Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0024973

Physical Location & Seq

Genomic Coordinates Reverse (-)

40360068 .. 40361775

Gene Structure 1708 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG350100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGTTTCCCTCCAGAAAGCTTGGAGCTGGGACAGCGGCGTCTCCTCCAAGTTCGCCACCACTCCTCTCAAAGACATTTTTCAAGGACAAGAAAGTCGTCATCTTTGGCCTCCCTGGTGCGTATACGGACTTTTGTTTCCAGCAGCATGTGCCTAATGGGCAGATACTTCAAGCTAAAGATTCCATTGAGTTCTACGGGGACTTTCATGGGAGCTTCCACAAAAGCTTGGAGTTAGATAAAGATCTCTCTGTTGCTTTGCTTGGACCTCGCTCTCAGAGATGGTCGGCATATGTAGTTGACGGGAAGGTTAAAGTTCTAAATGATGAGGAAGCCCCATCAGCCATCAAGGTCTCTGGTGGAGATGTCATTTTGGGACAGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0010035 GO:0010038 GO:0016209 GO:0016491 GO:0016684 GO:0031974 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0050896 GO:0051716 GO:0055114 GO:0070013 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Redoxin

Protein Analysis

127

Amino Acids

13.75

Weight (kDa)

7.85

Isoelectric Point (pI)

48.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0024973)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0395851
rosa_samantha	Rh5CG350100 Rh7BG259600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	37, 92
AccI	GTMKAC	1 cut(s)	122
AciI	CCGC	1 cut(s)	35
AcyI	GRCGYC	1 cut(s)	38
AgsI	TTSAA	2 cut(s)	82, 170
AjnI	CCWGG	1 cut(s)	112
AluBI	AGCT	5 cut(s)	19, 26, 173, 213, 225
AluI	AGCT	5 cut(s)	19, 26, 173, 213, 225
Alw26I	GTCTC	2 cut(s)	45, 355
AoxI	GGCC	1 cut(s)	106
ApeKI	GCWGC	1 cut(s)	142
AspS9I	GGNCC	1 cut(s)	263
AvaII	GGWCC	1 cut(s)	263
BbvI	GCAGC	1 cut(s)	154
BccI	CCATC	3 cut(s)	273, 343, 350
BciT130I	CCWGG	1 cut(s)	114
BcoDI	GTCTC	2 cut(s)	45, 355
BfaI	CTAG	1 cut(s)	382
BglI	GCCNNNNNGGC	1 cut(s)	157
BglII	AGATCT	2 cut(s)	241, 378
BisI	GCNGC	2 cut(s)	36, 143
BlsI	GCNGC	2 cut(s)	37, 144
Bme1390I	CCNGG	1 cut(s)	114
Bme18I	GGWCC	1 cut(s)	263
BmgT120I	GGNCC	1 cut(s)	263
BmrFI	CCNGG	1 cut(s)	114
BsaBI	GATNNNNATC	1 cut(s)	240
BsaHI	GRCGYC	1 cut(s)	38
BsaI	GGTCTC	1 cut(s)	355
BsaJI	CCNNGG	1 cut(s)	112
Bse8I	GATNNNNATC	1 cut(s)	240
BseBI	CCWGG	1 cut(s)	114
BseDI	CCNNGG	1 cut(s)	112
BseJI	GATNNNNATC	1 cut(s)	240
BseMII	CTCAG	1 cut(s)	287
BseRI	GAGGAG	2 cut(s)	33, 53
BseXI	GCAGC	1 cut(s)	154
BseYI	CCCAGC	1 cut(s)	26
BshFI	GGCC	1 cut(s)	108
BslFI	GGGAC	2 cut(s)	43, 212
BsmAI	GTCTC	2 cut(s)	45, 355
BsmBI	CGTCTC	1 cut(s)	45
BsmFI	GGGAC	2 cut(s)	43, 212
BsnI	GGCC	1 cut(s)	108
Bso31I	GGTCTC	1 cut(s)	355
Bsp143I	GATC	2 cut(s)	241, 378
BspACI	CCGC	1 cut(s)	35
BspANI	GGCC	1 cut(s)	108
BspCNI	CTCAG	1 cut(s)	286
BspTNI	GGTCTC	1 cut(s)	355
BssECI	CCNNGG	1 cut(s)	112
BssMI	GATC	2 cut(s)	241, 378
BssNAI	GTATAC	1 cut(s)	123
BssNI	GRCGYC	1 cut(s)	38
Bst1107I	GTATAC	1 cut(s)	123
Bst2UI	CCWGG	1 cut(s)	114
BstACI	GRCGYC	1 cut(s)	38
BstAPI	GCANNNNNTGC	1 cut(s)	148
BstDEI	CTNAG	1 cut(s)	273
BstKTI	GATC	2 cut(s)	244, 381
BstMAI	GTCTC	2 cut(s)	45, 355
BstMBI	GATC	2 cut(s)	241, 378
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 148, 157, 338
BstNI	CCWGG	1 cut(s)	114
BstNSI	RCATGY	1 cut(s)	149
BstSCI	CCNGG	1 cut(s)	112
BstV1I	GCAGC	1 cut(s)	154
BstX2I	RGATCY	2 cut(s)	241, 378
BstYI	RGATCY	2 cut(s)	241, 378
BstZ17I	GTATAC	1 cut(s)	123
BsuRI	GGCC	1 cut(s)	108
Cfr13I	GGNCC	1 cut(s)	263
CseI	GACGC	1 cut(s)	27
CviAII	CATG	2 cut(s)	146, 206
CviJI	RGCY	8 cut(s)	19, 26, 108, 173, 213, 225, 332, 341
CviKI_1	RGCY	8 cut(s)	19, 26, 108, 173, 213, 225, 332, 341
DdeI	CTNAG	1 cut(s)	273
DpnI	GATC	2 cut(s)	243, 380
DpnII	GATC	2 cut(s)	241, 378
DrdI	GACNNNNNNGTC	2 cut(s)	37, 92
DseDI	GACNNNNNNGTC	2 cut(s)	37, 92
Eco31I	GGTCTC	1 cut(s)	355
Eco47I	GGWCC	1 cut(s)	263
EcoRII	CCWGG	1 cut(s)	112
Esp3I	CGTCTC	1 cut(s)	45
FaeI	CATG	2 cut(s)	149, 209
FaiI	YATR	5 cut(s)	123, 147, 207, 289, 291
FaqI	GGGAC	2 cut(s)	43, 212
FatI	CATG	2 cut(s)	145, 205
FauNDI	CATATG	1 cut(s)	289
FblI	GTMKAC	1 cut(s)	122
Fnu4HI	GCNGC	2 cut(s)	36, 143
Fsp4HI	GCNGC	2 cut(s)	36, 143
FspBI	CTAG	1 cut(s)	382
GluI	GCNGC	2 cut(s)	36, 143
GsaI	CCCAGC	1 cut(s)	30
HaeIII	GGCC	1 cut(s)	108
HgaI	GACGC	1 cut(s)	27
Hin1I	GRCGYC	1 cut(s)	38
Hin1II	CATG	2 cut(s)	149, 209
HincII	GTYRAC	1 cut(s)	298
HindII	GTYRAC	1 cut(s)	298
HindIII	AAGCTT	2 cut(s)	17, 223
HinfI	GANTC	1 cut(s)	179
Hpy166II	GTNNAC	2 cut(s)	123, 298
Hpy188I	TCNGA	1 cut(s)	276
Hpy188III	TCNNGA	1 cut(s)	12
Hpy8I	GTNNAC	2 cut(s)	123, 298
HpyAV	CCTTC	1 cut(s)	298
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 148, 157, 338
HpyF3I	CTNAG	1 cut(s)	273
Hsp92I	GRCGYC	1 cut(s)	38
Hsp92II	CATG	2 cut(s)	149, 209
Kzo9I	GATC	2 cut(s)	241, 378
LmnI	GCTCC	2 cut(s)	23, 210
LpnPI	CCDG	6 cut(s)	12, 25, 99, 126, 152, 339
Lsp1109I	GCAGC	1 cut(s)	154
MaeI	CTAG	1 cut(s)	382
MalI	GATC	2 cut(s)	243, 380
MboI	GATC	2 cut(s)	241, 378
MflI	RGATCY	2 cut(s)	241, 378
MnlI	CCTC	6 cut(s)	19, 54, 74, 119, 276, 319
MseI	TTAA	1 cut(s)	309
MspA1I	CMGCKG	1 cut(s)	35
MspR9I	CCNGG	1 cut(s)	114
MvaI	CCWGG	1 cut(s)	114
MwoI	GCNNNNNNNGC	4 cut(s)	32, 148, 157, 338
NdeI	CATATG	1 cut(s)	289
NdeII	GATC	2 cut(s)	241, 378
NlaIII	CATG	2 cut(s)	149, 209
NspI	RCATGY	1 cut(s)	149
PfeI	GAWTC	1 cut(s)	179
PkrI	GCNGC	2 cut(s)	37, 144
Psp6I	CCWGG	1 cut(s)	112
PspFI	CCCAGC	1 cut(s)	26
PspGI	CCWGG	1 cut(s)	112
PspPI	GGNCC	1 cut(s)	263
PsuI	RGATCY	2 cut(s)	241, 378
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	2 cut(s)	36, 143
Sau3AI	GATC	2 cut(s)	241, 378
Sau96I	GGNCC	1 cut(s)	263
ScrFI	CCNGG	1 cut(s)	114
SetI	ASST	8 cut(s)	21, 28, 175, 215, 227, 268, 309, 351
SinI	GGWCC	1 cut(s)	263
SsiI	CCGC	1 cut(s)	35
SspMI	CTAG	1 cut(s)	382
StyD4I	CCNGG	1 cut(s)	112
TauI	GCSGC	1 cut(s)	38
TfiI	GAWTC	1 cut(s)	179
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TseI	GCWGC	1 cut(s)	142
TspDTI	ATGAA	1 cut(s)	194
TspGWI	ACGGA	1 cut(s)	140
VpaK11BI	GGWCC	1 cut(s)	263
XceI	RCATGY	1 cut(s)	149
XmiI	GTMKAC	1 cut(s)	122
XspI	CTAG	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.