Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0018003

Physical Location & Seq

Genomic Coordinates Forward (+)

27537246 .. 27537753

Gene Structure 508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG259300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGCGTTCTCATTGCTTCCTCATGCTCCTTGTTTTCTTTCTTCCTCTCGTACTCGCCGCCACTGGTCCGCCCTCTTCCTCCGATTGGAAGCCTATCAACCCAAGCAGCGAAGTAGCAAAAAAAATGGCAGAAGCCGCAGTCTCCCAGTACAATGAGAATGCTGCAAATAAATTAACTTTACAAAACGTGGTTTCAGGCAGGAGCAGAGAAACATCTTCAGGTCCCCGAGACATCATATTTGAGCTCACTCTTGCAGCCAAGAATGAGTCGTTCAGCCGTAACCCGCCTTCAAATTATTGGGCTTCTGTAGTGGTGACTTTTGAAACTGTTATTCAACTCGTCGACTTTAGGAAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010029 GO:0010030 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030312 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034605 GO:0043086 GO:0044092 GO:0044464 GO:0045861 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772 GO:1900140 GO:2000026 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

119

Amino Acids

13.13

Weight (kDa)

8.89

Isoelectric Point (pI)

42.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQAPI	PF16845	40 - 116	3.6e-06	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018003)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g19830
rosa_laevigata	RLG00000033462
rosa_multiflora	Rmu_sc0002206.1_g000002 Rmu_sc0002681.1_g000003
rosa_roxburghii	Rroxscaffold_1G00046710
rosa_rugosa	Rorug05G0138700
rosa_samantha	Rh5AG230400 Rh5BG231300 Rh5CG259300 Rh5DG236500
rosa_wichuraiana	Rw5G021050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	342
AciI	CCGC	4 cut(s)	57, 68, 135, 284
AcuI	CTGAAG	1 cut(s)	201
AfaI	GTAC	2 cut(s)	51, 149
AfiI	CCNNNNNNNGG	1 cut(s)	84
AgsI	TTSAA	3 cut(s)	291, 323, 335
AluBI	AGCT	2 cut(s)	244, 356
AluI	AGCT	2 cut(s)	244, 356
Alw21I	GWGCWC	1 cut(s)	246
Alw26I	GTCTC	2 cut(s)	145, 222
Ama87I	CYCGRG	1 cut(s)	225
ApeKI	GCWGC	3 cut(s)	105, 161, 254
ArsI	GACNNNNNNTTYG	2 cut(s)	221, 253
AspS9I	GGNCC	2 cut(s)	65, 221
AsuHPI	GGTGA	1 cut(s)	325
AvaI	CYCGRG	1 cut(s)	225
AvaII	GGWCC	2 cut(s)	65, 221
BanII	GRGCYC	1 cut(s)	246
BarI	GAAGNNNNNNTAC	2 cut(s)	271, 303
Bbv12I	GWGCWC	1 cut(s)	246
BbvI	GCAGC	3 cut(s)	117, 148, 266
BceAI	ACGGC	1 cut(s)	261
BcoDI	GTCTC	2 cut(s)	145, 222
BfmI	CTRYAG	1 cut(s)	306
BisI	GCNGC	5 cut(s)	57, 106, 135, 162, 255
BlsI	GCNGC	5 cut(s)	58, 107, 136, 163, 256
Bme18I	GGWCC	2 cut(s)	65, 221
BmeT110I	CYCGRG	1 cut(s)	225
BmgT120I	GGNCC	2 cut(s)	65, 221
BmiI	GGNNCC	1 cut(s)	223
BmrI	ACTGGG	1 cut(s)	139
BmuI	ACTGGG	1 cut(s)	139
Bsc4I	CCNNNNNNNGG	1 cut(s)	84
Bse1I	ACTGG	2 cut(s)	67, 145
Bse3DI	GCAATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	1 cut(s)	84
BseMI	GCAATG	1 cut(s)	10
BseNI	ACTGG	2 cut(s)	67, 145
BseXI	GCAGC	3 cut(s)	117, 148, 266
BsiHKAI	GWGCWC	1 cut(s)	246
BsiHKCI	CYCGRG	1 cut(s)	225
BslFI	GGGAC	1 cut(s)	207
BslI	CCNNNNNNNGG	1 cut(s)	84
BsmAI	GTCTC	2 cut(s)	145, 222
BsmFI	GGGAC	1 cut(s)	207
BsmI	GAATGC	1 cut(s)	163
BsoBI	CYCGRG	1 cut(s)	225
Bsp1286I	GDGCHC	1 cut(s)	246
BspACI	CCGC	4 cut(s)	57, 68, 135, 284
BspLI	GGNNCC	1 cut(s)	223
BsrDI	GCAATG	1 cut(s)	10
BsrI	ACTGG	2 cut(s)	67, 145
Bst4CI	ACNGT	1 cut(s)	328
Bst6I	CTCTTC	1 cut(s)	79
BstMAI	GTCTC	2 cut(s)	145, 222
BstMWI	GCNNNNNNNGC	1 cut(s)	134
BstSFI	CTRYAG	1 cut(s)	306
BstV1I	GCAGC	3 cut(s)	117, 148, 266
BtsIMutI	CAGTG	1 cut(s)	60
Cfr13I	GGNCC	2 cut(s)	65, 221
Csp6I	GTAC	2 cut(s)	50, 148
CviAII	CATG	1 cut(s)	22
CviJI	RGCY	7 cut(s)	91, 134, 244, 257, 276, 302, 356
CviKI_1	RGCY	7 cut(s)	91, 134, 244, 257, 276, 302, 356
CviQI	GTAC	2 cut(s)	50, 148
Eam1104I	CTCTTC	1 cut(s)	79
EarI	CTCTTC	1 cut(s)	79
EciI	GGCGGA	1 cut(s)	57
Ecl136II	GAGCTC	1 cut(s)	244
Eco24I	GRGCYC	1 cut(s)	246
Eco47I	GGWCC	2 cut(s)	65, 221
Eco53kI	GAGCTC	1 cut(s)	244
Eco57I	CTGAAG	1 cut(s)	201
Eco88I	CYCGRG	1 cut(s)	225
EcoICRI	GAGCTC	1 cut(s)	244
EcoO109I	RGGNCCY	1 cut(s)	221
EcoT38I	GRGCYC	1 cut(s)	246
FaeI	CATG	1 cut(s)	25
FaiI	YATR	2 cut(s)	23, 236
FaqI	GGGAC	1 cut(s)	207
FatI	CATG	1 cut(s)	21
FauI	CCCGC	1 cut(s)	291
FblI	GTMKAC	1 cut(s)	342
Fnu4HI	GCNGC	5 cut(s)	57, 106, 135, 162, 255
FriOI	GRGCYC	1 cut(s)	246
Fsp4HI	GCNGC	5 cut(s)	57, 106, 135, 162, 255
GluI	GCNGC	5 cut(s)	57, 106, 135, 162, 255
Hin1II	CATG	1 cut(s)	25
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HindIII	AAGCTT	1 cut(s)	354
HinfI	GANTC	1 cut(s)	266
HphI	GGTGA	1 cut(s)	325
Hpy166II	GTNNAC	1 cut(s)	343
Hpy188I	TCNGA	1 cut(s)	82
Hpy8I	GTNNAC	1 cut(s)	343
Hpy99I	CGWCG	1 cut(s)	344
HpyAV	CCTTC	1 cut(s)	297
HpyCH4III	ACNGT	1 cut(s)	328
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	2 cut(s)	164, 254
HpyF10VI	GCNNNNNNNGC	1 cut(s)	134
HpySE526I	ACGT	1 cut(s)	186
Hsp92II	CATG	1 cut(s)	25
LmnI	GCTCC	2 cut(s)	30, 201
LpnPI	CCDG	5 cut(s)	48, 158, 180, 184, 204
Lsp1109I	GCAGC	3 cut(s)	117, 148, 266
MaeII	ACGT	1 cut(s)	186
MaeIII	GTNAC	2 cut(s)	278, 313
MboII	GAAGA	3 cut(s)	32, 66, 207
MhlI	GDGCHC	1 cut(s)	246
MluCI	AATT	2 cut(s)	170, 292
MlyI	GAGTC	1 cut(s)	275
MnlI	CCTC	4 cut(s)	29, 54, 82, 88
MseI	TTAA	1 cut(s)	173
Mva1269I	GAATGC	1 cut(s)	163
MwoI	GCNNNNNNNGC	1 cut(s)	134
NlaIII	CATG	1 cut(s)	25
NlaIV	GGNNCC	1 cut(s)	223
NmuCI	GTSAC	1 cut(s)	313
PctI	GAATGC	1 cut(s)	163
PkrI	GCNGC	5 cut(s)	58, 107, 136, 163, 256
PleI	GAGTC	1 cut(s)	274
PpsI	GAGTC	1 cut(s)	274
PpuMI	RGGWCCY	1 cut(s)	221
Psp124BI	GAGCTC	1 cut(s)	246
Psp5II	RGGWCCY	1 cut(s)	221
PspN4I	GGNNCC	1 cut(s)	223
PspPI	GGNCC	2 cut(s)	65, 221
PspPPI	RGGWCCY	1 cut(s)	221
RsaI	GTAC	2 cut(s)	51, 149
RsaNI	GTAC	2 cut(s)	50, 148
SacI	GAGCTC	1 cut(s)	246
SalI	GTCGAC	1 cut(s)	341
SaqAI	TTAA	1 cut(s)	173
SatI	GCNGC	5 cut(s)	57, 106, 135, 162, 255
Sau96I	GGNCC	2 cut(s)	65, 221
SchI	GAGTC	1 cut(s)	275
SduI	GDGCHC	1 cut(s)	246
SetI	ASST	4 cut(s)	189, 223, 246, 358
SfcI	CTRYAG	1 cut(s)	306
SinI	GGWCC	2 cut(s)	65, 221
Sse9I	AATT	2 cut(s)	170, 292
SsiI	CCGC	4 cut(s)	57, 68, 135, 284
SstI	GAGCTC	1 cut(s)	246
TaaI	ACNGT	1 cut(s)	328
TaiI	ACGT	1 cut(s)	189
TaqI	TCGA	1 cut(s)	342
TasI	AATT	2 cut(s)	170, 292
TatI	WGTACW	1 cut(s)	147
TauI	GCSGC	2 cut(s)	59, 137
Tru1I	TTAA	1 cut(s)	173
Tru9I	TTAA	1 cut(s)	173
TscAI	CASTG	1 cut(s)	67
TseFI	GTSAC	1 cut(s)	313
TseI	GCWGC	3 cut(s)	105, 161, 254
Tsp45I	GTSAC	1 cut(s)	313
TspRI	CASTG	1 cut(s)	67
VpaK11BI	GGWCC	2 cut(s)	65, 221
XmiI	GTMKAC	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.