Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0020428

Physical Location & Seq

Genomic Coordinates Reverse (-)

9736958 .. 9738530

Gene Structure 1573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG118100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGAGCATGCTGATGATCATGAGAGGCTATATTCCAATCATACCGCATCTCTCCGCTCCACCATGCCTCACAAAGCTATTGGCTGCTATTACTTTGAAACAACTCTGGAGTTAGTAAAACCAGAATACCACATACAGACAAATCGGAAGGATTCATATGGCAAGACCTGTTTTCAGCTACTAGGCCTTCTGGAAGATGATTACAACAAAAATGTATGTCATCCTATGGAGCATCGATCATTGCTAAAGGTTCGTGCTAGTTACTTTACTCGCAGACACAAAATATGGCAAACCATTGATAGAGCTTTTGCACATGAGCTTGTGCCAACAATCACCTATACTTCTTCAAATGTTGTCCAAACCATTATGCAGGCTTTCTCACAACTGCCATATTTAAAGATATGGTATAGTCCTGACTCTTACATGGGTGCAAATATTAGAGTTTTACTAGAGCAGATAACAAAGATGATAGATGAAGAAATTGTTGAGATACATCCAGCACACTATAGAGACTCAATCAGATCTCTGCTACCTTGCCTGCTTTATTATCAGGATGGGACATGCATAGTGCATCATTTGTTTGGAATGAGGTTGTCAACAGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006091 GO:0006139 GO:0006520 GO:0006531 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008047 GO:0008150 GO:0008152 GO:0008987 GO:0009058 GO:0009060 GO:0009066 GO:0009108 GO:0009117 GO:0009165 GO:0009435 GO:0009507 GO:0009536 GO:0009893 GO:0009987 GO:0015980 GO:0016043 GO:0016053 GO:0016226 GO:0017144 GO:0018130 GO:0019222 GO:0019355 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0019674 GO:0019752 GO:0019805 GO:0022607 GO:0030234 GO:0031163 GO:0031323 GO:0031325 GO:0034627 GO:0034628 GO:0034641 GO:0034654 GO:0042762 GO:0042802 GO:0042803 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046394 GO:0046483 GO:0046496 GO:0046874 GO:0046983 GO:0048037 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051176 GO:0051186 GO:0051188 GO:0051536 GO:0051539 GO:0051540 GO:0055086 GO:0055114 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0072524 GO:0072525 GO:0090407 GO:0098772 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605

KEGG Pathways

Metabolic & Signaling

ko00760 ko01100 map00760 map01100

Pfam Domains

Protein Families

NadA SufE

Protein Analysis

201

Amino Acids

23.62

Weight (kDa)

6.89

Isoelectric Point (pI)

47.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020428)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g12280 pycom10g03800 pycom13g24390 pycom14g14160
rosa_chinensis	RchiOBHm_Chr5g0014091
rosa_samantha	Rh5CG118100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	57
AciI	CCGC	2 cut(s)	45, 55
AgsI	TTSAA	2 cut(s)	98, 348
AluBI	AGCT	4 cut(s)	77, 178, 305, 319
AluI	AGCT	4 cut(s)	77, 178, 305, 319
Alw26I	GTCTC	1 cut(s)	504
AoxI	GGCC	1 cut(s)	184
ApeKI	GCWGC	1 cut(s)	84
AsuHPI	GGTGA	1 cut(s)	325
BbvI	GCAGC	1 cut(s)	71
BccI	CCATC	1 cut(s)	548
BclI	TGATCA	1 cut(s)	16
BcoDI	GTCTC	1 cut(s)	504
BfaI	CTAG	3 cut(s)	182, 258, 449
BfmI	CTRYAG	1 cut(s)	505
BglII	AGATCT	1 cut(s)	521
BisI	GCNGC	1 cut(s)	85
BlsI	GCNGC	1 cut(s)	86
BmsI	GCATC	3 cut(s)	56, 241, 580
BpmI	CTGGAG	1 cut(s)	128
Bsa29I	ATCGAT	1 cut(s)	235
Bse3DI	GCAATG	1 cut(s)	239
BseCI	ATCGAT	1 cut(s)	235
BseGI	GGATG	3 cut(s)	220, 493, 559
BseMI	GCAATG	1 cut(s)	239
BseXI	GCAGC	1 cut(s)	71
BshFI	GGCC	1 cut(s)	186
BshVI	ATCGAT	1 cut(s)	235
BslFI	GGGAC	1 cut(s)	571
BsmAI	GTCTC	1 cut(s)	504
BsmFI	GGGAC	1 cut(s)	571
BsnI	GGCC	1 cut(s)	186
Bsp143I	GATC	3 cut(s)	16, 236, 521
BspACI	CCGC	2 cut(s)	45, 55
BspANI	GGCC	1 cut(s)	186
BspDI	ATCGAT	1 cut(s)	235
BspHI	TCATGA	1 cut(s)	19
BsrBI	CCGCTC	1 cut(s)	57
BsrDI	GCAATG	1 cut(s)	239
BssMI	GATC	3 cut(s)	16, 236, 521
BstC8I	GCNNGC	3 cut(s)	9, 372, 539
BstF5I	GGATG	3 cut(s)	220, 493, 559
BstKTI	GATC	3 cut(s)	19, 239, 524
BstMAI	GTCTC	1 cut(s)	504
BstMBI	GATC	3 cut(s)	16, 236, 521
BstNSI	RCATGY	2 cut(s)	11, 564
BstSFI	CTRYAG	1 cut(s)	505
BstV1I	GCAGC	1 cut(s)	71
BstX2I	RGATCY	1 cut(s)	521
BstYI	RGATCY	1 cut(s)	521
Bsu15I	ATCGAT	1 cut(s)	235
BsuRI	GGCC	1 cut(s)	186
BsuTUI	ATCGAT	1 cut(s)	235
BtsCI	GGATG	3 cut(s)	220, 493, 559
Cac8I	GCNNGC	3 cut(s)	9, 372, 539
CciI	TCATGA	1 cut(s)	19
ClaI	ATCGAT	1 cut(s)	235
CviAII	CATG	6 cut(s)	8, 20, 64, 314, 424, 561
CviJI	RGCY	8 cut(s)	28, 77, 84, 178, 186, 305, 319, 374
CviKI_1	RGCY	8 cut(s)	28, 77, 84, 178, 186, 305, 319, 374
DpnI	GATC	3 cut(s)	18, 238, 523
DpnII	GATC	3 cut(s)	16, 236, 521
DraI	TTTAAA	1 cut(s)	396
Eco147I	AGGCCT	1 cut(s)	186
EcoT22I	ATGCAT	1 cut(s)	566
FaeI	CATG	6 cut(s)	11, 23, 67, 317, 427, 564
FaqI	GGGAC	1 cut(s)	571
FatI	CATG	6 cut(s)	7, 19, 63, 313, 423, 560
FauNDI	CATATG	1 cut(s)	157
FbaI	TGATCA	1 cut(s)	16
Fnu4HI	GCNGC	1 cut(s)	85
FokI	GGATG	3 cut(s)	207, 480, 566
Fsp4HI	GCNGC	1 cut(s)	85
FspBI	CTAG	3 cut(s)	182, 258, 449
GluI	GCNGC	1 cut(s)	85
GsuI	CTGGAG	1 cut(s)	128
HaeIII	GGCC	1 cut(s)	186
Hin1II	CATG	6 cut(s)	11, 23, 67, 317, 427, 564
HincII	GTYRAC	1 cut(s)	597
HindII	GTYRAC	1 cut(s)	597
HinfI	GANTC	3 cut(s)	152, 416, 512
HphI	GGTGA	1 cut(s)	325
Hpy166II	GTNNAC	1 cut(s)	597
Hpy188I	TCNGA	2 cut(s)	147, 521
Hpy188III	TCNNGA	5 cut(s)	20, 107, 191, 413, 551
Hpy8I	GTNNAC	1 cut(s)	597
HpyAV	CCTTC	2 cut(s)	142, 197
HpyCH4V	TGCA	5 cut(s)	311, 370, 431, 564, 571
Hsp92II	CATG	6 cut(s)	11, 23, 67, 317, 427, 564
Ksp22I	TGATCA	1 cut(s)	16
Kzo9I	GATC	3 cut(s)	16, 236, 521
LmnI	GCTCC	3 cut(s)	4, 62, 229
Lsp1109I	GCAGC	1 cut(s)	71
LweI	GCATC	3 cut(s)	56, 241, 580
MaeI	CTAG	3 cut(s)	182, 258, 449
MaeIII	GTNAC	1 cut(s)	260
MalI	GATC	3 cut(s)	18, 238, 523
MbiI	CCGCTC	1 cut(s)	57
MboI	GATC	3 cut(s)	16, 236, 521
MboII	GAAGA	3 cut(s)	206, 336, 488
MflI	RGATCY	1 cut(s)	521
MluCI	AATT	1 cut(s)	480
MlyI	GAGTC	2 cut(s)	410, 506
MnlI	CCTC	3 cut(s)	18, 78, 582
Mph1103I	ATGCAT	1 cut(s)	566
MseI	TTAA	1 cut(s)	395
MslI	CAYNNNNRTG	1 cut(s)	12
NdeI	CATATG	1 cut(s)	157
NdeII	GATC	3 cut(s)	16, 236, 521
NlaIII	CATG	6 cut(s)	11, 23, 67, 317, 427, 564
NsiI	ATGCAT	1 cut(s)	566
NspI	RCATGY	2 cut(s)	11, 564
PaeI	GCATGC	1 cut(s)	11
PagI	TCATGA	1 cut(s)	19
PceI	AGGCCT	1 cut(s)	186
PfeI	GAWTC	1 cut(s)	152
PkrI	GCNGC	1 cut(s)	86
PleI	GAGTC	2 cut(s)	410, 506
PpsI	GAGTC	2 cut(s)	410, 506
PsuI	RGATCY	1 cut(s)	521
RseI	CAYNNNNRTG	1 cut(s)	12
SaqAI	TTAA	1 cut(s)	395
SatI	GCNGC	1 cut(s)	85
Sau3AI	GATC	3 cut(s)	16, 236, 521
SchI	GAGTC	2 cut(s)	410, 506
SetI	ASST	9 cut(s)	79, 170, 180, 252, 307, 321, 338, 535, 593
SfaNI	GCATC	3 cut(s)	56, 241, 580
SfcI	CTRYAG	1 cut(s)	505
SmiMI	CAYNNNNRTG	1 cut(s)	12
SphI	GCATGC	1 cut(s)	11
Sse9I	AATT	1 cut(s)	480
SseBI	AGGCCT	1 cut(s)	186
SsiI	CCGC	2 cut(s)	45, 55
SspI	AATATT	1 cut(s)	436
SspMI	CTAG	3 cut(s)	182, 258, 449
StuI	AGGCCT	1 cut(s)	186
TaqI	TCGA	1 cut(s)	235
TasI	AATT	1 cut(s)	480
TfiI	GAWTC	1 cut(s)	152
Tru1I	TTAA	1 cut(s)	395
Tru9I	TTAA	1 cut(s)	395
TseI	GCWGC	1 cut(s)	84
TspDTI	ATGAA	2 cut(s)	144, 489
XceI	RCATGY	2 cut(s)	11, 564
XspI	CTAG	3 cut(s)	182, 258, 449
Zsp2I	ATGCAT	1 cut(s)	566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.