Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0024998

Physical Location & Seq

Genomic Coordinates Forward (+)

21098985 .. 21112427

Gene Structure 13443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG190400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGTATTAAAAAGGCCAGACATTGTAAAAACGACTGATGCAATTGGATGGACTCCGTTGCACTACGCAGCATTGAGAGGGTACCTTAACGTAACTAGAGTATTGCTGAATTGCGATAGTTCTACACTTTATATTTTGGATAAAACTGGAATGTCGGCTCTCCATGTCGCGGCTTGTGCAGGTCACACTAAAGTATTGAAAGAGTTCATTCGACGTCGGCCTGATGCTTGTGATTTGCTCAATGATAAAGGCCAAAACATTCTTCACTATGCAATTTTAGGTGAATGTATATTTGTCGTCAAGTACATATTGAAGACCGCTAAACTTGCCAGGCTCATAAATGAAGCAGATAATGATGGAAACACTCCTCTGCATCTAGCTGCCATTTACAGAATAGAGGACTCTATTATCGGAAGTTTCGCATCCGATCCTAGAGTTGATAGGACTGCTATTAATAACGAGTTCTTACATGCCGTCGACATCTATGTTCGCCGCAATTTTAAACTGAATCCTTTCACAGCTCTCCCCTCCATCCGCTTGGGGAATTCTGTTGGCGTACCATTTCTTCACGAAAAAATCCTTCACGAGTTCGTGGCATTAGAATCTAAGAAGAAGGATATGTCCGACATACAACCCAATATTGCAGACAAGAGCGAAAAGTTGCAAGACAATGGAGATACACTTCCACAATTATATGATAGCAATCTACTGGTAGCAGTGCTAATTGCCACGGTTACATTTACGGCAGCTTTGACAATGCCGGGAGGATATAAGAGCGACGGGACACCAGTTTTACAAGGAAAGGCATTCTTCGTACTGTTTCTGTTAACCAACACCTTATCTTTCTTTACATCAATTTTTGCGGTGTTTGCCCATTTTCTGAGTACAAATGTTGTTCCGGTAAAAGTTTTCAACCAGACCATCCCACGCATGATTGTGTCTGCCCTTGTTGAAATGGTGATAGCATTTTCTTCAGCTATTTATGCAGTGGTGTCCAAACACAATCAACCCTTCTCCATTTTATTCATCGTAGCATGTGGCTGTTATTGCAGTTATGTCATTAATTTGTTCTACGGGTTACCGCGGAAACGCCTCAGGGAGATGCGATGGTTCCGAACCCGTAGATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_4 Ank_5 PGG

Protein Analysis

376

Amino Acids

42.15

Weight (kDa)

9.28

Isoelectric Point (pI)

43.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	11 - 70	2.5e-10	Ankyrin repeats (3 copies)
Ank_2	PF12796	61 - 133	1.7e-08	Ankyrin repeats (3 copies)
PGG	PF13962	233 - 330	4e-21	Domain of unknown function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024998)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0027101
rosa_rugosa	Rorug05G0097400
rosa_samantha	Rh5DG190400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	217
Acc36I	ACCTGC	1 cut(s)	170
Acc65I	GGTACC	1 cut(s)	81
AccB1I	GGYRCC	1 cut(s)	81
AccI	GTMKAC	1 cut(s)	477
AccII	CGCG	2 cut(s)	170, 1084
AciI	CCGC	7 cut(s)	170, 318, 493, 535, 863, 1082, 1084
AclWI	GGATC	1 cut(s)	422
AcsI	RAATTY	1 cut(s)	544
AcuI	CTGAAG	1 cut(s)	957
AcyI	GRCGYC	1 cut(s)	214
AfaI	GTAC	5 cut(s)	83, 305, 558, 816, 886
AfiI	CCNNNNNNNGG	1 cut(s)	169
AgsI	TTSAA	4 cut(s)	199, 313, 913, 953
AjnI	CCWGG	1 cut(s)	329
AjuI	GAANNNNNNNTTGG	2 cut(s)	246, 278
AluBI	AGCT	4 cut(s)	380, 521, 749, 977
AluI	AGCT	4 cut(s)	380, 521, 749, 977
AlwI	GGATC	1 cut(s)	422
AoxI	GGCC	3 cut(s)	14, 218, 250
ApeKI	GCWGC	3 cut(s)	68, 380, 746
ApoI	RAATTY	1 cut(s)	544
AseI	ATTAAT	2 cut(s)	453, 1062
Asp700I	GAANNNNTTC	2 cut(s)	203, 512
Asp718I	GGTACC	1 cut(s)	81
AsuC2I	CCSGG	1 cut(s)	762
AsuHPI	GGTGA	2 cut(s)	293, 970
AxyI	CCTNAGG	1 cut(s)	1094
BanI	GGYRCC	1 cut(s)	81
BarI	GAAGNNNNNNTAC	2 cut(s)	549, 581
BauI	CACGAG	1 cut(s)	584
BbsI	GAAGAC	1 cut(s)	320
BbvI	GCAGC	3 cut(s)	80, 367, 758
BccI	CCATC	5 cut(s)	42, 350, 539, 929, 1101
BceAI	ACGGC	2 cut(s)	458, 759
BciT130I	CCWGG	1 cut(s)	331
BcnI	CCSGG	1 cut(s)	762
BfaI	CTAG	3 cut(s)	96, 377, 432
BfuAI	ACCTGC	1 cut(s)	170
BisI	GCNGC	5 cut(s)	69, 171, 381, 493, 747
BlsI	GCNGC	5 cut(s)	70, 172, 382, 494, 748
Bme1390I	CCNGG	2 cut(s)	331, 762
BmiI	GGNNCC	2 cut(s)	83, 1112
BmrFI	CCNGG	2 cut(s)	331, 762
BmsI	GCATC	5 cut(s)	28, 214, 382, 431, 1092
BpiI	GAAGAC	1 cut(s)	320
BpuMI	CCSGG	1 cut(s)	762
BsaBI	GATNNNNATC	1 cut(s)	702
BsaHI	GRCGYC	1 cut(s)	214
BsaJI	CCNNGG	2 cut(s)	729, 1082
BsaWI	WCCGGW	1 cut(s)	898
Bsc4I	CCNNNNNNNGG	1 cut(s)	169
Bse1I	ACTGG	3 cut(s)	151, 714, 788
Bse21I	CCTNAGG	1 cut(s)	1094
Bse8I	GATNNNNATC	1 cut(s)	702
BseBI	CCWGG	1 cut(s)	331
BseDI	CCNNGG	2 cut(s)	729, 1082
BseGI	GGATG	4 cut(s)	53, 422, 531, 921
BseJI	GATNNNNATC	1 cut(s)	702
BseLI	CCNNNNNNNGG	1 cut(s)	169
BseMII	CTCAG	2 cut(s)	872, 1108
BseNI	ACTGG	3 cut(s)	151, 714, 788
BseRI	GAGGAG	1 cut(s)	357
BseXI	GCAGC	3 cut(s)	80, 367, 758
BsgI	GTGCAG	1 cut(s)	198
Bsh1236I	CGCG	2 cut(s)	170, 1084
BshFI	GGCC	3 cut(s)	16, 220, 252
BshNI	GGYRCC	1 cut(s)	81
BsiSI	CCGG	2 cut(s)	761, 899
BslFI	GGGAC	1 cut(s)	796
BslI	CCNNNNNNNGG	1 cut(s)	169
BsmFI	GGGAC	1 cut(s)	796
BsmI	GAATGC	1 cut(s)	806
BsnI	GGCC	3 cut(s)	16, 220, 252
Bsp143I	GATC	1 cut(s)	427
BspACI	CCGC	7 cut(s)	170, 318, 493, 535, 863, 1082, 1084
BspANI	GGCC	3 cut(s)	16, 220, 252
BspCNI	CTCAG	2 cut(s)	873, 1107
BspFNI	CGCG	2 cut(s)	170, 1084
BspLI	GGNNCC	2 cut(s)	83, 1112
BspMI	ACCTGC	1 cut(s)	170
BspPI	GGATC	1 cut(s)	422
BspT107I	GGYRCC	1 cut(s)	81
BsrI	ACTGG	3 cut(s)	151, 714, 788
BssECI	CCNNGG	2 cut(s)	729, 1082
BssMI	GATC	1 cut(s)	427
BssNI	GRCGYC	1 cut(s)	214
BssSI	CACGAG	1 cut(s)	584
Bst2BI	CACGAG	1 cut(s)	584
Bst2UI	CCWGG	1 cut(s)	331
Bst4CI	ACNGT	2 cut(s)	733, 819
BstACI	GRCGYC	1 cut(s)	214
BstDEI	CTNAG	3 cut(s)	606, 881, 1094
BstDSI	CCRYGG	2 cut(s)	729, 1082
BstEII	GGTNACC	1 cut(s)	1077
BstF5I	GGATG	4 cut(s)	53, 422, 531, 921
BstFNI	CGCG	2 cut(s)	170, 1084
BstKTI	GATC	1 cut(s)	430
BstMBI	GATC	1 cut(s)	427
BstMWI	GCNNNNNNNGC	5 cut(s)	176, 326, 869, 983, 1047
BstNI	CCWGG	1 cut(s)	331
BstNSI	RCATGY	2 cut(s)	473, 1038
BstPI	GGTNACC	1 cut(s)	1077
BstSCI	CCNGG	2 cut(s)	329, 760
BstUI	CGCG	2 cut(s)	170, 1084
BstV1I	GCAGC	3 cut(s)	80, 367, 758
BstV2I	GAAGAC	1 cut(s)	320
BstXI	CCANNNNNNTGG	1 cut(s)	538
Bsu36I	CCTNAGG	1 cut(s)	1094
BsuRI	GGCC	3 cut(s)	16, 220, 252
BtgI	CCRYGG	2 cut(s)	729, 1082
BtgZI	GCGATG	1 cut(s)	1120
BtsCI	GGATG	4 cut(s)	53, 422, 531, 921
BtsI	GCAGTG	2 cut(s)	723, 993
BtsIMutI	CAGTG	2 cut(s)	723, 993
BveI	ACCTGC	1 cut(s)	170
Cfr42I	CCGCGG	1 cut(s)	1085
Csp6I	GTAC	5 cut(s)	82, 304, 557, 815, 885
CviAII	CATG	4 cut(s)	164, 470, 931, 1035
CviQI	GTAC	5 cut(s)	82, 304, 557, 815, 885
DdeI	CTNAG	3 cut(s)	606, 881, 1094
DpnI	GATC	1 cut(s)	429
DpnII	GATC	1 cut(s)	427
DraI	TTTAAA	1 cut(s)	502
Eco57I	CTGAAG	1 cut(s)	957
Eco81I	CCTNAGG	1 cut(s)	1094
Eco91I	GGTNACC	1 cut(s)	1077
EcoO65I	GGTNACC	1 cut(s)	1077
EcoRI	GAATTC	1 cut(s)	544
EcoRII	CCWGG	1 cut(s)	329
FaeI	CATG	4 cut(s)	167, 473, 934, 1038
FalI	AAGNNNNNCTT	2 cut(s)	794, 826
FaqI	GGGAC	1 cut(s)	796
FatI	CATG	4 cut(s)	163, 469, 930, 1034
FblI	GTMKAC	1 cut(s)	477
Fnu4HI	GCNGC	5 cut(s)	69, 171, 381, 493, 747
FokI	GGATG	4 cut(s)	60, 409, 518, 908
Fsp4HI	GCNGC	5 cut(s)	69, 171, 381, 493, 747
FspBI	CTAG	3 cut(s)	96, 377, 432
GluI	GCNGC	5 cut(s)	69, 171, 381, 493, 747
HaeIII	GGCC	3 cut(s)	16, 220, 252
HapII	CCGG	2 cut(s)	761, 899
Hin1I	GRCGYC	1 cut(s)	214
Hin1II	CATG	4 cut(s)	167, 473, 934, 1038
HincII	GTYRAC	2 cut(s)	478, 828
HindII	GTYRAC	2 cut(s)	478, 828
HinfI	GANTC	4 cut(s)	52, 401, 508, 602
HpaI	GTTAAC	1 cut(s)	828
HpaII	CCGG	2 cut(s)	761, 899
HphI	GGTGA	2 cut(s)	293, 970
Hpy166II	GTNNAC	2 cut(s)	478, 828
Hpy188I	TCNGA	5 cut(s)	413, 427, 625, 882, 1115
Hpy188III	TCNNGA	2 cut(s)	569, 584
Hpy8I	GTNNAC	2 cut(s)	478, 828
Hpy99I	CGWCG	4 cut(s)	216, 219, 479, 782
HpyAV	CCTTC	3 cut(s)	590, 607, 1021
HpyCH4III	ACNGT	2 cut(s)	733, 819
HpyCH4IV	ACGT	2 cut(s)	90, 214
HpyCH4V	TGCA	9 cut(s)	41, 61, 179, 272, 373, 644, 664, 986, 1050
HpyF10VI	GCNNNNNNNGC	5 cut(s)	176, 326, 869, 983, 1047
HpyF3I	CTNAG	3 cut(s)	606, 881, 1094
HpySE526I	ACGT	2 cut(s)	90, 214
Hsp92I	GRCGYC	1 cut(s)	214
Hsp92II	CATG	4 cut(s)	167, 473, 934, 1038
KpnI	GGTACC	1 cut(s)	85
KspAI	GTTAAC	1 cut(s)	828
KspI	CCGCGG	1 cut(s)	1085
Kzo9I	GATC	1 cut(s)	427
Lsp1109I	GCAGC	3 cut(s)	80, 367, 758
LweI	GCATC	5 cut(s)	28, 214, 382, 431, 1092
MaeI	CTAG	3 cut(s)	96, 377, 432
MaeII	ACGT	2 cut(s)	90, 214
MaeIII	GTNAC	4 cut(s)	91, 182, 733, 1077
MalI	GATC	1 cut(s)	429
MboI	GATC	1 cut(s)	427
MboII	GAAGA	6 cut(s)	254, 325, 557, 622, 802, 963
MfeI	CAATTG	1 cut(s)	42
MluCI	AATT	9 cut(s)	42, 109, 273, 496, 544, 689, 723, 855, 1063
MlyI	GAGTC	2 cut(s)	46, 395
MmeI	TCCRAC	1 cut(s)	648
MnlI	CCTC	6 cut(s)	71, 378, 391, 538, 758, 1103
MroXI	GAANNNNTTC	2 cut(s)	203, 512
MseI	TTAA	6 cut(s)	8, 87, 453, 501, 827, 1062
MslI	CAYNNNNRTG	1 cut(s)	935
MspA1I	CMGCKG	1 cut(s)	1084
MspI	CCGG	2 cut(s)	761, 899
MspR9I	CCNGG	2 cut(s)	331, 762
MunI	CAATTG	1 cut(s)	42
Mva1269I	GAATGC	1 cut(s)	806
MvaI	CCWGG	1 cut(s)	331
MvnI	CGCG	2 cut(s)	170, 1084
MwoI	GCNNNNNNNGC	5 cut(s)	176, 326, 869, 983, 1047
NciI	CCSGG	1 cut(s)	762
NdeII	GATC	1 cut(s)	427
NlaIII	CATG	4 cut(s)	167, 473, 934, 1038
NlaIV	GGNNCC	2 cut(s)	83, 1112
NmuCI	GTSAC	1 cut(s)	182
NspI	RCATGY	2 cut(s)	473, 1038
PctI	GAATGC	1 cut(s)	806
PdmI	GAANNNNTTC	2 cut(s)	203, 512
PfeI	GAWTC	2 cut(s)	508, 602
PkrI	GCNGC	5 cut(s)	70, 172, 382, 494, 748
PleI	GAGTC	2 cut(s)	46, 395
PpsI	GAGTC	2 cut(s)	46, 395
PshBI	ATTAAT	2 cut(s)	453, 1062
Psp6I	CCWGG	1 cut(s)	329
PspEI	GGTNACC	1 cut(s)	1077
PspGI	CCWGG	1 cut(s)	329
PspN4I	GGNNCC	2 cut(s)	83, 1112
RsaI	GTAC	5 cut(s)	83, 305, 558, 816, 886
RsaNI	GTAC	5 cut(s)	82, 304, 557, 815, 885
RseI	CAYNNNNRTG	1 cut(s)	935
SacII	CCGCGG	1 cut(s)	1085
SalI	GTCGAC	1 cut(s)	476
SaqAI	TTAA	6 cut(s)	8, 87, 453, 501, 827, 1062
SatI	GCNGC	5 cut(s)	69, 171, 381, 493, 747
Sau3AI	GATC	1 cut(s)	427
SchI	GAGTC	2 cut(s)	46, 395
ScrFI	CCNGG	2 cut(s)	331, 762
SfaNI	GCATC	5 cut(s)	28, 214, 382, 431, 1092
Sfr303I	CCGCGG	1 cut(s)	1085
SgrBI	CCGCGG	1 cut(s)	1085
SmiMI	CAYNNNNRTG	1 cut(s)	935
Sse9I	AATT	9 cut(s)	42, 109, 273, 496, 544, 689, 723, 855, 1063
SsiI	CCGC	7 cut(s)	170, 318, 493, 535, 863, 1082, 1084
SspI	AATATT	1 cut(s)	640
SspMI	CTAG	3 cut(s)	96, 377, 432
StyD4I	CCNGG	2 cut(s)	329, 760
TaaI	ACNGT	2 cut(s)	733, 819
TaiI	ACGT	2 cut(s)	93, 217
TaqI	TCGA	2 cut(s)	211, 477
TasI	AATT	9 cut(s)	42, 109, 273, 496, 544, 689, 723, 855, 1063
TatI	WGTACW	2 cut(s)	303, 884
TauI	GCSGC	2 cut(s)	173, 495
TfiI	GAWTC	2 cut(s)	508, 602
Tru1I	TTAA	6 cut(s)	8, 87, 453, 501, 827, 1062
Tru9I	TTAA	6 cut(s)	8, 87, 453, 501, 827, 1062
TscAI	CASTG	2 cut(s)	723, 993
TseFI	GTSAC	1 cut(s)	182
TseI	GCWGC	3 cut(s)	68, 380, 746
Tsp45I	GTSAC	1 cut(s)	182
TspDTI	ATGAA	3 cut(s)	196, 357, 1015
TspGWI	ACGGA	1 cut(s)	45
TspRI	CASTG	2 cut(s)	723, 993
VspI	ATTAAT	2 cut(s)	453, 1062
XapI	RAATTY	1 cut(s)	544
XceI	RCATGY	2 cut(s)	473, 1038
XmiI	GTMKAC	1 cut(s)	477
XmnI	GAANNNNTTC	2 cut(s)	203, 512
XspI	CTAG	3 cut(s)	96, 377, 432
ZraI	GACGTC	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.