Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0026448

Physical Location & Seq

Genomic Coordinates Reverse (-)

86005456 .. 86012314

Gene Structure 6859 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG542200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGTTGTTGGCGATCATTGTGGTAATTGTGACATGGATCGGTGCCATAGCTACTATTAAGTGGATATGGACTCTACTGAAGCATTGGTTCCGTTACATGGTTGAAAGGCGTGAACCAATATCTCAGGATAATCAAGAATTGATCGACATCGCTACTGAGCCCGAGAGAGAAGAAGAAGAAGAAAAGATGTGGGATCTCAGTGACTCTCCTGATCAGGGAAACGATGGCACCACCTCGGCAGCCGCACCGGTTGCTGCTTCTTCTTCTCTATCATCAGCTGTTGAGTGGAAGGAGTTGAGCGATGAGGTTAATAAGGTCTGTGTTGTCGGCGGTAAAGCCACGAAGGTGGTGGAGCTTGAGGTTCTTCTGGGCGATCGTGTTCTGCACGCGCTTCGCTGCTTTCTGTGTGTCTTCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC TIR

Protein Analysis

139

Amino Acids

15.61

Weight (kDa)

4.6

Isoelectric Point (pI)

39.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0026448)

Species	Orthologous Gene IDs
rosa_samantha	Rh5BG540400 Rh5BG542200 Rh5CG563300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	41, 227
AccII	CGCG	1 cut(s)	389
AciI	CCGC	2 cut(s)	243, 330
AclWI	GGATC	2 cut(s)	44, 201
AcuI	CTGAAG	1 cut(s)	98
AfiI	CCNNNNNNNGG	2 cut(s)	97, 215
AgeI	ACCGGT	1 cut(s)	247
AgsI	TTSAA	2 cut(s)	104, 415
AleI	CACNNNNGTG	1 cut(s)	344
AluBI	AGCT	3 cut(s)	50, 278, 355
AluI	AGCT	3 cut(s)	50, 278, 355
AlwI	GGATC	2 cut(s)	44, 201
Ama87I	CYCGRG	1 cut(s)	161
ApeKI	GCWGC	3 cut(s)	239, 254, 396
AsiGI	ACCGGT	1 cut(s)	247
AspLEI	GCGC	1 cut(s)	391
AvaI	CYCGRG	1 cut(s)	161
BanI	GGYRCC	2 cut(s)	41, 227
BanII	GRGCYC	1 cut(s)	162
BbsI	GAAGAC	1 cut(s)	403
BbvI	GCAGC	3 cut(s)	241, 251, 383
BccI	CCATC	1 cut(s)	218
BcgI	CGANNNNNNTGC	2 cut(s)	374, 408
BclI	TGATCA	1 cut(s)	211
BisI	GCNGC	4 cut(s)	240, 243, 255, 397
BlsI	GCNGC	4 cut(s)	241, 244, 256, 398
BmeT110I	CYCGRG	1 cut(s)	161
BmiI	GGNNCC	3 cut(s)	43, 89, 229
BpiI	GAAGAC	1 cut(s)	403
BpuEI	CTTGAG	1 cut(s)	377
BsaBI	GATNNNNATC	1 cut(s)	146
BsaJI	CCNNGG	1 cut(s)	234
BsaWI	WCCGGW	1 cut(s)	247
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 215
Bse118I	RCCGGY	1 cut(s)	247
Bse8I	GATNNNNATC	1 cut(s)	146
BseDI	CCNNGG	1 cut(s)	234
BseJI	GATNNNNATC	1 cut(s)	146
BseLI	CCNNNNNNNGG	2 cut(s)	97, 215
BseMII	CTCAG	3 cut(s)	137, 147, 211
BseXI	GCAGC	3 cut(s)	241, 251, 383
BsgI	GTGCAG	1 cut(s)	368
Bsh1236I	CGCG	1 cut(s)	389
Bsh1285I	CGRYCG	1 cut(s)	376
BshNI	GGYRCC	2 cut(s)	41, 227
BshTI	ACCGGT	1 cut(s)	247
BsiEI	CGRYCG	1 cut(s)	376
BsiHKCI	CYCGRG	1 cut(s)	161
BsiSI	CCGG	1 cut(s)	248
BslI	CCNNNNNNNGG	2 cut(s)	97, 215
BsoBI	CYCGRG	1 cut(s)	161
Bsp1286I	GDGCHC	1 cut(s)	162
Bsp143I	GATC	6 cut(s)	12, 36, 141, 193, 211, 373
BspACI	CCGC	2 cut(s)	243, 330
BspCNI	CTCAG	3 cut(s)	136, 148, 210
BspFNI	CGCG	1 cut(s)	389
BspLI	GGNNCC	3 cut(s)	43, 89, 229
BspPI	GGATC	2 cut(s)	44, 201
BspT107I	GGYRCC	2 cut(s)	41, 227
BsrFI	RCCGGY	1 cut(s)	247
BssAI	RCCGGY	1 cut(s)	247
BssECI	CCNNGG	1 cut(s)	234
BssMI	GATC	6 cut(s)	12, 36, 141, 193, 211, 373
BstAPI	GCANNNNNTGC	1 cut(s)	251
BstC8I	GCNNGC	1 cut(s)	387
BstDEI	CTNAG	3 cut(s)	123, 156, 197
BstFNI	CGCG	1 cut(s)	389
BstHHI	GCGC	1 cut(s)	391
BstKTI	GATC	6 cut(s)	15, 39, 144, 196, 214, 376
BstMBI	GATC	6 cut(s)	12, 36, 141, 193, 211, 373
BstMCI	CGRYCG	1 cut(s)	376
BstMWI	GCNNNNNNNGC	1 cut(s)	251
BstUI	CGCG	1 cut(s)	389
BstV1I	GCAGC	3 cut(s)	241, 251, 383
BstV2I	GAAGAC	1 cut(s)	403
BstX2I	RGATCY	1 cut(s)	193
BstXI	CCANNNNNNTGG	1 cut(s)	346
BstYI	RGATCY	1 cut(s)	193
BtgZI	GCGATG	2 cut(s)	133, 315
BtsIMutI	CAGTG	1 cut(s)	205
Cac8I	GCNNGC	1 cut(s)	387
CfoI	GCGC	1 cut(s)	391
Cfr10I	RCCGGY	1 cut(s)	247
CspAI	ACCGGT	1 cut(s)	247
CviAII	CATG	2 cut(s)	33, 97
CviJI	RGCY	6 cut(s)	50, 160, 242, 278, 338, 355
CviKI_1	RGCY	6 cut(s)	50, 160, 242, 278, 338, 355
DdeI	CTNAG	3 cut(s)	123, 156, 197
DpnI	GATC	6 cut(s)	14, 38, 143, 195, 213, 375
DpnII	GATC	6 cut(s)	12, 36, 141, 193, 211, 373
Eco24I	GRGCYC	1 cut(s)	162
Eco57I	CTGAAG	1 cut(s)	98
Eco88I	CYCGRG	1 cut(s)	161
EcoT38I	GRGCYC	1 cut(s)	162
FaeI	CATG	2 cut(s)	36, 100
FaiI	YATR	4 cut(s)	34, 47, 67, 98
FatI	CATG	2 cut(s)	32, 96
FbaI	TGATCA	1 cut(s)	211
Fnu4HI	GCNGC	4 cut(s)	240, 243, 255, 397
FriOI	GRGCYC	1 cut(s)	162
Fsp4HI	GCNGC	4 cut(s)	240, 243, 255, 397
GlaI	GCGC	1 cut(s)	390
GluI	GCNGC	4 cut(s)	240, 243, 255, 397
HapII	CCGG	1 cut(s)	248
HhaI	GCGC	1 cut(s)	391
Hin1II	CATG	2 cut(s)	36, 100
Hin6I	GCGC	1 cut(s)	389
HinP1I	GCGC	1 cut(s)	389
HinfI	GANTC	2 cut(s)	70, 203
HpaII	CCGG	1 cut(s)	248
Hpy166II	GTNNAC	1 cut(s)	113
Hpy188III	TCNNGA	3 cut(s)	125, 134, 209
Hpy8I	GTNNAC	1 cut(s)	113
HpyAV	CCTTC	2 cut(s)	283, 337
HpyCH4V	TGCA	1 cut(s)	385
HpyF10VI	GCNNNNNNNGC	1 cut(s)	251
HpyF3I	CTNAG	3 cut(s)	123, 156, 197
Hsp92II	CATG	2 cut(s)	36, 100
HspAI	GCGC	1 cut(s)	389
Ksp22I	TGATCA	1 cut(s)	211
Kzo9I	GATC	6 cut(s)	12, 36, 141, 193, 211, 373
LmnI	GCTCC	1 cut(s)	352
LpnPI	CCDG	5 cut(s)	110, 200, 222, 261, 353
Lsp1109I	GCAGC	3 cut(s)	241, 251, 383
MaeIII	GTNAC	3 cut(s)	28, 92, 200
MalI	GATC	6 cut(s)	14, 38, 143, 195, 213, 375
MboI	GATC	6 cut(s)	12, 36, 141, 193, 211, 373
MboII	GAAGA	8 cut(s)	182, 185, 188, 191, 252, 255, 356, 403
MflI	RGATCY	1 cut(s)	193
MhlI	GDGCHC	1 cut(s)	162
MluCI	AATT	2 cut(s)	24, 137
MlyI	GAGTC	2 cut(s)	64, 197
MnlI	CCTC	3 cut(s)	244, 298, 352
MseI	TTAA	2 cut(s)	57, 309
MslI	CAYNNNNRTG	1 cut(s)	344
MspA1I	CMGCKG	1 cut(s)	278
MspI	CCGG	1 cut(s)	248
MvnI	CGCG	1 cut(s)	389
MwoI	GCNNNNNNNGC	1 cut(s)	251
NdeII	GATC	6 cut(s)	12, 36, 141, 193, 211, 373
NlaIII	CATG	2 cut(s)	36, 100
NlaIV	GGNNCC	3 cut(s)	43, 89, 229
NmeAIII	GCCGAG	1 cut(s)	215
NmuCI	GTSAC	2 cut(s)	28, 200
OliI	CACNNNNGTG	1 cut(s)	344
PinAI	ACCGGT	1 cut(s)	247
PkrI	GCNGC	4 cut(s)	241, 244, 256, 398
Ple19I	CGATCG	1 cut(s)	376
PleI	GAGTC	2 cut(s)	64, 197
PpsI	GAGTC	2 cut(s)	64, 197
PspN4I	GGNNCC	3 cut(s)	43, 89, 229
PsuI	RGATCY	1 cut(s)	193
PvuI	CGATCG	1 cut(s)	376
PvuII	CAGCTG	1 cut(s)	278
RseI	CAYNNNNRTG	1 cut(s)	344
SaqAI	TTAA	2 cut(s)	57, 309
SatI	GCNGC	4 cut(s)	240, 243, 255, 397
Sau3AI	GATC	6 cut(s)	12, 36, 141, 193, 211, 373
SchI	GAGTC	2 cut(s)	64, 197
SduI	GDGCHC	1 cut(s)	162
SetI	ASST	8 cut(s)	52, 236, 280, 309, 318, 348, 357, 363
SmiMI	CAYNNNNRTG	1 cut(s)	344
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
Sse9I	AATT	2 cut(s)	24, 137
SsiI	CCGC	2 cut(s)	243, 330
TaqI	TCGA	1 cut(s)	144
TasI	AATT	2 cut(s)	24, 137
TauI	GCSGC	1 cut(s)	245
Tru1I	TTAA	2 cut(s)	57, 309
Tru9I	TTAA	2 cut(s)	57, 309
TscAI	CASTG	1 cut(s)	205
TseFI	GTSAC	2 cut(s)	28, 200
TseI	GCWGC	3 cut(s)	239, 254, 396
Tsp45I	GTSAC	2 cut(s)	28, 200
TspGWI	ACGGA	1 cut(s)	80
TspRI	CASTG	1 cut(s)	205
XcmI	CCANNNNNNNNNTGG	1 cut(s)	346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.