Rh5DG258800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0031045
Physical Location & Seq
Forward (+)
30836622 .. 30837062
441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG258800.1

Sequence Viewer

Length: 441 bp
ATGGCCCGAGCTCCTATAGATGGGGTGCATATCTCCGGTCGTGGTCACTCTACCACTCATAGATCGAGGAGGAAGTCCAAGGACGTTTCTGGTCCTCCCACTCGCAGCGGAGCTGCTCCGCCATGCAATGTGGATGCAATTAATGTTAGTGAGAGTAATGGTCTGGTGGATAAGAACAGTTCAACAAGCCAGATGGATGTTAATCTAATGGCAAGTGTTGTGAAGTCTGGTGCCATCCTTGAGACAATTGTGGTGAATGATGGTGCAGAAAATGGCTTGGTTATGCAGCAAACTTCTAACCAGGCTTCTTCCTCTGAGAGTGTCCCACCTGGCTTTCAGAGGCTACCCACGGGAAGTTTGAAGGAGGCTAAGACAGTTAGTATTCATCAGATAGTGTTACTAAGTCGCCAATTAGTGACTTGGGAAGAGGGGCAGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

15.43

Weight (kDa)

7.97

Isoelectric Point (pI)

40.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031045)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000149.1_g000050
rosa_samantha Rh5DG258800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 230
AciI CCGC 2 cut(s) 108, 119
AfiI CCNNNNNNNGG 1 cut(s) 20
AgsI TTSAA 2 cut(s) 183, 361
AjnI CCWGG 2 cut(s) 300, 328
AluBI AGCT 2 cut(s) 11, 113
AluI AGCT 2 cut(s) 11, 113
Alw21I GWGCWC 1 cut(s) 13
Alw26I GTCTC 1 cut(s) 236
Ama87I CYCGRG 1 cut(s) 6
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 3 cut(s) 105, 113, 286
AseI ATTAAT 1 cut(s) 141
AspS9I GGNCC 2 cut(s) 4, 92
AsuHPI GGTGA 1 cut(s) 265
AvaI CYCGRG 1 cut(s) 6
AvaII GGWCC 1 cut(s) 92
BanI GGYRCC 1 cut(s) 230
BanII GRGCYC 1 cut(s) 13
Bbv12I GWGCWC 1 cut(s) 13
BbvI GCAGC 3 cut(s) 100, 117, 298
BccI CCATC 4 cut(s) 14, 187, 242, 254
BciT130I CCWGG 2 cut(s) 302, 330
BcoDI GTCTC 1 cut(s) 236
BfmI CTRYAG 1 cut(s) 15
BisI GCNGC 3 cut(s) 106, 114, 287
BlsI GCNGC 3 cut(s) 107, 115, 288
Bme1390I CCNGG 2 cut(s) 302, 330
Bme18I GGWCC 1 cut(s) 92
BmeT110I CYCGRG 1 cut(s) 6
BmgT120I GGNCC 2 cut(s) 4, 92
BmiI GGNNCC 1 cut(s) 232
BmrFI CCNGG 2 cut(s) 302, 330
BmsI GCATC 1 cut(s) 124
BpuEI CTTGAG 1 cut(s) 260
BsaBI GATNNNNATC 1 cut(s) 201
BsaJI CCNNGG 2 cut(s) 78, 348
BsaWI WCCGGW 1 cut(s) 35
Bsc4I CCNNNNNNNGG 1 cut(s) 20
Bse3DI GCAATG 1 cut(s) 133
Bse8I GATNNNNATC 1 cut(s) 201
BseBI CCWGG 2 cut(s) 302, 330
BseDI CCNNGG 2 cut(s) 78, 348
BseGI GGATG 3 cut(s) 139, 202, 234
BseJI GATNNNNATC 1 cut(s) 201
BseLI CCNNNNNNNGG 1 cut(s) 20
BseMI GCAATG 1 cut(s) 133
BseMII CTCAG 1 cut(s) 306
BseRI GAGGAG 1 cut(s) 82
BseXI GCAGC 3 cut(s) 100, 117, 298
BsgI GTGCAG 1 cut(s) 285
Bsh1285I CGRYCG 1 cut(s) 40
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 230
BsiEI CGRYCG 1 cut(s) 40
BsiHKAI GWGCWC 1 cut(s) 13
BsiHKCI CYCGRG 1 cut(s) 6
BsiSI CCGG 1 cut(s) 36
BslFI GGGAC 1 cut(s) 308
BslI CCNNNNNNNGG 1 cut(s) 20
BsmAI GTCTC 1 cut(s) 236
BsmFI GGGAC 1 cut(s) 308
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 6
Bsp1286I GDGCHC 1 cut(s) 13
Bsp143I GATC 1 cut(s) 62
BspACI CCGC 2 cut(s) 108, 119
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 307
BspLI GGNNCC 1 cut(s) 232
BspT107I GGYRCC 1 cut(s) 230
BsrDI GCAATG 1 cut(s) 133
BssECI CCNNGG 2 cut(s) 78, 348
BssMI GATC 1 cut(s) 62
BssT1I CCWWGG 1 cut(s) 78
Bst2UI CCWGG 2 cut(s) 302, 330
Bst4CI ACNGT 2 cut(s) 179, 376
Bst6I CTCTTC 1 cut(s) 420
BstDEI CTNAG 3 cut(s) 315, 369, 401
BstDSI CCRYGG 1 cut(s) 348
BstF5I GGATG 3 cut(s) 139, 202, 234
BstKTI GATC 1 cut(s) 65
BstMAI GTCTC 1 cut(s) 236
BstMBI GATC 1 cut(s) 62
BstMCI CGRYCG 1 cut(s) 40
BstNI CCWGG 2 cut(s) 302, 330
BstSCI CCNGG 2 cut(s) 300, 328
BstSFI CTRYAG 1 cut(s) 15
BstV1I GCAGC 3 cut(s) 100, 117, 298
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 348
BtsCI GGATG 3 cut(s) 139, 202, 234
Cfr13I GGNCC 2 cut(s) 4, 92
CviAII CATG 1 cut(s) 123
CviJI RGCY 9 cut(s) 5, 11, 113, 189, 276, 305, 333, 343, 368
CviKI_1 RGCY 9 cut(s) 5, 11, 113, 189, 276, 305, 333, 343, 368
DdeI CTNAG 3 cut(s) 315, 369, 401
DpnI GATC 1 cut(s) 64
DpnII GATC 1 cut(s) 62
Eam1104I CTCTTC 1 cut(s) 420
EarI CTCTTC 1 cut(s) 420
EciI GGCGGA 1 cut(s) 108
Ecl136II GAGCTC 1 cut(s) 11
Eco130I CCWWGG 1 cut(s) 78
Eco24I GRGCYC 1 cut(s) 13
Eco47I GGWCC 1 cut(s) 92
Eco53kI GAGCTC 1 cut(s) 11
Eco88I CYCGRG 1 cut(s) 6
EcoICRI GAGCTC 1 cut(s) 11
EcoRII CCWGG 2 cut(s) 300, 328
EcoT14I CCWWGG 1 cut(s) 78
EcoT38I GRGCYC 1 cut(s) 13
ErhI CCWWGG 1 cut(s) 78
FaeI CATG 1 cut(s) 126
FaiI YATR 5 cut(s) 17, 30, 60, 124, 284
FaqI GGGAC 1 cut(s) 308
FatI CATG 1 cut(s) 122
Fnu4HI GCNGC 3 cut(s) 106, 114, 287
FokI GGATG 3 cut(s) 146, 209, 221
FriOI GRGCYC 1 cut(s) 13
Fsp4HI GCNGC 3 cut(s) 106, 114, 287
GluI GCNGC 3 cut(s) 106, 114, 287
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 36
Hin1II CATG 1 cut(s) 126
HpaII CCGG 1 cut(s) 36
HphI GGTGA 1 cut(s) 265
Hpy188I TCNGA 3 cut(s) 316, 339, 390
HpyAV CCTTC 1 cut(s) 355
HpyCH4III ACNGT 2 cut(s) 179, 376
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 5 cut(s) 28, 126, 137, 266, 286
HpyF3I CTNAG 3 cut(s) 315, 369, 401
HpySE526I ACGT 1 cut(s) 84
Hsp92II CATG 1 cut(s) 126
Kzo9I GATC 1 cut(s) 62
LmnI GCTCC 3 cut(s) 16, 110, 121
LpnPI CCDG 9 cut(s) 49, 75, 149, 203, 213, 287, 314, 315, 342
Lsp1109I GCAGC 3 cut(s) 100, 117, 298
LweI GCATC 1 cut(s) 124
MaeII ACGT 1 cut(s) 84
MaeIII GTNAC 3 cut(s) 44, 396, 415
MalI GATC 1 cut(s) 64
MboI GATC 1 cut(s) 62
MboII GAAGA 2 cut(s) 300, 437
MfeI CAATTG 1 cut(s) 246
MhlI GDGCHC 1 cut(s) 13
MluCI AATT 3 cut(s) 138, 246, 410
MnlI CCTC 7 cut(s) 60, 63, 105, 322, 333, 358, 421
MseI TTAA 3 cut(s) 141, 201, 439
MspA1I CMGCKG 1 cut(s) 108
MspI CCGG 1 cut(s) 36
MspR9I CCNGG 2 cut(s) 302, 330
MunI CAATTG 1 cut(s) 246
MvaI CCWGG 2 cut(s) 302, 330
NdeII GATC 1 cut(s) 62
NlaIII CATG 1 cut(s) 126
NlaIV GGNNCC 1 cut(s) 232
NmuCI GTSAC 2 cut(s) 44, 415
PkrI GCNGC 3 cut(s) 107, 115, 288
PshBI ATTAAT 1 cut(s) 141
Psp124BI GAGCTC 1 cut(s) 13
Psp6I CCWGG 2 cut(s) 300, 328
PspGI CCWGG 2 cut(s) 300, 328
PspN4I GGNNCC 1 cut(s) 232
PspPI GGNCC 2 cut(s) 4, 92
SacI GAGCTC 1 cut(s) 13
SaqAI TTAA 3 cut(s) 141, 201, 439
SatI GCNGC 3 cut(s) 106, 114, 287
Sau3AI GATC 1 cut(s) 62
Sau96I GGNCC 2 cut(s) 4, 92
ScrFI CCNGG 2 cut(s) 302, 330
SduI GDGCHC 1 cut(s) 13
SetI ASST 4 cut(s) 13, 87, 115, 331
SfaNI GCATC 1 cut(s) 124
SfcI CTRYAG 1 cut(s) 15
SinI GGWCC 1 cut(s) 92
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
Sse9I AATT 3 cut(s) 138, 246, 410
SsiI CCGC 2 cut(s) 108, 119
SstI GAGCTC 1 cut(s) 13
StyD4I CCNGG 2 cut(s) 300, 328
StyI CCWWGG 1 cut(s) 78
TaaI ACNGT 2 cut(s) 179, 376
TaiI ACGT 1 cut(s) 87
TaqI TCGA 1 cut(s) 65
TasI AATT 3 cut(s) 138, 246, 410
Tru1I TTAA 3 cut(s) 141, 201, 439
Tru9I TTAA 3 cut(s) 141, 201, 439
TseFI GTSAC 2 cut(s) 44, 415
TseI GCWGC 3 cut(s) 105, 113, 286
Tsp45I GTSAC 2 cut(s) 44, 415
TspDTI ATGAA 1 cut(s) 374
VpaK11BI GGWCC 1 cut(s) 92
VspI ATTAAT 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.