Rh5BG309700

Enoyl-(Acyl carrier protein) reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0031147
Physical Location & Seq
Forward (+)
40542278 .. 40547957
5680 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG309700.1

Sequence Viewer

Length: 510 bp
ATGTCGATGTGTATGTTGGAAGTGGTACTTGATCTTGAGAGATGCAAGAGCATATCTGCATTATCTGAAGATGAGTTTAAACAGATAATGAAGATAAATTTGATGTCTGCTTGGTTTCCGGTAAAGGCCGTTGGCAGAAGAATGCGAGATCATAAGTTAGGAGGTTCCATCATATTGTTGACCTCGATTGTAAGAGGGCTTTCTACAGGAGCTGCCGCCTATGGTGTTCGTTCAGCAGCTCTGCAGCAGTTAGTAAGAAAGAGAAATCAGGCAACTGAAGAAGGAAACAAGTCAGGGGTCATCTTTATGCAAAATTGCAAATTAAAGTTCGAGCCGAATAATCAAGGGCTTTGGGTTAAGGTGTTGAAGATTTGGAATTATAGGGGTTCAGAACAGGCAGAGCAGGTACTATTTGAGATCGATTCTGAACTCTTAAGACACAGACTGCATCCAGGAATGTCAAAAGTGTTTCAACATAGCATAATTTGTTTGGTTAAACACAATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

169

Amino Acids

19.17

Weight (kDa)

9.66

Isoelectric Point (pI)

46.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short_C2 PF13561 17 - 87 6e-08 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031147)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001648.1_g000048
rosa_samantha Rh5BG309700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 394
AciI CCGC 1 cut(s) 216
AcsI RAATTY 1 cut(s) 97
AcuI CTGAAG 2 cut(s) 87, 297
AfaI GTAC 2 cut(s) 27, 408
AflII CTTAAG 1 cut(s) 433
AgsI TTSAA 2 cut(s) 367, 473
AjnI CCWGG 1 cut(s) 451
AluBI AGCT 2 cut(s) 212, 239
AluI AGCT 2 cut(s) 212, 239
AlwNI CAGNNNCTG 1 cut(s) 212
AoxI GGCC 1 cut(s) 126
ApeKI GCWGC 3 cut(s) 212, 236, 244
ApoI RAATTY 1 cut(s) 97
BbvI GCAGC 3 cut(s) 199, 248, 256
BccI CCATC 1 cut(s) 176
BceAI ACGGC 1 cut(s) 113
BciT130I CCWGG 1 cut(s) 453
BfmI CTRYAG 2 cut(s) 204, 242
BfrI CTTAAG 1 cut(s) 433
BfuAI ACCTGC 1 cut(s) 394
BisI GCNGC 4 cut(s) 213, 216, 237, 245
BlsI GCNGC 4 cut(s) 214, 217, 238, 246
Bme1390I CCNGG 1 cut(s) 453
BmiI GGNNCC 1 cut(s) 166
BmrFI CCNGG 1 cut(s) 453
BmsI GCATC 2 cut(s) 32, 457
BpuEI CTTGAG 1 cut(s) 56
Bsa29I ATCGAT 1 cut(s) 420
BsaWI WCCGGW 1 cut(s) 118
BseBI CCWGG 1 cut(s) 453
BseCI ATCGAT 1 cut(s) 420
BseGI GGATG 1 cut(s) 448
BseXI GCAGC 3 cut(s) 199, 248, 256
BshFI GGCC 1 cut(s) 128
BshVI ATCGAT 1 cut(s) 420
BsiSI CCGG 1 cut(s) 119
BsmI GAATGC 1 cut(s) 147
BsnI GGCC 1 cut(s) 128
Bsp143I GATC 3 cut(s) 31, 148, 417
BspACI CCGC 1 cut(s) 216
BspANI GGCC 1 cut(s) 128
BspDI ATCGAT 1 cut(s) 420
BspLI GGNNCC 1 cut(s) 166
BspMAI CTGCAG 1 cut(s) 246
BspMI ACCTGC 1 cut(s) 394
BspTI CTTAAG 1 cut(s) 433
BssMI GATC 3 cut(s) 31, 148, 417
Bst2UI CCWGG 1 cut(s) 453
BstAFI CTTAAG 1 cut(s) 433
BstF5I GGATG 1 cut(s) 448
BstKTI GATC 3 cut(s) 34, 151, 420
BstMBI GATC 3 cut(s) 31, 148, 417
BstNI CCWGG 1 cut(s) 453
BstSCI CCNGG 1 cut(s) 451
BstSFI CTRYAG 2 cut(s) 204, 242
BstV1I GCAGC 3 cut(s) 199, 248, 256
Bsu15I ATCGAT 1 cut(s) 420
BsuRI GGCC 1 cut(s) 128
BsuTUI ATCGAT 1 cut(s) 420
BtsCI GGATG 1 cut(s) 448
BveI ACCTGC 1 cut(s) 394
CaiI CAGNNNCTG 1 cut(s) 212
ClaI ATCGAT 1 cut(s) 420
Csp6I GTAC 2 cut(s) 26, 407
CviJI RGCY 6 cut(s) 128, 199, 212, 239, 334, 349
CviKI_1 RGCY 6 cut(s) 128, 199, 212, 239, 334, 349
CviQI GTAC 2 cut(s) 26, 407
DpnI GATC 3 cut(s) 33, 150, 419
DpnII GATC 3 cut(s) 31, 148, 417
DraI TTTAAA 1 cut(s) 79
Eco57I CTGAAG 2 cut(s) 87, 297
EcoRII CCWGG 1 cut(s) 451
FaiI YATR 9 cut(s) 14, 53, 153, 173, 222, 308, 381, 477, 482
FalI AAGNNNNNCTT 2 cut(s) 12, 44
Fnu4HI GCNGC 4 cut(s) 213, 216, 237, 245
FokI GGATG 1 cut(s) 435
Fsp4HI GCNGC 4 cut(s) 213, 216, 237, 245
GluI GCNGC 4 cut(s) 213, 216, 237, 245
HaeIII GGCC 1 cut(s) 128
HapII CCGG 1 cut(s) 119
HincII GTYRAC 1 cut(s) 180
HindII GTYRAC 1 cut(s) 180
HinfI GANTC 1 cut(s) 422
HpaII CCGG 1 cut(s) 119
Hpy166II GTNNAC 1 cut(s) 180
Hpy188I TCNGA 3 cut(s) 67, 391, 427
Hpy188III TCNNGA 1 cut(s) 35
Hpy8I GTNNAC 1 cut(s) 180
HpyAV CCTTC 1 cut(s) 275
HpyCH4V TGCA 6 cut(s) 45, 59, 244, 310, 318, 448
Kzo9I GATC 3 cut(s) 31, 148, 417
LmnI GCTCC 1 cut(s) 209
LpnPI CCDG 8 cut(s) 132, 192, 254, 279, 380, 389, 438, 465
Lsp1109I GCAGC 3 cut(s) 199, 248, 256
LweI GCATC 2 cut(s) 32, 457
MalI GATC 3 cut(s) 33, 150, 419
MboI GATC 3 cut(s) 31, 148, 417
MboII GAAGA 5 cut(s) 80, 103, 150, 290, 379
MluCI AATT 5 cut(s) 97, 313, 320, 376, 483
MnlI CCTC 3 cut(s) 155, 188, 193
MseI TTAA 5 cut(s) 78, 323, 357, 434, 495
MslI CAYNNNNRTG 1 cut(s) 305
MspCI CTTAAG 1 cut(s) 433
MspI CCGG 1 cut(s) 119
MspR9I CCNGG 1 cut(s) 453
MssI GTTTAAAC 1 cut(s) 79
Mva1269I GAATGC 1 cut(s) 147
MvaI CCWGG 1 cut(s) 453
NdeII GATC 3 cut(s) 31, 148, 417
NlaIV GGNNCC 1 cut(s) 166
PctI GAATGC 1 cut(s) 147
PfeI GAWTC 1 cut(s) 422
PfoI TCCNGGA 1 cut(s) 451
PkrI GCNGC 4 cut(s) 214, 217, 238, 246
PmeI GTTTAAAC 1 cut(s) 79
Psp6I CCWGG 1 cut(s) 451
PspGI CCWGG 1 cut(s) 451
PspN4I GGNNCC 1 cut(s) 166
PstI CTGCAG 1 cut(s) 246
PstNI CAGNNNCTG 1 cut(s) 212
RsaI GTAC 2 cut(s) 27, 408
RsaNI GTAC 2 cut(s) 26, 407
RseI CAYNNNNRTG 1 cut(s) 305
SaqAI TTAA 5 cut(s) 78, 323, 357, 434, 495
SatI GCNGC 4 cut(s) 213, 216, 237, 245
Sau3AI GATC 3 cut(s) 31, 148, 417
ScrFI CCNGG 1 cut(s) 453
SetI ASST 6 cut(s) 166, 185, 214, 241, 363, 408
SfaNI GCATC 2 cut(s) 32, 457
SfcI CTRYAG 2 cut(s) 204, 242
SmiMI CAYNNNNRTG 1 cut(s) 305
SmlI CTYRAG 2 cut(s) 35, 433
SmoI CTYRAG 2 cut(s) 35, 433
Sse9I AATT 5 cut(s) 97, 313, 320, 376, 483
SsiI CCGC 1 cut(s) 216
StyD4I CCNGG 1 cut(s) 451
TaqI TCGA 4 cut(s) 5, 185, 330, 420
TasI AATT 5 cut(s) 97, 313, 320, 376, 483
TauI GCSGC 1 cut(s) 218
TfiI GAWTC 1 cut(s) 422
Tru1I TTAA 5 cut(s) 78, 323, 357, 434, 495
Tru9I TTAA 5 cut(s) 78, 323, 357, 434, 495
TseI GCWGC 3 cut(s) 212, 236, 244
TspDTI ATGAA 1 cut(s) 104
Vha464I CTTAAG 1 cut(s) 433
XapI RAATTY 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.