Rh6AG202400
ERF Family

PAP2 superfamily C-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0026369
Physical Location & Seq
Forward (+)
36270100 .. 36277457
7358 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG202400.1

Sequence Viewer

Length: 1020 bp
ATGGCCTACTTAATGTTGAAATTTCCGGGTACCAAGCTTCACCTCCTCCCAGTCTCCCTCAGACCAAATAAGACTACTGCTGCTTTCTCTTCTTCCTCCTTCTTCACCATGTGGCGGCTGCCGGCAGCTAGGTCCGGCGGGCTGGGCATCGCCGCCATTTCCTACGTGGCAGTCGACTACCTCCGCCACCTGTCCCCCACGTGGCACCGTCGTCTTATGCCGGCCCTCTGGACCGCACTCGCTCTCGTCTCCGTCAGCCGCGTCCCGTTCTACAAGCACTGGAGCTCCGAGTTCCGGTCCGTCAAAGCCTTCGTTGCTTCCATGCTTTTTATGCTCCTCACTCTTCTCGTTGAAGCCGCCTGCGTTCGATTCGTCACCGCCGTCGTCGGCCTCGAATGGCACATTGATACATCTCCTCTTCCTGACACTGGCCAGTGGTTTCTTTTGGCACAGAATGAGAAACTACCTCATGCAGTAGTCGAAATATTGAGAGCCCGTATTATTGGACTGCATCACTTCCTCATGTTGTTTATGATCCTGGCTTTCTCGGTACTGTTTGACTCTGTGAAAGCTCCTGGCCTTGGACTAGGTGCACGATATATGTTCACCATGGCCATTGGCCGTATTCTTCGTTCCATAACTTTTGTTACAACAATTGTACCATCAGCCAGGCCTTGGTGTGCTACTGTTCGGTTTGGAATTCCTTTATATCCTCATCGTTGGGCTCAGAAATATTATGTCCCTTATGCTTCGGATTCCGATGCTATTCGCCAGTTGATACGAAAGGATATGGCGTTTGCTGATACTGGAAAATTAATTGGCGACTACCGTCCGGACTGGGGTCCCGTGAGTTTCCTGATTGATTTTTTGCGACCCACCGTAACCGATGGATCATGGTATAATTTGCTGAGGACCGCTGGAGGCGGCTGCAATGACCTCGTGTACAGTGGGCATGTTCTAGTTGCTGTATTGACAGCTATGGCTTGGACGGTATATAGTATATACACATATGTGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAP2_C

Protein Analysis

339

Amino Acids

38.16

Weight (kDa)

9.84

Isoelectric Point (pI)

44.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0026369)

Species Orthologous Gene IDs
rosa_samantha Rh6AG202400 Rh6CG207700 Rh6DG197800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 29
AccB1I GGYRCC 2 cut(s) 29, 204
AccB7I CCANNNNNTGG 1 cut(s) 675
AccI GTMKAC 1 cut(s) 174
AccII CGCG 1 cut(s) 261
AccIII TCCGGA 1 cut(s) 832
AclWI GGATC 2 cut(s) 529, 898
AcoI YGGCCR 3 cut(s) 430, 612, 619
AcsI RAATTY 2 cut(s) 20, 699
AcvI CACGTG 1 cut(s) 201
AdeI CACNNNGTG 1 cut(s) 111
AfaI GTAC 4 cut(s) 31, 552, 660, 944
AfiI CCNNNNNNNGG 7 cut(s) 114, 201, 294, 428, 581, 675, 839
AgsI TTSAA 2 cut(s) 19, 353
AjnI CCWGG 3 cut(s) 537, 574, 668
AleI CACNNNNGTG 1 cut(s) 1010
AluBI AGCT 5 cut(s) 37, 128, 285, 572, 977
AluI AGCT 5 cut(s) 37, 128, 285, 572, 977
Alw21I GWGCWC 2 cut(s) 287, 595
Alw26I GTCTC 2 cut(s) 58, 253
Alw44I GTGCAC 1 cut(s) 591
AlwI GGATC 2 cut(s) 529, 898
Aor13HI TCCGGA 1 cut(s) 832
AoxI GGCC 8 cut(s) 3, 222, 388, 430, 577, 612, 619, 671
ApaLI GTGCAC 1 cut(s) 591
ApeKI GCWGC 4 cut(s) 80, 118, 125, 927
ApoI RAATTY 2 cut(s) 20, 699
AseI ATTAAT 1 cut(s) 815
Asp718I GGTACC 1 cut(s) 29
AspS9I GGNCC 6 cut(s) 132, 223, 231, 297, 842, 912
AsuC2I CCSGG 1 cut(s) 27
AsuHPI GGTGA 4 cut(s) 32, 97, 367, 598
AvaII GGWCC 5 cut(s) 132, 231, 297, 842, 912
BaeGI GKGCMC 1 cut(s) 595
BaeI ACNNNNGTAYC 2 cut(s) 642, 675
BalI TGGCCA 2 cut(s) 432, 614
BanI GGYRCC 2 cut(s) 29, 204
BanII GRGCYC 3 cut(s) 287, 496, 727
BauI CACGAG 1 cut(s) 938
BbrPI CACGTG 1 cut(s) 201
Bbv12I GWGCWC 2 cut(s) 287, 595
BbvCI CCTCAGC 1 cut(s) 908
BbvI GCAGC 4 cut(s) 67, 105, 137, 914
BccI CCATC 2 cut(s) 670, 881
BceAI ACGGC 2 cut(s) 365, 606
BcgI CGANNNNNNTGC 2 cut(s) 919, 953
BciT130I CCWGG 3 cut(s) 539, 576, 670
BcnI CCSGG 1 cut(s) 27
BcoDI GTCTC 2 cut(s) 58, 253
BfaI CTAG 3 cut(s) 129, 587, 959
BisI GCNGC 9 cut(s) 81, 116, 119, 126, 153, 259, 357, 925, 928
BlsI GCNGC 9 cut(s) 82, 117, 120, 127, 154, 260, 358, 926, 929
Bme1390I CCNGG 4 cut(s) 27, 539, 576, 670
Bme18I GGWCC 5 cut(s) 132, 231, 297, 842, 912
BmgT120I GGNCC 6 cut(s) 132, 223, 231, 297, 842, 912
BmiI GGNNCC 4 cut(s) 31, 206, 843, 844
BmrFI CCNGG 4 cut(s) 27, 539, 576, 670
BmrI ACTGGG 2 cut(s) 44, 847
BmsI GCATC 3 cut(s) 156, 520, 751
BmuI ACTGGG 2 cut(s) 44, 847
BoxI GACNNNNGTC 2 cut(s) 828, 840
BpmI CTGGAG 2 cut(s) 301, 939
Bpu10I CCTNAGC 1 cut(s) 908
BpuMI CCSGG 1 cut(s) 27
BsaAI YACGTR 2 cut(s) 166, 201
BsaJI CCNNGG 3 cut(s) 580, 609, 674
BsaWI WCCGGW 2 cut(s) 294, 832
BsaXI ACNNNNNCTCC 2 cut(s) 269, 299
Bsc4I CCNNNNNNNGG 7 cut(s) 114, 201, 294, 428, 581, 675, 839
Bse118I RCCGGY 2 cut(s) 121, 220
Bse1I ACTGG 7 cut(s) 50, 284, 433, 433, 772, 811, 842
Bse3DI GCAATG 1 cut(s) 937
BseAI TCCGGA 1 cut(s) 832
BseBI CCWGG 3 cut(s) 539, 576, 670
BseDI CCNNGG 3 cut(s) 580, 609, 674
BseLI CCNNNNNNNGG 7 cut(s) 114, 201, 294, 428, 581, 675, 839
BseMI GCAATG 1 cut(s) 937
BseMII CTCAG 3 cut(s) 73, 740, 899
BseNI ACTGG 7 cut(s) 50, 284, 433, 433, 772, 811, 842
BseRI GAGGAG 3 cut(s) 35, 326, 405
BseSI GKGCMC 1 cut(s) 595
BseXI GCAGC 4 cut(s) 67, 105, 137, 914
BseYI CCCAGC 1 cut(s) 142
Bsh1236I CGCG 1 cut(s) 261
BshFI GGCC 8 cut(s) 5, 224, 390, 432, 579, 614, 621, 673
BshNI GGYRCC 2 cut(s) 29, 204
BsiHKAI GWGCWC 2 cut(s) 287, 595
BsiSI CCGG 6 cut(s) 26, 122, 135, 221, 295, 833
BslFI GGGAC 4 cut(s) 178, 248, 725, 828
BslI CCNNNNNNNGG 7 cut(s) 114, 201, 294, 428, 581, 675, 839
BsmAI GTCTC 2 cut(s) 58, 253
BsmBI CGTCTC 1 cut(s) 253
BsmFI GGGAC 4 cut(s) 178, 248, 725, 828
BsnI GGCC 8 cut(s) 5, 224, 390, 432, 579, 614, 621, 673
Bsp1286I GDGCHC 4 cut(s) 287, 496, 595, 727
Bsp13I TCCGGA 1 cut(s) 832
Bsp1407I TGTACA 1 cut(s) 942
Bsp143I GATC 2 cut(s) 534, 890
Bsp19I CCATGG 1 cut(s) 609
BspANI GGCC 8 cut(s) 5, 224, 390, 432, 579, 614, 621, 673
BspCNI CTCAG 3 cut(s) 72, 739, 900
BspEI TCCGGA 1 cut(s) 832
BspFNI CGCG 1 cut(s) 261
BspLI GGNNCC 4 cut(s) 31, 206, 843, 844
BspPI GGATC 2 cut(s) 529, 898
BspT107I GGYRCC 2 cut(s) 29, 204
BsrDI GCAATG 1 cut(s) 937
BsrFI RCCGGY 2 cut(s) 121, 220
BsrGI TGTACA 1 cut(s) 942
BsrI ACTGG 7 cut(s) 50, 284, 433, 433, 772, 811, 842
BssAI RCCGGY 2 cut(s) 121, 220
BssECI CCNNGG 3 cut(s) 580, 609, 674
BssMI GATC 2 cut(s) 534, 890
BssSI CACGAG 1 cut(s) 938
BssT1I CCWWGG 3 cut(s) 580, 609, 674
Bst2BI CACGAG 1 cut(s) 938
Bst2UI CCWGG 3 cut(s) 539, 576, 670
Bst4CI ACNGT 7 cut(s) 209, 555, 688, 830, 880, 947, 991
Bst6I CTCTTC 3 cut(s) 94, 348, 423
BstAUI TGTACA 1 cut(s) 942
BstBAI YACGTR 2 cut(s) 166, 201
BstC8I GCNNGC 4 cut(s) 123, 140, 222, 361
BstDEI CTNAG 3 cut(s) 59, 726, 908
BstDSI CCRYGG 1 cut(s) 609
BstFNI CGCG 1 cut(s) 261
BstKTI GATC 2 cut(s) 537, 893
BstMAI GTCTC 2 cut(s) 58, 253
BstMBI GATC 2 cut(s) 534, 890
BstMWI GCNNNNNNNGC 3 cut(s) 144, 314, 331
BstNI CCWGG 3 cut(s) 539, 576, 670
BstNSI RCATGY 1 cut(s) 956
BstPAI GACNNNNGTC 2 cut(s) 828, 840
BstSCI CCNGG 4 cut(s) 25, 537, 574, 668
BstSLI GKGCMC 1 cut(s) 595
BstUI CGCG 1 cut(s) 261
BstV1I GCAGC 4 cut(s) 67, 105, 137, 914
BsuRI GGCC 8 cut(s) 5, 224, 390, 432, 579, 614, 621, 673
BtgI CCRYGG 1 cut(s) 609
BtgZI GCGATG 1 cut(s) 133
BtsIMutI CAGTG 4 cut(s) 277, 426, 440, 952
Cac8I GCNNGC 4 cut(s) 123, 140, 222, 361
Cfr10I RCCGGY 2 cut(s) 121, 220
Cfr13I GGNCC 6 cut(s) 132, 223, 231, 297, 842, 912
CpoI CGGWCCG 1 cut(s) 297
CseI GACGC 1 cut(s) 250
Csp6I GTAC 4 cut(s) 30, 551, 659, 943
CspI CGGWCCG 1 cut(s) 297
CviAII CATG 7 cut(s) 109, 322, 470, 523, 610, 894, 953
CviQI GTAC 4 cut(s) 30, 551, 659, 943
DdeI CTNAG 3 cut(s) 59, 726, 908
DpnI GATC 2 cut(s) 536, 892
DpnII GATC 2 cut(s) 534, 890
DraIII CACNNNGTG 1 cut(s) 111
EaeI YGGCCR 3 cut(s) 430, 612, 619
Eam1104I CTCTTC 3 cut(s) 94, 348, 423
EarI CTCTTC 3 cut(s) 94, 348, 423
EciI GGCGGA 1 cut(s) 173
Ecl136II GAGCTC 1 cut(s) 285
Eco130I CCWWGG 3 cut(s) 580, 609, 674
Eco147I AGGCCT 1 cut(s) 673
Eco24I GRGCYC 3 cut(s) 287, 496, 727
Eco47I GGWCC 5 cut(s) 132, 231, 297, 842, 912
Eco53kI GAGCTC 1 cut(s) 285
Eco72I CACGTG 1 cut(s) 201
EcoICRI GAGCTC 1 cut(s) 285
EcoO109I RGGNCCY 1 cut(s) 842
EcoRI GAATTC 1 cut(s) 699
EcoRII CCWGG 3 cut(s) 537, 574, 668
EcoT14I CCWWGG 3 cut(s) 580, 609, 674
EcoT38I GRGCYC 3 cut(s) 287, 496, 727
ErhI CCWWGG 3 cut(s) 580, 609, 674
Esp3I CGTCTC 1 cut(s) 253
FaeI CATG 7 cut(s) 112, 325, 473, 526, 613, 897, 956
FaqI GGGAC 4 cut(s) 178, 248, 725, 828
FatI CATG 7 cut(s) 108, 321, 469, 522, 609, 893, 952
FauI CCCGC 1 cut(s) 131
FauNDI CATATG 1 cut(s) 1009
FblI GTMKAC 1 cut(s) 174
Fnu4HI GCNGC 9 cut(s) 81, 116, 119, 126, 153, 259, 357, 925, 928
FriOI GRGCYC 3 cut(s) 287, 496, 727
Fsp4HI GCNGC 9 cut(s) 81, 116, 119, 126, 153, 259, 357, 925, 928
FspBI CTAG 3 cut(s) 129, 587, 959
GluI GCNGC 9 cut(s) 81, 116, 119, 126, 153, 259, 357, 925, 928
GsaI CCCAGC 1 cut(s) 146
GsuI CTGGAG 2 cut(s) 301, 939
HaeIII GGCC 8 cut(s) 5, 224, 390, 432, 579, 614, 621, 673
HapII CCGG 6 cut(s) 26, 122, 135, 221, 295, 833
HgaI GACGC 1 cut(s) 250
Hin1II CATG 7 cut(s) 112, 325, 473, 526, 613, 897, 956
HincII GTYRAC 1 cut(s) 175
HindII GTYRAC 1 cut(s) 175
HindIII AAGCTT 1 cut(s) 35
HinfI GANTC 3 cut(s) 369, 560, 755
HpaII CCGG 6 cut(s) 26, 122, 135, 221, 295, 833
HphI GGTGA 4 cut(s) 32, 97, 367, 598
Hpy166II GTNNAC 4 cut(s) 175, 593, 606, 943
Hpy188I TCNGA 5 cut(s) 62, 289, 729, 754, 760
Hpy188III TCNNGA 4 cut(s) 229, 422, 833, 856
Hpy8I GTNNAC 4 cut(s) 175, 593, 606, 943
Hpy99I CGWCG 3 cut(s) 213, 386, 389
HpyAV CCTTC 2 cut(s) 109, 319
HpyCH4III ACNGT 7 cut(s) 209, 555, 688, 830, 880, 947, 991
HpyCH4IV ACGT 2 cut(s) 165, 200
HpyCH4V TGCA 4 cut(s) 473, 511, 593, 930
HpyF10VI GCNNNNNNNGC 3 cut(s) 144, 314, 331
HpyF3I CTNAG 3 cut(s) 59, 726, 908
HpySE526I ACGT 2 cut(s) 165, 200
Hsp92II CATG 7 cut(s) 112, 325, 473, 526, 613, 897, 956
KflI GGGWCCC 1 cut(s) 842
Kpn2I TCCGGA 1 cut(s) 832
KpnI GGTACC 1 cut(s) 33
KroI GCCGGC 2 cut(s) 121, 220
KroNI GCCGGC 2 cut(s) 123, 222
Kzo9I GATC 2 cut(s) 534, 890
LmnI GCTCC 4 cut(s) 282, 290, 339, 577
Lsp1109I GCAGC 4 cut(s) 67, 105, 137, 914
LweI GCATC 3 cut(s) 156, 520, 751
MaeI CTAG 3 cut(s) 129, 587, 959
MaeII ACGT 2 cut(s) 165, 200
MaeIII GTNAC 3 cut(s) 373, 646, 880
MalI GATC 2 cut(s) 536, 892
MboI GATC 2 cut(s) 534, 890
MboII GAAGA 6 cut(s) 81, 84, 94, 335, 410, 620
MfeI CAATTG 1 cut(s) 654
MhlI GDGCHC 4 cut(s) 287, 496, 595, 727
MlsI TGGCCA 2 cut(s) 432, 614
MluCI AATT 6 cut(s) 20, 654, 699, 812, 816, 901
MluNI TGGCCA 2 cut(s) 432, 614
MlyI GAGTC 1 cut(s) 554
Mox20I TGGCCA 2 cut(s) 432, 614
MroI TCCGGA 1 cut(s) 832
MroNI GCCGGC 2 cut(s) 121, 220
MscI TGGCCA 2 cut(s) 432, 614
MseI TTAA 3 cut(s) 11, 815, 1018
MslI CAYNNNNRTG 1 cut(s) 1010
Msp20I TGGCCA 2 cut(s) 432, 614
MspA1I CMGCKG 1 cut(s) 917
MspI CCGG 6 cut(s) 26, 122, 135, 221, 295, 833
MspR9I CCNGG 4 cut(s) 27, 539, 576, 670
MunI CAATTG 1 cut(s) 654
MvaI CCWGG 3 cut(s) 539, 576, 670
MvnI CGCG 1 cut(s) 261
MwoI GCNNNNNNNGC 3 cut(s) 144, 314, 331
NaeI GCCGGC 2 cut(s) 123, 222
NciI CCSGG 1 cut(s) 27
NcoI CCATGG 1 cut(s) 609
NdeI CATATG 1 cut(s) 1009
NdeII GATC 2 cut(s) 534, 890
NgoMIV GCCGGC 2 cut(s) 121, 220
NlaIII CATG 7 cut(s) 112, 325, 473, 526, 613, 897, 956
NlaIV GGNNCC 4 cut(s) 31, 206, 843, 844
NmuCI GTSAC 1 cut(s) 373
NspI RCATGY 1 cut(s) 956
OliI CACNNNNGTG 1 cut(s) 1010
PceI AGGCCT 1 cut(s) 673
PcsI WCGNNNNNNNCGW 3 cut(s) 171, 378, 390
PdiI GCCGGC 2 cut(s) 123, 222
PfeI GAWTC 2 cut(s) 369, 755
PflMI CCANNNNNTGG 1 cut(s) 675
PkrI GCNGC 9 cut(s) 82, 117, 120, 127, 154, 260, 358, 926, 929
PleI GAGTC 1 cut(s) 554
PmaCI CACGTG 1 cut(s) 201
PmlI CACGTG 1 cut(s) 201
PpsI GAGTC 1 cut(s) 554
Ppu21I YACGTR 2 cut(s) 166, 201
PpuMI RGGWCCY 1 cut(s) 842
PshAI GACNNNNGTC 2 cut(s) 828, 840
PshBI ATTAAT 1 cut(s) 815
Psp124BI GAGCTC 1 cut(s) 287
Psp5II RGGWCCY 1 cut(s) 842
Psp6I CCWGG 3 cut(s) 537, 574, 668
PspCI CACGTG 1 cut(s) 201
PspFI CCCAGC 1 cut(s) 142
PspGI CCWGG 3 cut(s) 537, 574, 668
PspN4I GGNNCC 4 cut(s) 31, 206, 843, 844
PspPI GGNCC 6 cut(s) 132, 223, 231, 297, 842, 912
PspPPI RGGWCCY 1 cut(s) 842
PsrI GAACNNNNNNTAC 2 cut(s) 616, 648
RsaI GTAC 4 cut(s) 31, 552, 660, 944
RsaNI GTAC 4 cut(s) 30, 551, 659, 943
RseI CAYNNNNRTG 1 cut(s) 1010
Rsr2I CGGWCCG 1 cut(s) 297
RsrII CGGWCCG 1 cut(s) 297
SacI GAGCTC 1 cut(s) 287
SalI GTCGAC 1 cut(s) 173
SaqAI TTAA 3 cut(s) 11, 815, 1018
SatI GCNGC 9 cut(s) 81, 116, 119, 126, 153, 259, 357, 925, 928
Sau3AI GATC 2 cut(s) 534, 890
Sau96I GGNCC 6 cut(s) 132, 223, 231, 297, 842, 912
SchI GAGTC 1 cut(s) 554
ScrFI CCNGG 4 cut(s) 27, 539, 576, 670
SduI GDGCHC 4 cut(s) 287, 496, 595, 727
SfaNI GCATC 3 cut(s) 156, 520, 751
SinI GGWCC 5 cut(s) 132, 231, 297, 842, 912
SmiMI CAYNNNNRTG 1 cut(s) 1010
Sse9I AATT 6 cut(s) 20, 654, 699, 812, 816, 901
SseBI AGGCCT 1 cut(s) 673
SspI AATATT 2 cut(s) 486, 734
SspMI CTAG 3 cut(s) 129, 587, 959
SstI GAGCTC 1 cut(s) 287
StuI AGGCCT 1 cut(s) 673
StyD4I CCNGG 4 cut(s) 25, 537, 574, 668
StyI CCWWGG 3 cut(s) 580, 609, 674
TaaI ACNGT 7 cut(s) 209, 555, 688, 830, 880, 947, 991
TaiI ACGT 2 cut(s) 168, 203
TaqI TCGA 4 cut(s) 174, 367, 393, 480
TasI AATT 6 cut(s) 20, 654, 699, 812, 816, 901
TatI WGTACW 1 cut(s) 942
TauI GCSGC 5 cut(s) 118, 155, 261, 359, 927
TfiI GAWTC 2 cut(s) 369, 755
Tru1I TTAA 3 cut(s) 11, 815, 1018
Tru9I TTAA 3 cut(s) 11, 815, 1018
TscAI CASTG 4 cut(s) 284, 433, 440, 952
TseFI GTSAC 1 cut(s) 373
TseI GCWGC 4 cut(s) 80, 118, 125, 927
Tsp45I GTSAC 1 cut(s) 373
TspGWI ACGGA 2 cut(s) 241, 289
TspRI CASTG 4 cut(s) 284, 433, 440, 952
Van91I CCANNNNNTGG 1 cut(s) 675
VneI GTGCAC 1 cut(s) 591
VpaK11BI GGWCC 5 cut(s) 132, 231, 297, 842, 912
VspI ATTAAT 1 cut(s) 815
XapI RAATTY 2 cut(s) 20, 699
XceI RCATGY 1 cut(s) 956
XcmI CCANNNNNNNNNTGG 1 cut(s) 163
XmiI GTMKAC 1 cut(s) 174
XspI CTAG 3 cut(s) 129, 587, 959
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.