Rh5CG195200

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0024598
Physical Location & Seq
Reverse (-)
19434100 .. 19434372
273 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG195200.1

Sequence Viewer

Length: 273 bp
ATGGATCCAGCACTAGCTGATTTGTGTACTAACAAAGATCAACTGTTAAGATGCGTTCAAGTTGGTCTTCTATGCGTGGAGGATAGTGCAGCGAATCGACCTACCATGTCAGATGTGCTCTCCGGGTTGACAAATGAAAGCTCACCATTACCTGCACCTACAAAGCCAGCATTTTCTACAGATAGACATGCGGTCACCAGTACTATAGCTGAAAAGGAACCACAAATTTTATCTGTAAATGATCTGACCATTTCCGCTTGTGATGGACGTTAA

Protein Analysis

90

Amino Acids

9.53

Weight (kDa)

4.51

Isoelectric Point (pI)

54.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3403 PF11883 45 - 90 1.4e-06 Domain of unknown function (DUF3403)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024598)

Species Orthologous Gene IDs
prunus_persica Prupe.1G474400_v2.0.a1
rosa_rugosa Rorug05G0086800
rosa_samantha Rh5CG195200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 160
AciI CCGC 2 cut(s) 191, 255
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 1 cut(s) 225
AfaI GTAC 2 cut(s) 28, 202
AgsI TTSAA 1 cut(s) 59
AhdI GACNNNNNGTC 1 cut(s) 191
AluBI AGCT 3 cut(s) 17, 141, 209
AluI AGCT 3 cut(s) 17, 141, 209
Alw21I GWGCWC 1 cut(s) 120
AlwI GGATC 1 cut(s) 12
ApeKI GCWGC 1 cut(s) 89
ApoI RAATTY 1 cut(s) 225
AsuC2I CCSGG 1 cut(s) 124
AsuHPI GGTGA 2 cut(s) 135, 187
BamHI GGATCC 1 cut(s) 4
BbsI GAAGAC 1 cut(s) 59
Bbv12I GWGCWC 1 cut(s) 120
BbvI GCAGC 1 cut(s) 101
BccI CCATC 1 cut(s) 257
BcnI CCSGG 1 cut(s) 124
BfaI CTAG 1 cut(s) 14
BfmI CTRYAG 2 cut(s) 177, 204
BfuAI ACCTGC 1 cut(s) 160
BisI GCNGC 1 cut(s) 90
BlsI GCNGC 1 cut(s) 91
BmcAI AGTACT 1 cut(s) 202
Bme1390I CCNGG 1 cut(s) 124
BmeRI GACNNNNNGTC 1 cut(s) 191
BmiI GGNNCC 2 cut(s) 6, 219
BmrFI CCNGG 1 cut(s) 124
BmsI GCATC 1 cut(s) 41
BpiI GAAGAC 1 cut(s) 59
BpuMI CCSGG 1 cut(s) 124
Bse1I ACTGG 1 cut(s) 198
BseNI ACTGG 1 cut(s) 198
BseXI GCAGC 1 cut(s) 101
BsgI GTGCAG 2 cut(s) 108, 138
BsiHKAI GWGCWC 1 cut(s) 120
BsiSI CCGG 1 cut(s) 123
Bsp1286I GDGCHC 1 cut(s) 120
Bsp143I GATC 3 cut(s) 4, 37, 241
BspACI CCGC 2 cut(s) 191, 255
BspLI GGNNCC 2 cut(s) 6, 219
BspMI ACCTGC 1 cut(s) 160
BspPI GGATC 1 cut(s) 12
BsrI ACTGG 1 cut(s) 198
BssMI GATC 3 cut(s) 4, 37, 241
Bst4CI ACNGT 1 cut(s) 45
BstC8I GCNNGC 1 cut(s) 168
BstEII GGTNACC 1 cut(s) 193
BstKTI GATC 3 cut(s) 7, 40, 244
BstMBI GATC 3 cut(s) 4, 37, 241
BstNSI RCATGY 1 cut(s) 191
BstPI GGTNACC 1 cut(s) 193
BstSCI CCNGG 1 cut(s) 122
BstSFI CTRYAG 2 cut(s) 177, 204
BstV1I GCAGC 1 cut(s) 101
BstV2I GAAGAC 1 cut(s) 59
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BveI ACCTGC 1 cut(s) 160
Cac8I GCNNGC 1 cut(s) 168
Csp6I GTAC 2 cut(s) 27, 201
CviAII CATG 2 cut(s) 106, 188
CviJI RGCY 4 cut(s) 17, 141, 166, 209
CviKI_1 RGCY 4 cut(s) 17, 141, 166, 209
CviQI GTAC 2 cut(s) 27, 201
DpnI GATC 3 cut(s) 6, 39, 243
DpnII GATC 3 cut(s) 4, 37, 241
DriI GACNNNNNGTC 1 cut(s) 191
Eam1105I GACNNNNNGTC 1 cut(s) 191
Eco91I GGTNACC 1 cut(s) 193
EcoO65I GGTNACC 1 cut(s) 193
FaeI CATG 2 cut(s) 109, 191
FaiI YATR 4 cut(s) 73, 107, 189, 206
FalI AAGNNNNNCTT 2 cut(s) 51, 83
FatI CATG 2 cut(s) 105, 187
Fnu4HI GCNGC 1 cut(s) 90
Fsp4HI GCNGC 1 cut(s) 90
FspBI CTAG 1 cut(s) 14
GluI GCNGC 1 cut(s) 90
HapII CCGG 1 cut(s) 123
Hin1II CATG 2 cut(s) 109, 191
HincII GTYRAC 1 cut(s) 129
HindII GTYRAC 1 cut(s) 129
HinfI GANTC 1 cut(s) 94
HpaII CCGG 1 cut(s) 123
HphI GGTGA 2 cut(s) 135, 187
Hpy166II GTNNAC 2 cut(s) 27, 129
Hpy188I TCNGA 2 cut(s) 112, 246
Hpy8I GTNNAC 2 cut(s) 27, 129
HpyCH4III ACNGT 1 cut(s) 45
HpyCH4IV ACGT 1 cut(s) 268
HpyCH4V TGCA 2 cut(s) 89, 155
HpySE526I ACGT 1 cut(s) 268
Hsp92II CATG 2 cut(s) 109, 191
Kzo9I GATC 3 cut(s) 4, 37, 241
LpnPI CCDG 5 cut(s) 21, 136, 165, 180, 211
Lsp1109I GCAGC 1 cut(s) 101
LweI GCATC 1 cut(s) 41
MaeI CTAG 1 cut(s) 14
MaeII ACGT 1 cut(s) 268
MaeIII GTNAC 1 cut(s) 193
MalI GATC 3 cut(s) 6, 39, 243
MboI GATC 3 cut(s) 4, 37, 241
MboII GAAGA 1 cut(s) 59
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 120
MluCI AATT 1 cut(s) 225
MnlI CCTC 1 cut(s) 73
MseI TTAA 2 cut(s) 47, 271
MspI CCGG 1 cut(s) 123
MspR9I CCNGG 1 cut(s) 124
NciI CCSGG 1 cut(s) 124
NdeII GATC 3 cut(s) 4, 37, 241
NlaIII CATG 2 cut(s) 109, 191
NlaIV GGNNCC 2 cut(s) 6, 219
NmuCI GTSAC 1 cut(s) 193
NspI RCATGY 1 cut(s) 191
PfeI GAWTC 1 cut(s) 94
PkrI GCNGC 1 cut(s) 91
PspEI GGTNACC 1 cut(s) 193
PspN4I GGNNCC 2 cut(s) 6, 219
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 2 cut(s) 28, 202
RsaNI GTAC 2 cut(s) 27, 201
SaqAI TTAA 2 cut(s) 47, 271
SatI GCNGC 1 cut(s) 90
Sau3AI GATC 3 cut(s) 4, 37, 241
ScaI AGTACT 1 cut(s) 202
ScrFI CCNGG 1 cut(s) 124
SduI GDGCHC 1 cut(s) 120
SetI ASST 7 cut(s) 19, 103, 143, 154, 160, 211, 271
SfaNI GCATC 1 cut(s) 41
SfcI CTRYAG 2 cut(s) 177, 204
Sse9I AATT 1 cut(s) 225
SsiI CCGC 2 cut(s) 191, 255
SspMI CTAG 1 cut(s) 14
StyD4I CCNGG 1 cut(s) 122
TaaI ACNGT 1 cut(s) 45
TaiI ACGT 1 cut(s) 271
TaqI TCGA 1 cut(s) 97
TasI AATT 1 cut(s) 225
TatI WGTACW 2 cut(s) 26, 200
TfiI GAWTC 1 cut(s) 94
Tru1I TTAA 2 cut(s) 47, 271
Tru9I TTAA 2 cut(s) 47, 271
TseFI GTSAC 1 cut(s) 193
TseI GCWGC 1 cut(s) 89
Tsp45I GTSAC 1 cut(s) 193
TspDTI ATGAA 1 cut(s) 150
XapI RAATTY 1 cut(s) 225
XceI RCATGY 1 cut(s) 191
XspI CTAG 1 cut(s) 14
ZrmI AGTACT 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.