cut(s) 32
HinP1I GCGC 1 cut(s) 32
HinfI GANTC 1 cut(s) 125
HpaII CCGG 3 cut(s) 29, 66, 84
HphI GGTGA 1 cut(s) 98
Hpy188I TCNGA 1 cut(s) 137
Hpy188III TCNNGA 1 cut(s) 155
HpyAV CCTTC 1 cut(s) 152
HpyCH4III ACNGT 1 cut(s) 55
Hsp92II CATG 1 cut(s) 152
HspAI GCGC 1 cut(s) 32
KroI GCCGGC 1 cut(s) 28
KroNI GCCGGC 1 cut(s) 30
Kzo9I GATC 1 cut(s) 145
LmnI GCTCC 1 cut(s) 74
LpnPI CCDG 5 cut(s) 20, 42, 79, 97, 153
MaeI CTAG 1 cut(s) 155
MalI GATC 1 cut(s) 147
MboI GATC 1 cut(s) 145
MboII GAAGA 4 cut(s) 34, 49, 155, 221
MlyI GAGTC 1 cut(s) 119
MnlI CCTC 2 cut(s) 143, 205
MroNI GCCGGC 1 cut(s) 28
MspI CCGG 3 cut(s) 29, 66, 84
NaeI GCCGGC 1 cut(s) 30
NdeII GATC 1 cut(s) 145
NgoMIV GCCGGC 1 cut(s) 28
NlaIII CATG 1 cut(s) 152
PdiI GCCGGC 1 cut(s) 30
PinAI ACCGGT 1 cut(s) 83
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
PspFI CCCAGC 1 cut(s) 34
PspPI GGNCC 3 cut(s) 37, 81, 137
Sau3AI GATC 1 cut(s) 145
Sau96I GGNCC 3 cut(s) 37, 81, 137
SchI GAGTC 1 cut(s) 119
SetI ASST 3 cut(s) 79, 142, 163
SinI GGWCC 2 cut(s) 81, 137
SsiI CCGC 1 cut(s) 129
SspMI CTAG 1 cut(s) 155
TaaI ACNGT 1 cut(s) 55
TspDTI ATGAA 4 cut(s) 29, 49, 186, 234
VpaK11BI GGWCC 2 cut(s) 81, 137
XbaI TCTAGA 1 cut(s) 154
XspI CTAG 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.