Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0022990

Physical Location & Seq

Genomic Coordinates Reverse (-)

76782226 .. 76785067

Gene Structure 2842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG551200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGCGACGGCTGGTCGGTTTGTGCTTAGAAACCTGAGGATGAGAGTGGTATCAGTAGCAAACATGAAGATGGTTGATGTTATCACAACACCAATTCCCATATTGATGCCTTCTCGTCTGAACCTAAAATTGGGTTATTCCTCTGGTGGTGGTTTGTCAACATATGATCCAGCACTTGATTTTTTGAGACACATGGAGGAGAGTGAGAGAGATCGGCTTGAATACCTACAGAAGGTTGCGCAGAAGGCCTGTTCGCAGGATCCTGAGGTTGTAGCTTATGCCCGTTTTGCCGTGGAAGAGTTCAACAAGAGAGAGAATGCACAACTGCAATTTGTGAGAGGGCTATGTCCAGCATGTGTAGATTGTGATGGTCGTGTTTATTTGCTAAAGCTAGAAGCACTTGATGCTGATCATGGGCTCAAAACTTACCAAACTAAAGTTAAGGTTAAGGTCATCATGCATAACCGAGGAGTGGGTAAGGAAATCAATAAATCAGCGAAGCCGCAGTGGGGATTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0008150 GO:0009892 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0043086 GO:0044092 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cystatin SQAPI

Protein Analysis

173

Amino Acids

19.53

Weight (kDa)

9.32

Isoelectric Point (pI)

49.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQAPI	PF16845	86 - 156	1.7e-08	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0022990)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000036645
rosa_multiflora	Rmu_sc0003323.1_g000021
rosa_samantha	Rh5BG527100 Rh5CG551200

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	240
AciI	CCGC	1 cut(s)	503
AclWI	GGATC	3 cut(s)	161, 254, 267
AfiI	CCNNNNNNNGG	4 cut(s)	130, 232, 472, 509
AgsI	TTSAA	2 cut(s)	221, 304
AhdI	GACNNNNNGTC	1 cut(s)	12
AjuI	GAANNNNNNNTTGG	2 cut(s)	113, 145
AluBI	AGCT	2 cut(s)	275, 391
AluI	AGCT	2 cut(s)	275, 391
Alw26I	GTCTC	1 cut(s)	181
AlwI	GGATC	3 cut(s)	161, 254, 267
AoxI	GGCC	1 cut(s)	246
AspLEI	GCGC	1 cut(s)	241
AxyI	CCTNAGG	2 cut(s)	35, 264
BamHI	GGATCC	1 cut(s)	259
BanII	GRGCYC	1 cut(s)	420
BccI	CCATC	2 cut(s)	64, 362
BceAI	ACGGC	2 cut(s)	24, 275
BclI	TGATCA	1 cut(s)	409
BcoDI	GTCTC	1 cut(s)	181
BfaI	CTAG	1 cut(s)	392
BfmI	CTRYAG	1 cut(s)	227
BisI	GCNGC	1 cut(s)	503
BlsI	GCNGC	1 cut(s)	504
BmeRI	GACNNNNNGTC	1 cut(s)	12
BmiI	GGNNCC	1 cut(s)	261
BmsI	GCATC	2 cut(s)	96, 394
BsaBI	GATNNNNATC	1 cut(s)	408
BsaJI	CCNNGG	2 cut(s)	291, 466
Bsc4I	CCNNNNNNNGG	4 cut(s)	130, 232, 472, 509
Bse21I	CCTNAGG	2 cut(s)	35, 264
Bse8I	GATNNNNATC	1 cut(s)	408
BseDI	CCNNGG	2 cut(s)	291, 466
BseGI	GGATG	1 cut(s)	45
BseJI	GATNNNNATC	1 cut(s)	408
BseLI	CCNNNNNNNGG	4 cut(s)	130, 232, 472, 509
BseMII	CTCAG	2 cut(s)	26, 255
BseRI	GAGGAG	2 cut(s)	212, 483
BshFI	GGCC	1 cut(s)	248
BslI	CCNNNNNNNGG	4 cut(s)	130, 232, 472, 509
BsmAI	GTCTC	1 cut(s)	181
BsmI	GAATGC	1 cut(s)	322
BsnI	GGCC	1 cut(s)	248
Bsp1286I	GDGCHC	1 cut(s)	420
Bsp143I	GATC	4 cut(s)	166, 211, 259, 409
BspACI	CCGC	1 cut(s)	503
BspANI	GGCC	1 cut(s)	248
BspCNI	CTCAG	2 cut(s)	27, 256
BspLI	GGNNCC	1 cut(s)	261
BspPI	GGATC	3 cut(s)	161, 254, 267
BssECI	CCNNGG	2 cut(s)	291, 466
BssMI	GATC	4 cut(s)	166, 211, 259, 409
Bst6I	CTCTTC	1 cut(s)	291
BstAPI	GCANNNNNTGC	1 cut(s)	404
BstDEI	CTNAG	3 cut(s)	26, 35, 264
BstDSI	CCRYGG	1 cut(s)	291
BstENI	CCTNNNNNAGG	1 cut(s)	230
BstF5I	GGATG	1 cut(s)	45
BstHHI	GCGC	1 cut(s)	241
BstKTI	GATC	4 cut(s)	169, 214, 262, 412
BstMAI	GTCTC	1 cut(s)	181
BstMBI	GATC	4 cut(s)	166, 211, 259, 409
BstMWI	GCNNNNNNNGC	3 cut(s)	245, 287, 404
BstNSI	RCATGY	1 cut(s)	357
BstSFI	CTRYAG	1 cut(s)	227
BstX2I	RGATCY	1 cut(s)	259
BstYI	RGATCY	1 cut(s)	259
Bsu36I	CCTNAGG	2 cut(s)	35, 264
BsuRI	GGCC	1 cut(s)	248
BtgI	CCRYGG	1 cut(s)	291
BtsCI	GGATG	1 cut(s)	45
BtsI	GCAGTG	1 cut(s)	512
BtsIMutI	CAGTG	1 cut(s)	512
CfoI	GCGC	1 cut(s)	241
CviAII	CATG	5 cut(s)	64, 193, 354, 413, 457
CviJI	RGCY	8 cut(s)	11, 217, 248, 275, 343, 391, 418, 502
CviKI_1	RGCY	8 cut(s)	11, 217, 248, 275, 343, 391, 418, 502
DdeI	CTNAG	3 cut(s)	26, 35, 264
DpnI	GATC	4 cut(s)	168, 213, 261, 411
DpnII	GATC	4 cut(s)	166, 211, 259, 409
DriI	GACNNNNNGTC	1 cut(s)	12
Eam1104I	CTCTTC	1 cut(s)	291
Eam1105I	GACNNNNNGTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	291
Eco147I	AGGCCT	1 cut(s)	248
Eco24I	GRGCYC	1 cut(s)	420
Eco81I	CCTNAGG	2 cut(s)	35, 264
EcoNI	CCTNNNNNAGG	1 cut(s)	230
EcoT22I	ATGCAT	1 cut(s)	462
EcoT38I	GRGCYC	1 cut(s)	420
FaeI	CATG	5 cut(s)	67, 196, 357, 416, 460
FatI	CATG	5 cut(s)	63, 192, 353, 412, 456
FauNDI	CATATG	1 cut(s)	163
FbaI	TGATCA	1 cut(s)	409
Fnu4HI	GCNGC	1 cut(s)	503
FokI	GGATG	1 cut(s)	52
FriOI	GRGCYC	1 cut(s)	420
Fsp4HI	GCNGC	1 cut(s)	503
FspBI	CTAG	1 cut(s)	392
FspI	TGCGCA	1 cut(s)	240
GlaI	GCGC	1 cut(s)	240
GluI	GCNGC	1 cut(s)	503
HaeIII	GGCC	1 cut(s)	248
HhaI	GCGC	1 cut(s)	241
Hin1II	CATG	5 cut(s)	67, 196, 357, 416, 460
Hin6I	GCGC	1 cut(s)	239
HinP1I	GCGC	1 cut(s)	239
HincII	GTYRAC	1 cut(s)	159
HindII	GTYRAC	1 cut(s)	159
Hpy166II	GTNNAC	1 cut(s)	159
Hpy188I	TCNGA	1 cut(s)	120
Hpy188III	TCNNGA	1 cut(s)	263
Hpy8I	GTNNAC	1 cut(s)	159
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	3 cut(s)	120, 226, 238
HpyCH4V	TGCA	3 cut(s)	320, 328, 460
HpyF10VI	GCNNNNNNNGC	3 cut(s)	245, 287, 404
HpyF3I	CTNAG	3 cut(s)	26, 35, 264
Hsp92II	CATG	5 cut(s)	67, 196, 357, 416, 460
HspAI	GCGC	1 cut(s)	239
Ksp22I	TGATCA	1 cut(s)	409
Kzo9I	GATC	4 cut(s)	166, 211, 259, 409
LpnPI	CCDG	7 cut(s)	47, 129, 183, 242, 262, 276, 363
LweI	GCATC	2 cut(s)	96, 394
MaeI	CTAG	1 cut(s)	392
MalI	GATC	4 cut(s)	168, 213, 261, 411
MboI	GATC	4 cut(s)	166, 211, 259, 409
MboII	GAAGA	2 cut(s)	79, 308
MflI	RGATCY	1 cut(s)	259
MhlI	GDGCHC	1 cut(s)	420
MluCI	AATT	3 cut(s)	93, 128, 329
MnlI	CCTC	6 cut(s)	30, 151, 190, 259, 332, 461
Mph1103I	ATGCAT	1 cut(s)	462
MseI	TTAA	2 cut(s)	441, 447
MslI	CAYNNNNRTG	2 cut(s)	68, 104
Mva1269I	GAATGC	1 cut(s)	322
MwoI	GCNNNNNNNGC	3 cut(s)	245, 287, 404
NdeI	CATATG	1 cut(s)	163
NdeII	GATC	4 cut(s)	166, 211, 259, 409
NlaIII	CATG	5 cut(s)	67, 196, 357, 416, 460
NlaIV	GGNNCC	1 cut(s)	261
NsbI	TGCGCA	1 cut(s)	240
NsiI	ATGCAT	1 cut(s)	462
NspI	RCATGY	1 cut(s)	357
PceI	AGGCCT	1 cut(s)	248
PctI	GAATGC	1 cut(s)	322
PkrI	GCNGC	1 cut(s)	504
PspN4I	GGNNCC	1 cut(s)	261
PsuI	RGATCY	1 cut(s)	259
RseI	CAYNNNNRTG	2 cut(s)	68, 104
SaqAI	TTAA	2 cut(s)	441, 447
SatI	GCNGC	1 cut(s)	503
Sau3AI	GATC	4 cut(s)	166, 211, 259, 409
SduI	GDGCHC	1 cut(s)	420
SetI	ASST	9 cut(s)	36, 126, 228, 237, 270, 277, 393, 447, 453
SfaNI	GCATC	2 cut(s)	96, 394
SfcI	CTRYAG	1 cut(s)	227
SmiMI	CAYNNNNRTG	2 cut(s)	68, 104
Sse9I	AATT	3 cut(s)	93, 128, 329
SseBI	AGGCCT	1 cut(s)	248
SsiI	CCGC	1 cut(s)	503
SspMI	CTAG	1 cut(s)	392
StuI	AGGCCT	1 cut(s)	248
TasI	AATT	3 cut(s)	93, 128, 329
TauI	GCSGC	1 cut(s)	505
Tru1I	TTAA	2 cut(s)	441, 447
Tru9I	TTAA	2 cut(s)	441, 447
TscAI	CASTG	1 cut(s)	512
TspDTI	ATGAA	1 cut(s)	80
TspRI	CASTG	1 cut(s)	512
XagI	CCTNNNNNAGG	1 cut(s)	230
XceI	RCATGY	1 cut(s)	357
XspI	CTAG	1 cut(s)	392
Zsp2I	ATGCAT	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.