Rh5BG540400

Disease resistance protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Reverse (-)
85536387 .. 85536661
275 bp
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UTR
Exon/CDS
Intron
Rh5BG540400.1

Sequence Viewer

Length: 155 bp
ATGGAGTTCTTCGAGCTGTCGTTGGCGATTATTGTGGTAATTGTGACATGGATCGGTGCCATAGCTACTATTAAGTGGATATGGACTCTACTGAAGCATTGGTTCGGTTACATGGTTGAAAGGCGCGAGCCAATTGGCATTGCTACTGAGTGGAA

Protein Analysis

51

Amino Acids

6.08

Weight (kDa)

5.61

Isoelectric Point (pI)

14.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0026448)

Species Orthologous Gene IDs
rosa_samantha Rh5BG540400 Rh5BG542200 Rh5CG563300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 56
AccII CGCG 1 cut(s) 126
AclWI GGATC 1 cut(s) 59
AcuI CTGAAG 1 cut(s) 113
AgsI TTSAA 1 cut(s) 119
AluBI AGCT 2 cut(s) 16, 65
AluI AGCT 2 cut(s) 16, 65
AlwI GGATC 1 cut(s) 59
AspLEI GCGC 1 cut(s) 126
BanI GGYRCC 1 cut(s) 56
BmiI GGNNCC 1 cut(s) 58
Bse3DI GCAATG 1 cut(s) 138
BseMI GCAATG 1 cut(s) 138
BseMII CTCAG 1 cut(s) 138
Bsh1236I CGCG 1 cut(s) 126
BshNI GGYRCC 1 cut(s) 56
Bsp143I GATC 1 cut(s) 51
BspCNI CTCAG 1 cut(s) 139
BspFNI CGCG 1 cut(s) 126
BspLI GGNNCC 1 cut(s) 58
BspPI GGATC 1 cut(s) 59
BspT107I GGYRCC 1 cut(s) 56
BsrDI GCAATG 1 cut(s) 138
BssMI GATC 1 cut(s) 51
BstC8I GCNNGC 1 cut(s) 128
BstDEI CTNAG 1 cut(s) 147
BstFNI CGCG 1 cut(s) 126
BstHHI GCGC 1 cut(s) 126
BstKTI GATC 1 cut(s) 54
BstMBI GATC 1 cut(s) 51
BstUI CGCG 1 cut(s) 126
Cac8I GCNNGC 1 cut(s) 128
CfoI GCGC 1 cut(s) 126
CviAII CATG 2 cut(s) 48, 112
CviJI RGCY 3 cut(s) 16, 65, 130
CviKI_1 RGCY 3 cut(s) 16, 65, 130
DdeI CTNAG 1 cut(s) 147
DpnI GATC 1 cut(s) 53
DpnII GATC 1 cut(s) 51
Eco57I CTGAAG 1 cut(s) 113
FaeI CATG 2 cut(s) 51, 115
FaiI YATR 4 cut(s) 49, 62, 82, 113
FatI CATG 2 cut(s) 47, 111
GlaI GCGC 1 cut(s) 125
HhaI GCGC 1 cut(s) 126
Hin1II CATG 2 cut(s) 51, 115
Hin6I GCGC 1 cut(s) 124
HinP1I GCGC 1 cut(s) 124
HinfI GANTC 1 cut(s) 85
HpyF3I CTNAG 1 cut(s) 147
Hsp92II CATG 2 cut(s) 51, 115
HspAI GCGC 1 cut(s) 124
Kzo9I GATC 1 cut(s) 51
MaeIII GTNAC 2 cut(s) 43, 107
MalI GATC 1 cut(s) 53
MboI GATC 1 cut(s) 51
MfeI CAATTG 1 cut(s) 132
MluCI AATT 2 cut(s) 39, 132
MlyI GAGTC 1 cut(s) 79
MseI TTAA 1 cut(s) 72
MunI CAATTG 1 cut(s) 132
MvnI CGCG 1 cut(s) 126
NdeII GATC 1 cut(s) 51
NlaIII CATG 2 cut(s) 51, 115
NlaIV GGNNCC 1 cut(s) 58
NmuCI GTSAC 1 cut(s) 43
PleI GAGTC 1 cut(s) 79
PpsI GAGTC 1 cut(s) 79
PspN4I GGNNCC 1 cut(s) 58
SaqAI TTAA 1 cut(s) 72
Sau3AI GATC 1 cut(s) 51
SchI GAGTC 1 cut(s) 79
SetI ASST 2 cut(s) 18, 67
SgeI CNNG 5 cut(s) 25, 60, 124, 137, 139
Sse9I AATT 2 cut(s) 39, 132
TaqI TCGA 1 cut(s) 12
TasI AATT 2 cut(s) 39, 132
Tru1I TTAA 1 cut(s) 72
Tru9I TTAA 1 cut(s) 72
TseFI GTSAC 1 cut(s) 43
Tsp45I GTSAC 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.