Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0024959

Physical Location & Seq

Genomic Coordinates Reverse (-)

41118692 .. 41120498

Gene Structure 1807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG319200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGCAAAAGCAGTCTTTGCTACTGCTATGTTCCGAAAAAGCAGCATACATATATTCCTTCACACATGTCATGCTGGGAGTTAAGAAGGTAATATACAAGAAGAAATTTCAATCATCTTGTTGCTGGGCATCGACATTCTACACCTCTGATGTTGGCCTTATACTCGTTTTTACAACTGGAAAAATTGAGATAAGGTCCTTGCATGACTTATCTTTGATAAAGGAGACTTCAATAAGGGCCTTCACATATTCCACATCAAAACTAAATTCACATGCTGGCAATTCGATATGCTCTTCATCCGAAGGAGAACTTGTTATGGTGAACAGTGATCAGGAAATCTTTCTCTTCTCTCTCATTTTCCAGAAGCAAAGCTTTAGGCTTTTAGACTCCTTCAACATGCAGCATTATGGCACACAATGGAATGAGGATTATGTTTCAGACGAGCACCGCGCAAATTTGGTCCTTGAGTGTGTCAATCACCCTCGCAATAAGGTGGAAAATGTAAGAGAAATGGTGGCAGATTGTTTGTCGCAACGAGGGGGGGATGCGGTGGATGGAAACAAGCATGAATTTTGTAATCTGTGTTCAAGTTGCACATCTGACCTGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0002791 GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0008047 GO:0008150 GO:0012505 GO:0016020 GO:0017016 GO:0017075 GO:0017137 GO:0017157 GO:0019899 GO:0019905 GO:0030141 GO:0030234 GO:0030695 GO:0031267 GO:0031410 GO:0031982 GO:0032879 GO:0032880 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043229 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045921 GO:0048518 GO:0048522 GO:0050708 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051046 GO:0051047 GO:0051049 GO:0051050 GO:0051223 GO:0051336 GO:0051345 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070201 GO:0071944 GO:0090087 GO:0097708 GO:0098772 GO:0099503 GO:1903530 GO:1903532

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lgl_C

Protein Analysis

203

Amino Acids

23.04

Weight (kDa)

6.37

Isoelectric Point (pI)

44.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024959)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0434581 RchiOBHm_Chr5g0042341
rosa_samantha	Rh5DG319200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	450
AciI	CCGC	2 cut(s)	448, 548
AcsI	RAATTY	4 cut(s)	104, 265, 454, 569
AflIII	ACRYGT	1 cut(s)	64
AgsI	TTSAA	4 cut(s)	110, 231, 394, 588
AluBI	AGCT	1 cut(s)	372
AluI	AGCT	1 cut(s)	372
Alw21I	GWGCWC	1 cut(s)	447
Alw26I	GTCTC	1 cut(s)	218
AoxI	GGCC	2 cut(s)	154, 237
ApeKI	GCWGC	2 cut(s)	41, 400
ApoI	RAATTY	4 cut(s)	104, 265, 454, 569
Asp700I	GAANNNNTTC	1 cut(s)	339
AspLEI	GCGC	1 cut(s)	452
AspS9I	GGNCC	3 cut(s)	195, 237, 460
AsuHPI	GGTGA	2 cut(s)	331, 470
AvaII	GGWCC	2 cut(s)	195, 460
BarI	GAAGNNNNNNTAC	2 cut(s)	77, 109
Bbv12I	GWGCWC	1 cut(s)	447
BbvI	GCAGC	2 cut(s)	53, 412
BccI	CCATC	1 cut(s)	548
BclI	TGATCA	1 cut(s)	328
BcoDI	GTCTC	1 cut(s)	218
BfmI	CTRYAG	1 cut(s)	605
BisI	GCNGC	2 cut(s)	42, 401
BlsI	GCNGC	2 cut(s)	43, 402
Bme18I	GGWCC	2 cut(s)	195, 460
BmgT120I	GGNCC	3 cut(s)	195, 237, 460
BmsI	GCATC	2 cut(s)	137, 535
BpuEI	CTTGAG	1 cut(s)	485
BsaXI	ACNNNNNCTCC	2 cut(s)	297, 327
Bse1I	ACTGG	1 cut(s)	181
BseGI	GGATG	3 cut(s)	296, 550, 559
BseNI	ACTGG	1 cut(s)	181
BseXI	GCAGC	2 cut(s)	53, 412
BseYI	CCCAGC	2 cut(s)	73, 123
Bsh1236I	CGCG	1 cut(s)	450
BshFI	GGCC	2 cut(s)	156, 239
BsiHKAI	GWGCWC	1 cut(s)	447
BsmAI	GTCTC	1 cut(s)	218
BsnI	GGCC	2 cut(s)	156, 239
Bsp1286I	GDGCHC	1 cut(s)	447
Bsp143I	GATC	1 cut(s)	328
BspACI	CCGC	2 cut(s)	448, 548
BspANI	GGCC	2 cut(s)	156, 239
BspFNI	CGCG	1 cut(s)	450
BspMAI	CTGCAG	1 cut(s)	609
BspQI	GCTCTTC	1 cut(s)	298
BsrI	ACTGG	1 cut(s)	181
BssMI	GATC	1 cut(s)	328
Bst4CI	ACNGT	1 cut(s)	326
Bst6I	CTCTTC	2 cut(s)	298, 350
BstAPI	GCANNNNNTGC	1 cut(s)	16
BstC8I	GCNNGC	1 cut(s)	277
BstF5I	GGATG	3 cut(s)	296, 550, 559
BstFNI	CGCG	1 cut(s)	450
BstHHI	GCGC	1 cut(s)	452
BstKTI	GATC	1 cut(s)	331
BstMAI	GTCTC	1 cut(s)	218
BstMBI	GATC	1 cut(s)	328
BstMWI	GCNNNNNNNGC	1 cut(s)	16
BstNSI	RCATGY	3 cut(s)	68, 275, 400
BstSFI	CTRYAG	1 cut(s)	605
BstUI	CGCG	1 cut(s)	450
BstV1I	GCAGC	2 cut(s)	53, 412
BsuRI	GGCC	2 cut(s)	156, 239
BtsCI	GGATG	3 cut(s)	296, 550, 559
BtsIMutI	CAGTG	1 cut(s)	331
Cac8I	GCNNGC	1 cut(s)	277
CfoI	GCGC	1 cut(s)	452
Cfr13I	GGNCC	3 cut(s)	195, 237, 460
CviAII	CATG	6 cut(s)	65, 70, 203, 272, 397, 566
CviJI	RGCY	4 cut(s)	156, 239, 372, 379
CviKI_1	RGCY	4 cut(s)	156, 239, 372, 379
DpnI	GATC	1 cut(s)	330
DpnII	GATC	1 cut(s)	328
Eam1104I	CTCTTC	2 cut(s)	298, 350
EarI	CTCTTC	2 cut(s)	298, 350
Eco47I	GGWCC	2 cut(s)	195, 460
EcoO109I	RGGNCCY	2 cut(s)	195, 237
FaeI	CATG	6 cut(s)	68, 73, 206, 275, 400, 569
FalI	AAGNNNNNCTT	4 cut(s)	294, 326, 356, 388
FatI	CATG	6 cut(s)	64, 69, 202, 271, 396, 565
FbaI	TGATCA	1 cut(s)	328
Fnu4HI	GCNGC	2 cut(s)	42, 401
FokI	GGATG	3 cut(s)	283, 557, 566
Fsp4HI	GCNGC	2 cut(s)	42, 401
GlaI	GCGC	1 cut(s)	451
GluI	GCNGC	2 cut(s)	42, 401
GsaI	CCCAGC	2 cut(s)	77, 127
HaeIII	GGCC	2 cut(s)	156, 239
HhaI	GCGC	1 cut(s)	452
Hin1II	CATG	6 cut(s)	68, 73, 206, 275, 400, 569
Hin6I	GCGC	1 cut(s)	450
HinP1I	GCGC	1 cut(s)	450
HindIII	AAGCTT	1 cut(s)	370
HinfI	GANTC	1 cut(s)	386
HphI	GGTGA	2 cut(s)	331, 470
Hpy166II	GTNNAC	1 cut(s)	322
Hpy188I	TCNGA	5 cut(s)	34, 148, 301, 439, 601
Hpy188III	TCNNGA	2 cut(s)	332, 361
Hpy8I	GTNNAC	1 cut(s)	322
HpyAV	CCTTC	5 cut(s)	67, 79, 250, 296, 400
HpyCH4III	ACNGT	1 cut(s)	326
HpyCH4V	TGCA	5 cut(s)	4, 202, 400, 594, 607
HpyF10VI	GCNNNNNNNGC	1 cut(s)	16
Hsp92II	CATG	6 cut(s)	68, 73, 206, 275, 400, 569
HspAI	GCGC	1 cut(s)	450
Ksp22I	TGATCA	1 cut(s)	328
Kzo9I	GATC	1 cut(s)	328
LguI	GCTCTTC	1 cut(s)	298
LpnPI	CCDG	6 cut(s)	59, 109, 162, 261, 317, 374
Lsp1109I	GCAGC	2 cut(s)	53, 412
LweI	GCATC	2 cut(s)	137, 535
MalI	GATC	1 cut(s)	330
MboI	GATC	1 cut(s)	328
MboII	GAAGA	3 cut(s)	112, 285, 337
MhlI	GDGCHC	1 cut(s)	447
MluCI	AATT	6 cut(s)	104, 183, 265, 280, 454, 569
MlyI	GAGTC	1 cut(s)	380
MnlI	CCTC	4 cut(s)	154, 418, 492, 530
MroXI	GAANNNNTTC	1 cut(s)	339
MseI	TTAA	1 cut(s)	81
MvnI	CGCG	1 cut(s)	450
MwoI	GCNNNNNNNGC	1 cut(s)	16
NdeII	GATC	1 cut(s)	328
NlaIII	CATG	6 cut(s)	68, 73, 206, 275, 400, 569
NspI	RCATGY	3 cut(s)	68, 275, 400
PciI	ACATGT	1 cut(s)	64
PciSI	GCTCTTC	1 cut(s)	298
PdmI	GAANNNNTTC	1 cut(s)	339
PkrI	GCNGC	2 cut(s)	43, 402
PleI	GAGTC	1 cut(s)	380
PpsI	GAGTC	1 cut(s)	380
PpuMI	RGGWCCY	1 cut(s)	195
PscI	ACATGT	1 cut(s)	64
Psp5II	RGGWCCY	1 cut(s)	195
PspFI	CCCAGC	2 cut(s)	73, 123
PspPI	GGNCC	3 cut(s)	195, 237, 460
PspPPI	RGGWCCY	1 cut(s)	195
PsrI	GAACNNNNNNTAC	2 cut(s)	568, 600
PstI	CTGCAG	1 cut(s)	609
SapI	GCTCTTC	1 cut(s)	298
SaqAI	TTAA	1 cut(s)	81
SatI	GCNGC	2 cut(s)	42, 401
Sau3AI	GATC	1 cut(s)	328
Sau96I	GGNCC	3 cut(s)	195, 237, 460
SchI	GAGTC	1 cut(s)	380
SduI	GDGCHC	1 cut(s)	447
SetI	ASST	6 cut(s)	90, 146, 197, 374, 495, 606
SfaNI	GCATC	2 cut(s)	137, 535
SfcI	CTRYAG	1 cut(s)	605
SinI	GGWCC	2 cut(s)	195, 460
SmlI	CTYRAG	1 cut(s)	464
SmoI	CTYRAG	1 cut(s)	464
Sse9I	AATT	6 cut(s)	104, 183, 265, 280, 454, 569
SsiI	CCGC	2 cut(s)	448, 548
TaaI	ACNGT	1 cut(s)	326
TaqI	TCGA	2 cut(s)	131, 284
TasI	AATT	6 cut(s)	104, 183, 265, 280, 454, 569
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TscAI	CASTG	1 cut(s)	331
TseI	GCWGC	2 cut(s)	41, 400
TspDTI	ATGAA	2 cut(s)	285, 582
TspRI	CASTG	1 cut(s)	331
VpaK11BI	GGWCC	2 cut(s)	195, 460
XapI	RAATTY	4 cut(s)	104, 265, 454, 569
XceI	RCATGY	3 cut(s)	68, 275, 400
XmnI	GAANNNNTTC	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.