Rh6AG092300

palmitoyl-(protein) hydrolase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0025086
Physical Location & Seq
Forward (+)
13723334 .. 13726197
2864 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG092300.1

Sequence Viewer

Length: 285 bp
ATGAAGAAACTTCCAGAGTTTAGTGCATATTTTGTCCCAGAGATAGCATCATTAAAACCAAAAATTTTTACGGGTTTTTGGTGGTTTAGGGCTCACGGGTTGTTCTACTATTTGAAAGGTGGGCAGGTCAATTATGGTGAAGAACGCAGCATAGCCTATAGGCATTCCCAAGCCGGCACTACCCTGAATGGGATGAGGATCATCCTATTCACTTTGTGGGCCATTCTGCCGGAGCTCAGGTCGTCTGTGTTCTGCAGCAAATGTTCGGTGATAAGGCTCGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.84

Weight (kDa)

9.8

Isoelectric Point (pI)

39.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0025086)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0257171
rosa_rugosa Rorug05G0574400
rosa_samantha Rh6AG092300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 115
AclWI GGATC 1 cut(s) 206
AcsI RAATTY 1 cut(s) 63
AdeI CACNNNGTG 1 cut(s) 216
AfiI CCNNNNNNNGG 1 cut(s) 189
AgsI TTSAA 1 cut(s) 115
AluBI AGCT 1 cut(s) 235
AluI AGCT 1 cut(s) 235
Alw21I GWGCWC 1 cut(s) 237
AlwI GGATC 1 cut(s) 206
AoxI GGCC 1 cut(s) 219
ApeKI GCWGC 2 cut(s) 147, 255
ApoI RAATTY 1 cut(s) 63
AspS9I GGNCC 1 cut(s) 219
AsuHPI GGTGA 2 cut(s) 149, 280
BanII GRGCYC 2 cut(s) 94, 237
Bbv12I GWGCWC 1 cut(s) 237
BbvI GCAGC 2 cut(s) 159, 267
BfmI CTRYAG 2 cut(s) 157, 253
BfuAI ACCTGC 1 cut(s) 115
BisI GCNGC 2 cut(s) 148, 256
BlsI GCNGC 2 cut(s) 149, 257
BmgT120I GGNCC 1 cut(s) 219
BmsI GCATC 1 cut(s) 56
Bpu10I CCTNAGC 1 cut(s) 236
BsaBI GATNNNNATC 1 cut(s) 197
BsaXI ACNNNNNCTCC 2 cut(s) 224, 254
Bsc4I CCNNNNNNNGG 1 cut(s) 189
Bse118I RCCGGY 1 cut(s) 173
Bse8I GATNNNNATC 1 cut(s) 197
BseGI GGATG 2 cut(s) 198, 201
BseJI GATNNNNATC 1 cut(s) 197
BseLI CCNNNNNNNGG 1 cut(s) 189
BseMII CTCAG 1 cut(s) 250
BseXI GCAGC 2 cut(s) 159, 267
BshFI GGCC 1 cut(s) 221
BsiHKAI GWGCWC 1 cut(s) 237
BsiSI CCGG 2 cut(s) 174, 230
BslFI GGGAC 1 cut(s) 20
BslI CCNNNNNNNGG 1 cut(s) 189
BsmFI GGGAC 1 cut(s) 20
BsmI GAATGC 1 cut(s) 163
BsnI GGCC 1 cut(s) 221
Bsp1286I GDGCHC 2 cut(s) 94, 237
Bsp143I GATC 1 cut(s) 198
BspANI GGCC 1 cut(s) 221
BspCNI CTCAG 1 cut(s) 249
BspMAI CTGCAG 1 cut(s) 257
BspMI ACCTGC 1 cut(s) 115
BspPI GGATC 1 cut(s) 206
BsrFI RCCGGY 1 cut(s) 173
BssAI RCCGGY 1 cut(s) 173
BssMI GATC 1 cut(s) 198
BstC8I GCNNGC 1 cut(s) 175
BstDEI CTNAG 1 cut(s) 236
BstF5I GGATG 2 cut(s) 198, 201
BstKTI GATC 1 cut(s) 201
BstMBI GATC 1 cut(s) 198
BstSFI CTRYAG 2 cut(s) 157, 253
BstV1I GCAGC 2 cut(s) 159, 267
BsuRI GGCC 1 cut(s) 221
BtsCI GGATG 2 cut(s) 198, 201
BveI ACCTGC 1 cut(s) 115
Cac8I GCNNGC 1 cut(s) 175
Cfr10I RCCGGY 1 cut(s) 173
Cfr13I GGNCC 1 cut(s) 219
CviJI RGCY 6 cut(s) 92, 155, 173, 221, 235, 277
CviKI_1 RGCY 6 cut(s) 92, 155, 173, 221, 235, 277
DdeI CTNAG 1 cut(s) 236
DpnI GATC 1 cut(s) 200
DpnII GATC 1 cut(s) 198
DraIII CACNNNGTG 1 cut(s) 216
Ecl136II GAGCTC 1 cut(s) 235
Eco24I GRGCYC 2 cut(s) 94, 237
Eco53kI GAGCTC 1 cut(s) 235
EcoICRI GAGCTC 1 cut(s) 235
EcoT38I GRGCYC 2 cut(s) 94, 237
FaiI YATR 4 cut(s) 28, 135, 152, 159
FaqI GGGAC 1 cut(s) 20
Fnu4HI GCNGC 2 cut(s) 148, 256
FokI GGATG 2 cut(s) 188, 205
FriOI GRGCYC 2 cut(s) 94, 237
Fsp4HI GCNGC 2 cut(s) 148, 256
GluI GCNGC 2 cut(s) 148, 256
HaeIII GGCC 1 cut(s) 221
HapII CCGG 2 cut(s) 174, 230
HpaII CCGG 2 cut(s) 174, 230
HphI GGTGA 2 cut(s) 149, 280
Hpy188I TCNGA 1 cut(s) 281
Hpy188III TCNNGA 1 cut(s) 14
HpyCH4V TGCA 2 cut(s) 26, 255
HpyF3I CTNAG 1 cut(s) 236
KroI GCCGGC 1 cut(s) 173
KroNI GCCGGC 1 cut(s) 175
Kzo9I GATC 1 cut(s) 198
LmnI GCTCC 1 cut(s) 232
LpnPI CCDG 7 cut(s) 27, 51, 110, 187, 197, 223, 243
Lsp1109I GCAGC 2 cut(s) 159, 267
LweI GCATC 1 cut(s) 56
MalI GATC 1 cut(s) 200
MboI GATC 1 cut(s) 198
MboII GAAGA 2 cut(s) 16, 152
MhlI GDGCHC 2 cut(s) 94, 237
MluCI AATT 2 cut(s) 63, 130
MnlI CCTC 1 cut(s) 189
MroNI GCCGGC 1 cut(s) 173
MseI TTAA 1 cut(s) 53
MspI CCGG 2 cut(s) 174, 230
Mva1269I GAATGC 1 cut(s) 163
NaeI GCCGGC 1 cut(s) 175
NdeII GATC 1 cut(s) 198
NgoMIV GCCGGC 1 cut(s) 173
PctI GAATGC 1 cut(s) 163
PdiI GCCGGC 1 cut(s) 175
PkrI GCNGC 2 cut(s) 149, 257
Psp124BI GAGCTC 1 cut(s) 237
PspPI GGNCC 1 cut(s) 219
PstI CTGCAG 1 cut(s) 257
SacI GAGCTC 1 cut(s) 237
SaqAI TTAA 1 cut(s) 53
SatI GCNGC 2 cut(s) 148, 256
Sau3AI GATC 1 cut(s) 198
Sau96I GGNCC 1 cut(s) 219
SduI GDGCHC 2 cut(s) 94, 237
SetI ASST 4 cut(s) 121, 129, 237, 242
SfaNI GCATC 1 cut(s) 56
SfcI CTRYAG 2 cut(s) 157, 253
Sse9I AATT 2 cut(s) 63, 130
SstI GAGCTC 1 cut(s) 237
TasI AATT 2 cut(s) 63, 130
Tru1I TTAA 1 cut(s) 53
Tru9I TTAA 1 cut(s) 53
TseI GCWGC 2 cut(s) 147, 255
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.