Rh6AG007800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0031300
Physical Location & Seq
Forward (+)
981620 .. 982043
424 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG007800.1

Sequence Viewer

Length: 399 bp
ATGCAGAGTCGGCGGCTATCTGCGTGCAGCGTCGGTGATAAGCTTGACGGGCTTCACAGGACGGGTCTGGTGGTTTACTTAATCGATCTCTTGATCGGTGGTTGGCTGGTTTTGGTTGAAACTGGTTTGCTCAAAGGCGACGGGTCGGGTCAAAGGATCATAGCGTCGAGGAGCAGAGCGGGTTCGTTCGATCTTCCCATCGAGGCTTGGTCGAGGTTCCGAGAGTCTGAGGCACCTGATCGACTTTGGTTTATTGGGATCAGGTTTCCTGATTTCCGGTGGGGTTGTTGCCGGTTCGGAAGGAAGGCAGCGGACCCAGTTGCAGGTGATGAAGTGCTGGAGGGGCTGGCCGTAGGAGAGCTTGGTGGCGACGACGATGGATTGGCAGCAACTATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

14.31

Weight (kDa)

5.13

Isoelectric Point (pI)

41.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031300)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0004343.1_g000003
rosa_samantha Rh6AG007800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 314
Acc36I ACCTGC 1 cut(s) 314
AccB1I GGYRCC 1 cut(s) 232
AccBSI CCGCTC 1 cut(s) 179
AciI CCGC 3 cut(s) 13, 179, 311
AclWI GGATC 2 cut(s) 164, 266
AcoI YGGCCR 1 cut(s) 348
AfiI CCNNNNNNNGG 1 cut(s) 323
AgsI TTSAA 1 cut(s) 119
AluBI AGCT 2 cut(s) 43, 361
AluI AGCT 2 cut(s) 43, 361
AlwI GGATC 2 cut(s) 164, 266
AoxI GGCC 1 cut(s) 348
ApeKI GCWGC 3 cut(s) 27, 308, 386
AspS9I GGNCC 1 cut(s) 313
AsuHPI GGTGA 2 cut(s) 47, 338
AvaII GGWCC 1 cut(s) 313
BanI GGYRCC 1 cut(s) 232
BbvI GCAGC 2 cut(s) 39, 320
BccI CCATC 2 cut(s) 206, 371
BceAI ACGGC 1 cut(s) 335
BfaI CTAG 1 cut(s) 397
BfuAI ACCTGC 1 cut(s) 314
BisI GCNGC 4 cut(s) 14, 28, 309, 387
BlsI GCNGC 4 cut(s) 15, 29, 310, 388
Bme18I GGWCC 1 cut(s) 313
BmgT120I GGNCC 1 cut(s) 313
BmiI GGNNCC 3 cut(s) 218, 234, 315
BmrI ACTGGG 1 cut(s) 311
BmuI ACTGGG 1 cut(s) 311
BpmI CTGGAG 1 cut(s) 359
Bsa29I ATCGAT 1 cut(s) 84
BsaWI WCCGGW 1 cut(s) 276
Bsc4I CCNNNNNNNGG 1 cut(s) 323
Bse118I RCCGGY 1 cut(s) 291
Bse1I ACTGG 2 cut(s) 127, 317
BseCI ATCGAT 1 cut(s) 84
BseLI CCNNNNNNNGG 1 cut(s) 323
BseMII CTCAG 1 cut(s) 219
BseNI ACTGG 2 cut(s) 127, 317
BseRI GAGGAG 1 cut(s) 184
BseXI GCAGC 2 cut(s) 39, 320
BsgI GTGCAG 1 cut(s) 46
BshFI GGCC 1 cut(s) 350
BshNI GGYRCC 1 cut(s) 232
BshVI ATCGAT 1 cut(s) 84
BsiSI CCGG 2 cut(s) 277, 292
BslI CCNNNNNNNGG 1 cut(s) 323
BsnI GGCC 1 cut(s) 350
Bsp143I GATC 6 cut(s) 85, 93, 156, 190, 238, 258
BspACI CCGC 3 cut(s) 13, 179, 311
BspANI GGCC 1 cut(s) 350
BspCNI CTCAG 1 cut(s) 220
BspDI ATCGAT 1 cut(s) 84
BspLI GGNNCC 3 cut(s) 218, 234, 315
BspMI ACCTGC 1 cut(s) 314
BspPI GGATC 2 cut(s) 164, 266
BspT107I GGYRCC 1 cut(s) 232
BsrBI CCGCTC 1 cut(s) 179
BsrFI RCCGGY 1 cut(s) 291
BsrI ACTGG 2 cut(s) 127, 317
BssAI RCCGGY 1 cut(s) 291
BssMI GATC 6 cut(s) 85, 93, 156, 190, 238, 258
BstC8I GCNNGC 2 cut(s) 25, 348
BstDEI CTNAG 1 cut(s) 228
BstKTI GATC 6 cut(s) 88, 96, 159, 193, 241, 261
BstMBI GATC 6 cut(s) 85, 93, 156, 190, 238, 258
BstMWI GCNNNNNNNGC 3 cut(s) 10, 49, 343
BstV1I GCAGC 2 cut(s) 39, 320
Bsu15I ATCGAT 1 cut(s) 84
BsuRI GGCC 1 cut(s) 350
BsuTUI ATCGAT 1 cut(s) 84
BveI ACCTGC 1 cut(s) 314
Cac8I GCNNGC 2 cut(s) 25, 348
Cfr10I RCCGGY 1 cut(s) 291
Cfr13I GGNCC 1 cut(s) 313
ClaI ATCGAT 1 cut(s) 84
CseI GACGC 2 cut(s) 19, 153
CviJI RGCY 8 cut(s) 16, 43, 52, 106, 206, 346, 350, 361
CviKI_1 RGCY 8 cut(s) 16, 43, 52, 106, 206, 346, 350, 361
DdeI CTNAG 1 cut(s) 228
DpnI GATC 6 cut(s) 87, 95, 158, 192, 240, 260
DpnII GATC 6 cut(s) 85, 93, 156, 190, 238, 258
EaeI YGGCCR 1 cut(s) 348
Eco47I GGWCC 1 cut(s) 313
FaiI YATR 1 cut(s) 161
FauI CCCGC 1 cut(s) 172
Fnu4HI GCNGC 4 cut(s) 14, 28, 309, 387
Fsp4HI GCNGC 4 cut(s) 14, 28, 309, 387
FspBI CTAG 1 cut(s) 397
GluI GCNGC 4 cut(s) 14, 28, 309, 387
GsuI CTGGAG 1 cut(s) 359
HaeIII GGCC 1 cut(s) 350
HapII CCGG 2 cut(s) 277, 292
HgaI GACGC 2 cut(s) 19, 153
HindIII AAGCTT 1 cut(s) 41
HinfI GANTC 2 cut(s) 7, 224
HpaII CCGG 2 cut(s) 277, 292
HphI GGTGA 2 cut(s) 47, 338
Hpy166II GTNNAC 1 cut(s) 76
Hpy188I TCNGA 3 cut(s) 221, 229, 299
Hpy188III TCNNGA 2 cut(s) 91, 269
Hpy8I GTNNAC 1 cut(s) 76
Hpy99I CGWCG 5 cut(s) 35, 143, 169, 374, 377
HpyAV CCTTC 2 cut(s) 294, 298
HpyCH4V TGCA 3 cut(s) 4, 27, 323
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 49, 343
HpyF3I CTNAG 1 cut(s) 228
Kzo9I GATC 6 cut(s) 85, 93, 156, 190, 238, 258
LmnI GCTCC 1 cut(s) 171
Lsp1109I GCAGC 2 cut(s) 39, 320
MaeI CTAG 1 cut(s) 397
MalI GATC 6 cut(s) 87, 95, 158, 192, 240, 260
MbiI CCGCTC 1 cut(s) 179
MboI GATC 6 cut(s) 85, 93, 156, 190, 238, 258
MboII GAAGA 1 cut(s) 185
MlyI GAGTC 2 cut(s) 16, 233
MnlI CCTC 5 cut(s) 162, 196, 207, 223, 334
MseI TTAA 1 cut(s) 80
MspA1I CMGCKG 1 cut(s) 311
MspI CCGG 2 cut(s) 277, 292
MwoI GCNNNNNNNGC 3 cut(s) 10, 49, 343
NdeII GATC 6 cut(s) 85, 93, 156, 190, 238, 258
NlaIV GGNNCC 3 cut(s) 218, 234, 315
PaqCI CACCTGC 1 cut(s) 314
PkrI GCNGC 4 cut(s) 15, 29, 310, 388
PleI GAGTC 2 cut(s) 15, 232
PpsI GAGTC 2 cut(s) 15, 232
PspN4I GGNNCC 3 cut(s) 218, 234, 315
PspPI GGNCC 1 cut(s) 313
SaqAI TTAA 1 cut(s) 80
SatI GCNGC 4 cut(s) 14, 28, 309, 387
Sau3AI GATC 6 cut(s) 85, 93, 156, 190, 238, 258
Sau96I GGNCC 1 cut(s) 313
SchI GAGTC 2 cut(s) 16, 233
SetI ASST 6 cut(s) 45, 218, 238, 266, 328, 363
SinI GGWCC 1 cut(s) 313
SsiI CCGC 3 cut(s) 13, 179, 311
SspMI CTAG 1 cut(s) 397
TaqI TCGA 6 cut(s) 84, 167, 189, 201, 212, 241
TauI GCSGC 1 cut(s) 16
Tru1I TTAA 1 cut(s) 80
Tru9I TTAA 1 cut(s) 80
TseI GCWGC 3 cut(s) 27, 308, 386
TspDTI ATGAA 1 cut(s) 345
VpaK11BI GGWCC 1 cut(s) 313
XspI CTAG 1 cut(s) 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.