Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0097651 |
| rosa_samantha | Rh6AG080100 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 23 |
| AccI | GTMKAC | 1 cut(s) | 90 |
| AciI | CCGC | 2 cut(s) | 21, 322 |
| AcoI | YGGCCR | 1 cut(s) | 355 |
| AcyI | GRCGYC | 1 cut(s) | 24 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 60 |
| AgsI | TTSAA | 2 cut(s) | 227, 329 |
| Alw26I | GTCTC | 2 cut(s) | 30, 105 |
| AoxI | GGCC | 1 cut(s) | 355 |
| AspLEI | GCGC | 1 cut(s) | 26 |
| AxyI | CCTNAGG | 1 cut(s) | 55 |
| BalI | TGGCCA | 1 cut(s) | 357 |
| BanI | GGYRCC | 1 cut(s) | 23 |
| BceAI | ACGGC | 1 cut(s) | 397 |
| BcoDI | GTCTC | 2 cut(s) | 30, 105 |
| BfaI | CTAG | 1 cut(s) | 164 |
| BfoI | RGCGCY | 1 cut(s) | 27 |
| BglII | AGATCT | 2 cut(s) | 8, 217 |
| BisI | GCNGC | 2 cut(s) | 22, 323 |
| BlsI | GCNGC | 2 cut(s) | 23, 324 |
| BmiI | GGNNCC | 1 cut(s) | 25 |
| BsaHI | GRCGYC | 1 cut(s) | 24 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 60 |
| Bse21I | CCTNAGG | 1 cut(s) | 55 |
| BseGI | GGATG | 1 cut(s) | 212 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 60 |
| BseMII | CTCAG | 1 cut(s) | 69 |
| BshFI | GGCC | 1 cut(s) | 357 |
| BshNI | GGYRCC | 1 cut(s) | 23 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 60 |
| BsmAI | GTCTC | 2 cut(s) | 30, 105 |
| BsnI | GGCC | 1 cut(s) | 357 |
| Bsp143I | GATC | 3 cut(s) | 8, 217, 286 |
| BspACI | CCGC | 2 cut(s) | 21, 322 |
| BspANI | GGCC | 1 cut(s) | 357 |
| BspCNI | CTCAG | 1 cut(s) | 68 |
| BspLI | GGNNCC | 1 cut(s) | 25 |
| BspT107I | GGYRCC | 1 cut(s) | 23 |
| BssMI | GATC | 3 cut(s) | 8, 217, 286 |
| BssNI | GRCGYC | 1 cut(s) | 24 |
| Bst4CI | ACNGT | 2 cut(s) | 88, 372 |
| BstACI | GRCGYC | 1 cut(s) | 24 |
| BstDEI | CTNAG | 1 cut(s) | 55 |
| BstF5I | GGATG | 1 cut(s) | 212 |
| BstH2I | RGCGCY | 1 cut(s) | 27 |
| BstHHI | GCGC | 1 cut(s) | 26 |
| BstKTI | GATC | 3 cut(s) | 11, 220, 289 |
| BstMAI | GTCTC | 2 cut(s) | 30, 105 |
| BstMBI | GATC | 3 cut(s) | 8, 217, 286 |
| BstX2I | RGATCY | 2 cut(s) | 8, 217 |
| BstYI | RGATCY | 2 cut(s) | 8, 217 |
| Bsu36I | CCTNAGG | 1 cut(s) | 55 |
| BsuRI | GGCC | 1 cut(s) | 357 |
| BtsCI | GGATG | 1 cut(s) | 212 |
| BtsIMutI | CAGTG | 1 cut(s) | 151 |
| CfoI | GCGC | 1 cut(s) | 26 |
| CviAII | CATG | 3 cut(s) | 107, 202, 249 |
| CviJI | RGCY | 3 cut(s) | 325, 357, 384 |
| CviKI_1 | RGCY | 3 cut(s) | 325, 357, 384 |
| DdeI | CTNAG | 1 cut(s) | 55 |
| DinI | GGCGCC | 1 cut(s) | 25 |
| DpnI | GATC | 3 cut(s) | 10, 219, 288 |
| DpnII | GATC | 3 cut(s) | 8, 217, 286 |
| EaeI | YGGCCR | 1 cut(s) | 355 |
| Eco32I | GATATC | 2 cut(s) | 31, 104 |
| Eco81I | CCTNAGG | 1 cut(s) | 55 |
| EcoRV | GATATC | 2 cut(s) | 31, 104 |
| EgeI | GGCGCC | 1 cut(s) | 25 |
| EheI | GGCGCC | 1 cut(s) | 25 |
| FaeI | CATG | 3 cut(s) | 110, 205, 252 |
| FaiI | YATR | 6 cut(s) | 71, 77, 108, 203, 250, 275 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 173, 205 |
| FatI | CATG | 3 cut(s) | 106, 201, 248 |
| FblI | GTMKAC | 1 cut(s) | 90 |
| Fnu4HI | GCNGC | 2 cut(s) | 22, 323 |
| FokI | GGATG | 1 cut(s) | 219 |
| Fsp4HI | GCNGC | 2 cut(s) | 22, 323 |
| FspBI | CTAG | 1 cut(s) | 164 |
| GlaI | GCGC | 1 cut(s) | 25 |
| GluI | GCNGC | 2 cut(s) | 22, 323 |
| HaeII | RGCGCY | 1 cut(s) | 27 |
| HaeIII | GGCC | 1 cut(s) | 357 |
| HhaI | GCGC | 1 cut(s) | 26 |
| Hin1I | GRCGYC | 1 cut(s) | 24 |
| Hin1II | CATG | 3 cut(s) | 110, 205, 252 |
| Hin6I | GCGC | 1 cut(s) | 24 |
| HinP1I | GCGC | 1 cut(s) | 24 |
| Hpy166II | GTNNAC | 1 cut(s) | 91 |
| Hpy188I | TCNGA | 2 cut(s) | 35, 48 |
| Hpy188III | TCNNGA | 2 cut(s) | 57, 338 |
| Hpy8I | GTNNAC | 1 cut(s) | 91 |
| HpyCH4III | ACNGT | 2 cut(s) | 88, 372 |
| HpyCH4V | TGCA | 1 cut(s) | 157 |
| HpyF3I | CTNAG | 1 cut(s) | 55 |
| Hsp92I | GRCGYC | 1 cut(s) | 24 |
| Hsp92II | CATG | 3 cut(s) | 110, 205, 252 |
| HspAI | GCGC | 1 cut(s) | 24 |
| KasI | GGCGCC | 1 cut(s) | 23 |
| Kzo9I | GATC | 3 cut(s) | 8, 217, 286 |
| LpnPI | CCDG | 2 cut(s) | 42, 228 |
| MaeI | CTAG | 1 cut(s) | 164 |
| MaeIII | GTNAC | 2 cut(s) | 82, 209 |
| MalI | GATC | 3 cut(s) | 10, 219, 288 |
| MboI | GATC | 3 cut(s) | 8, 217, 286 |
| MboII | GAAGA | 1 cut(s) | 181 |
| MflI | RGATCY | 2 cut(s) | 8, 217 |
| MlsI | TGGCCA | 1 cut(s) | 357 |
| MluCI | AATT | 1 cut(s) | 260 |
| MluNI | TGGCCA | 1 cut(s) | 357 |
| Mly113I | GGCGCC | 1 cut(s) | 24 |
| MnlI | CCTC | 4 cut(s) | 11, 64, 133, 315 |
| Mox20I | TGGCCA | 1 cut(s) | 357 |
| MscI | TGGCCA | 1 cut(s) | 357 |
| MseI | TTAA | 1 cut(s) | 174 |
| Msp20I | TGGCCA | 1 cut(s) | 357 |
| NarI | GGCGCC | 1 cut(s) | 24 |
| NdeII | GATC | 3 cut(s) | 8, 217, 286 |
| NlaIII | CATG | 3 cut(s) | 110, 205, 252 |
| NlaIV | GGNNCC | 1 cut(s) | 25 |
| NmuCI | GTSAC | 1 cut(s) | 209 |
| PkrI | GCNGC | 2 cut(s) | 23, 324 |
| PluTI | GGCGCC | 1 cut(s) | 27 |
| PspN4I | GGNNCC | 1 cut(s) | 25 |
| PsuI | RGATCY | 2 cut(s) | 8, 217 |
| SaqAI | TTAA | 1 cut(s) | 174 |
| SatI | GCNGC | 2 cut(s) | 22, 323 |
| Sau3AI | GATC | 3 cut(s) | 8, 217, 286 |
| SetI | ASST | 3 cut(s) | 96, 144, 199 |
| SfoI | GGCGCC | 1 cut(s) | 25 |
| Sse9I | AATT | 1 cut(s) | 260 |
| SsiI | CCGC | 2 cut(s) | 21, 322 |
| SspDI | GGCGCC | 1 cut(s) | 23 |
| SspMI | CTAG | 1 cut(s) | 164 |
| TaaI | ACNGT | 2 cut(s) | 88, 372 |
| TaqI | TCGA | 2 cut(s) | 258, 269 |
| TasI | AATT | 1 cut(s) | 260 |
| TauI | GCSGC | 2 cut(s) | 24, 325 |
| Tru1I | TTAA | 1 cut(s) | 174 |
| Tru9I | TTAA | 1 cut(s) | 174 |
| TscAI | CASTG | 1 cut(s) | 151 |
| TseFI | GTSAC | 1 cut(s) | 209 |
| Tsp45I | GTSAC | 1 cut(s) | 209 |
| TspDTI | ATGAA | 1 cut(s) | 175 |
| TspGWI | ACGGA | 1 cut(s) | 76 |
| TspRI | CASTG | 1 cut(s) | 151 |
| XmiI | GTMKAC | 1 cut(s) | 90 |
| XspI | CTAG | 1 cut(s) | 164 |