Rh6DG197800
ERF Family

PAP2 superfamily C-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0026369
Physical Location & Seq
Forward (+)
35385043 .. 35391180
6138 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG197800.1

Sequence Viewer

Length: 1020 bp
ATGGCCTACTTAATGTTGAAATTTCCGGGTACCAAGCTTCACCTCCTCCCAGTCTCCCTCAGACCAAATAAGACTACTGCTACTCTCTCTTCCTCCTCCTTCACCATGTGGCGGCTGCCGGCAGCTAGGTCCGGCGGGCTGGGCATCGCCGCCATTTCCTACGTGGCAGTCGACTACCTCCGCCACCTCTCCCCCACGTGGCACCGTCGTCTTATGCCGGCCCTCTGGACCGCCCTCGCTCTCGTCTCCGTCAGCCGCGTCCCGTTCTACAAGCACTGGAGCTCCGAGTTCCGGTCCGTCAAAGCCTTCGTTGCTTCCATGCTTTTTATGCTCCTCACTCTTCTCGTTGAAGCCGCCTGCGTTCGATTCGTCACCGCCGTCGTCGGCCTCGAATGGCACATTGATACATCTCCTCTTCCTGACACTGGCCAGTGGTTTCTTTTGGCACAGAATGAGAAACTACCTCATGCAGTAGTCGAAATATTGAGAGCCCGTATTGTTGGACTGCATCACTTCCTCATGTTGTTTATGATCCTGGCTTTCTCGGTACTGTTTGACTCTGTGAAAGCTCCTGGCCTTGGACTAGGTGCACGGTATATGTTCACCATGGCCATTGGCCGTATTCTTCGTTCTATAACTTTTGTTACAACAATTGTACCATCAGCCAGGCCTTGGTGTGCTACTGTTCGGTTTGGAATTCCTTTATATCCTCATCGTTGGGCTCAGAAATATTATGTCCCTTATGCTTCGGATTCCAATGCTATTCGCCAGGTGATACGAAATGATATGGCGTTTGCTGATACTGGAAAATTAATTGGCGACTACCGTCCGGACTGGGGTCCCATGAGCTTCCTGATTGATTTTTTGCGACCCACCGTAACCGATGGATCATGGTATAATTTGCTGAGGACCGCTGGAGGCGGCTGCAATGACCTCGTGTACAGTGGGCATGTTCTAGTTGCTGTATTGACAGCTATGGCTTGGACGGTATATAGTATATACACATTATATGTGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAP2_C

Protein Analysis

339

Amino Acids

38.11

Weight (kDa)

9.87

Isoelectric Point (pI)

44.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0026369)

Species Orthologous Gene IDs
rosa_samantha Rh6AG202400 Rh6CG207700 Rh6DG197800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 29
AccB1I GGYRCC 2 cut(s) 29, 201
AccB7I CCANNNNNTGG 1 cut(s) 672
AccI GTMKAC 1 cut(s) 171
AccII CGCG 1 cut(s) 258
AccIII TCCGGA 1 cut(s) 829
AclWI GGATC 2 cut(s) 526, 895
AcoI YGGCCR 3 cut(s) 427, 609, 616
AcsI RAATTY 2 cut(s) 20, 696
AcvI CACGTG 1 cut(s) 198
AdeI CACNNNGTG 1 cut(s) 108
AfaI GTAC 4 cut(s) 31, 549, 657, 941
AfiI CCNNNNNNNGG 7 cut(s) 111, 198, 291, 425, 578, 672, 836
AgsI TTSAA 2 cut(s) 19, 350
AjnI CCWGG 4 cut(s) 534, 571, 665, 768
AluBI AGCT 6 cut(s) 37, 125, 282, 569, 849, 974
AluI AGCT 6 cut(s) 37, 125, 282, 569, 849, 974
Alw21I GWGCWC 2 cut(s) 284, 592
Alw26I GTCTC 2 cut(s) 58, 250
Alw44I GTGCAC 1 cut(s) 588
AlwI GGATC 2 cut(s) 526, 895
Aor13HI TCCGGA 1 cut(s) 829
AoxI GGCC 8 cut(s) 3, 219, 385, 427, 574, 609, 616, 668
ApaLI GTGCAC 1 cut(s) 588
ApeKI GCWGC 3 cut(s) 115, 122, 924
ApoI RAATTY 2 cut(s) 20, 696
AseI ATTAAT 1 cut(s) 812
Asp718I GGTACC 1 cut(s) 29
AspS9I GGNCC 6 cut(s) 129, 220, 228, 294, 839, 909
AsuC2I CCSGG 1 cut(s) 27
AsuHPI GGTGA 5 cut(s) 32, 94, 364, 595, 784
AvaII GGWCC 5 cut(s) 129, 228, 294, 839, 909
BaeGI GKGCMC 1 cut(s) 592
BaeI ACNNNNGTAYC 2 cut(s) 639, 672
BalI TGGCCA 2 cut(s) 429, 611
BanI GGYRCC 2 cut(s) 29, 201
BanII GRGCYC 3 cut(s) 284, 493, 724
BauI CACGAG 1 cut(s) 935
BbrPI CACGTG 1 cut(s) 198
Bbv12I GWGCWC 2 cut(s) 284, 592
BbvCI CCTCAGC 1 cut(s) 905
BbvI GCAGC 3 cut(s) 102, 134, 911
BccI CCATC 2 cut(s) 667, 878
BceAI ACGGC 2 cut(s) 362, 603
BcgI CGANNNNNNTGC 2 cut(s) 916, 950
BciT130I CCWGG 4 cut(s) 536, 573, 667, 770
BcnI CCSGG 1 cut(s) 27
BcoDI GTCTC 2 cut(s) 58, 250
BfaI CTAG 3 cut(s) 126, 584, 956
BisI GCNGC 8 cut(s) 113, 116, 123, 150, 256, 354, 922, 925
BlsI GCNGC 8 cut(s) 114, 117, 124, 151, 257, 355, 923, 926
Bme1390I CCNGG 5 cut(s) 27, 536, 573, 667, 770
Bme18I GGWCC 5 cut(s) 129, 228, 294, 839, 909
BmgT120I GGNCC 6 cut(s) 129, 220, 228, 294, 839, 909
BmiI GGNNCC 4 cut(s) 31, 203, 840, 841
BmrFI CCNGG 5 cut(s) 27, 536, 573, 667, 770
BmrI ACTGGG 2 cut(s) 44, 844
BmsI GCATC 2 cut(s) 153, 517
BmuI ACTGGG 2 cut(s) 44, 844
BoxI GACNNNNGTC 2 cut(s) 825, 837
BpmI CTGGAG 2 cut(s) 298, 936
Bpu10I CCTNAGC 1 cut(s) 905
BpuMI CCSGG 1 cut(s) 27
BsaAI YACGTR 2 cut(s) 163, 198
BsaJI CCNNGG 3 cut(s) 577, 606, 671
BsaWI WCCGGW 2 cut(s) 291, 829
BsaXI ACNNNNNCTCC 2 cut(s) 266, 296
Bsc4I CCNNNNNNNGG 7 cut(s) 111, 198, 291, 425, 578, 672, 836
Bse118I RCCGGY 2 cut(s) 118, 217
Bse1I ACTGG 6 cut(s) 50, 281, 430, 430, 808, 839
Bse3DI GCAATG 1 cut(s) 934
BseAI TCCGGA 1 cut(s) 829
BseBI CCWGG 4 cut(s) 536, 573, 667, 770
BseDI CCNNGG 3 cut(s) 577, 606, 671
BseLI CCNNNNNNNGG 7 cut(s) 111, 198, 291, 425, 578, 672, 836
BseMI GCAATG 1 cut(s) 934
BseMII CTCAG 3 cut(s) 73, 737, 896
BseNI ACTGG 6 cut(s) 50, 281, 430, 430, 808, 839
BseRI GAGGAG 4 cut(s) 35, 85, 323, 402
BseSI GKGCMC 1 cut(s) 592
BseXI GCAGC 3 cut(s) 102, 134, 911
BseYI CCCAGC 1 cut(s) 139
Bsh1236I CGCG 1 cut(s) 258
BshFI GGCC 8 cut(s) 5, 221, 387, 429, 576, 611, 618, 670
BshNI GGYRCC 2 cut(s) 29, 201
BsiHKAI GWGCWC 2 cut(s) 284, 592
BsiSI CCGG 6 cut(s) 26, 119, 132, 218, 292, 830
BslFI GGGAC 3 cut(s) 245, 722, 825
BslI CCNNNNNNNGG 7 cut(s) 111, 198, 291, 425, 578, 672, 836
BsmAI GTCTC 2 cut(s) 58, 250
BsmBI CGTCTC 1 cut(s) 250
BsmFI GGGAC 3 cut(s) 245, 722, 825
BsnI GGCC 8 cut(s) 5, 221, 387, 429, 576, 611, 618, 670
Bsp1286I GDGCHC 4 cut(s) 284, 493, 592, 724
Bsp13I TCCGGA 1 cut(s) 829
Bsp1407I TGTACA 1 cut(s) 939
Bsp143I GATC 2 cut(s) 531, 887
Bsp19I CCATGG 1 cut(s) 606
BspANI GGCC 8 cut(s) 5, 221, 387, 429, 576, 611, 618, 670
BspCNI CTCAG 3 cut(s) 72, 736, 897
BspEI TCCGGA 1 cut(s) 829
BspFNI CGCG 1 cut(s) 258
BspLI GGNNCC 4 cut(s) 31, 203, 840, 841
BspPI GGATC 2 cut(s) 526, 895
BspT107I GGYRCC 2 cut(s) 29, 201
BsrDI GCAATG 1 cut(s) 934
BsrFI RCCGGY 2 cut(s) 118, 217
BsrGI TGTACA 1 cut(s) 939
BsrI ACTGG 6 cut(s) 50, 281, 430, 430, 808, 839
BssAI RCCGGY 2 cut(s) 118, 217
BssECI CCNNGG 3 cut(s) 577, 606, 671
BssMI GATC 2 cut(s) 531, 887
BssSI CACGAG 1 cut(s) 935
BssT1I CCWWGG 3 cut(s) 577, 606, 671
Bst2BI CACGAG 1 cut(s) 935
Bst2UI CCWGG 4 cut(s) 536, 573, 667, 770
Bst4CI ACNGT 8 cut(s) 206, 552, 594, 685, 827, 877, 944, 988
Bst6I CTCTTC 3 cut(s) 94, 345, 420
BstAUI TGTACA 1 cut(s) 939
BstBAI YACGTR 2 cut(s) 163, 198
BstC8I GCNNGC 4 cut(s) 120, 137, 219, 358
BstDEI CTNAG 3 cut(s) 59, 723, 905
BstDSI CCRYGG 1 cut(s) 606
BstFNI CGCG 1 cut(s) 258
BstKTI GATC 2 cut(s) 534, 890
BstMAI GTCTC 2 cut(s) 58, 250
BstMBI GATC 2 cut(s) 531, 887
BstMWI GCNNNNNNNGC 3 cut(s) 141, 311, 328
BstNI CCWGG 4 cut(s) 536, 573, 667, 770
BstNSI RCATGY 1 cut(s) 953
BstPAI GACNNNNGTC 2 cut(s) 825, 837
BstSCI CCNGG 5 cut(s) 25, 534, 571, 665, 768
BstSLI GKGCMC 1 cut(s) 592
BstUI CGCG 1 cut(s) 258
BstV1I GCAGC 3 cut(s) 102, 134, 911
BsuRI GGCC 8 cut(s) 5, 221, 387, 429, 576, 611, 618, 670
BtgI CCRYGG 1 cut(s) 606
BtgZI GCGATG 1 cut(s) 130
BtsIMutI CAGTG 4 cut(s) 274, 423, 437, 949
Cac8I GCNNGC 4 cut(s) 120, 137, 219, 358
Cfr10I RCCGGY 2 cut(s) 118, 217
Cfr13I GGNCC 6 cut(s) 129, 220, 228, 294, 839, 909
CpoI CGGWCCG 1 cut(s) 294
CseI GACGC 1 cut(s) 247
Csp6I GTAC 4 cut(s) 30, 548, 656, 940
CspI CGGWCCG 1 cut(s) 294
CviAII CATG 8 cut(s) 106, 319, 467, 520, 607, 844, 891, 950
CviQI GTAC 4 cut(s) 30, 548, 656, 940
DdeI CTNAG 3 cut(s) 59, 723, 905
DpnI GATC 2 cut(s) 533, 889
DpnII GATC 2 cut(s) 531, 887
DraIII CACNNNGTG 1 cut(s) 108
EaeI YGGCCR 3 cut(s) 427, 609, 616
Eam1104I CTCTTC 3 cut(s) 94, 345, 420
EarI CTCTTC 3 cut(s) 94, 345, 420
EciI GGCGGA 1 cut(s) 170
Ecl136II GAGCTC 1 cut(s) 282
Eco130I CCWWGG 3 cut(s) 577, 606, 671
Eco147I AGGCCT 1 cut(s) 670
Eco24I GRGCYC 3 cut(s) 284, 493, 724
Eco47I GGWCC 5 cut(s) 129, 228, 294, 839, 909
Eco53kI GAGCTC 1 cut(s) 282
Eco72I CACGTG 1 cut(s) 198
EcoICRI GAGCTC 1 cut(s) 282
EcoO109I RGGNCCY 1 cut(s) 839
EcoRI GAATTC 1 cut(s) 696
EcoRII CCWGG 4 cut(s) 534, 571, 665, 768
EcoT14I CCWWGG 3 cut(s) 577, 606, 671
EcoT38I GRGCYC 3 cut(s) 284, 493, 724
ErhI CCWWGG 3 cut(s) 577, 606, 671
Esp3I CGTCTC 1 cut(s) 250
FaeI CATG 8 cut(s) 109, 322, 470, 523, 610, 847, 894, 953
FaqI GGGAC 3 cut(s) 245, 722, 825
FatI CATG 8 cut(s) 105, 318, 466, 519, 606, 843, 890, 949
FauI CCCGC 1 cut(s) 128
FblI GTMKAC 1 cut(s) 171
Fnu4HI GCNGC 8 cut(s) 113, 116, 123, 150, 256, 354, 922, 925
FriOI GRGCYC 3 cut(s) 284, 493, 724
Fsp4HI GCNGC 8 cut(s) 113, 116, 123, 150, 256, 354, 922, 925
FspBI CTAG 3 cut(s) 126, 584, 956
GluI GCNGC 8 cut(s) 113, 116, 123, 150, 256, 354, 922, 925
GsaI CCCAGC 1 cut(s) 143
GsuI CTGGAG 2 cut(s) 298, 936
HaeIII GGCC 8 cut(s) 5, 221, 387, 429, 576, 611, 618, 670
HapII CCGG 6 cut(s) 26, 119, 132, 218, 292, 830
HgaI GACGC 1 cut(s) 247
Hin1II CATG 8 cut(s) 109, 322, 470, 523, 610, 847, 894, 953
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HindIII AAGCTT 1 cut(s) 35
HinfI GANTC 3 cut(s) 366, 557, 752
HpaII CCGG 6 cut(s) 26, 119, 132, 218, 292, 830
HphI GGTGA 5 cut(s) 32, 94, 364, 595, 784
Hpy166II GTNNAC 4 cut(s) 172, 590, 603, 940
Hpy188I TCNGA 4 cut(s) 62, 286, 726, 751
Hpy188III TCNNGA 4 cut(s) 226, 419, 830, 853
Hpy8I GTNNAC 4 cut(s) 172, 590, 603, 940
Hpy99I CGWCG 3 cut(s) 210, 383, 386
HpyAV CCTTC 2 cut(s) 109, 316
HpyCH4III ACNGT 8 cut(s) 206, 552, 594, 685, 827, 877, 944, 988
HpyCH4IV ACGT 2 cut(s) 162, 197
HpyCH4V TGCA 4 cut(s) 470, 508, 590, 927
HpyF10VI GCNNNNNNNGC 3 cut(s) 141, 311, 328
HpyF3I CTNAG 3 cut(s) 59, 723, 905
HpySE526I ACGT 2 cut(s) 162, 197
Hsp92II CATG 8 cut(s) 109, 322, 470, 523, 610, 847, 894, 953
KflI GGGWCCC 1 cut(s) 839
Kpn2I TCCGGA 1 cut(s) 829
KpnI GGTACC 1 cut(s) 33
KroI GCCGGC 2 cut(s) 118, 217
KroNI GCCGGC 2 cut(s) 120, 219
Kzo9I GATC 2 cut(s) 531, 887
LmnI GCTCC 4 cut(s) 279, 287, 336, 574
Lsp1109I GCAGC 3 cut(s) 102, 134, 911
LweI GCATC 2 cut(s) 153, 517
MaeI CTAG 3 cut(s) 126, 584, 956
MaeII ACGT 2 cut(s) 162, 197
MaeIII GTNAC 3 cut(s) 370, 643, 877
MalI GATC 2 cut(s) 533, 889
MboI GATC 2 cut(s) 531, 887
MboII GAAGA 4 cut(s) 81, 332, 407, 617
MfeI CAATTG 1 cut(s) 651
MhlI GDGCHC 4 cut(s) 284, 493, 592, 724
MlsI TGGCCA 2 cut(s) 429, 611
MluCI AATT 6 cut(s) 20, 651, 696, 809, 813, 898
MluNI TGGCCA 2 cut(s) 429, 611
MlyI GAGTC 1 cut(s) 551
MmeI TCCRAC 1 cut(s) 481
Mox20I TGGCCA 2 cut(s) 429, 611
MroI TCCGGA 1 cut(s) 829
MroNI GCCGGC 2 cut(s) 118, 217
MscI TGGCCA 2 cut(s) 429, 611
MseI TTAA 3 cut(s) 11, 812, 1018
Msp20I TGGCCA 2 cut(s) 429, 611
MspA1I CMGCKG 1 cut(s) 914
MspI CCGG 6 cut(s) 26, 119, 132, 218, 292, 830
MspR9I CCNGG 5 cut(s) 27, 536, 573, 667, 770
MunI CAATTG 1 cut(s) 651
MvaI CCWGG 4 cut(s) 536, 573, 667, 770
MvnI CGCG 1 cut(s) 258
MwoI GCNNNNNNNGC 3 cut(s) 141, 311, 328
NaeI GCCGGC 2 cut(s) 120, 219
NciI CCSGG 1 cut(s) 27
NcoI CCATGG 1 cut(s) 606
NdeII GATC 2 cut(s) 531, 887
NgoMIV GCCGGC 2 cut(s) 118, 217
NlaIII CATG 8 cut(s) 109, 322, 470, 523, 610, 847, 894, 953
NlaIV GGNNCC 4 cut(s) 31, 203, 840, 841
NmuCI GTSAC 1 cut(s) 370
NspI RCATGY 1 cut(s) 953
PceI AGGCCT 1 cut(s) 670
PcsI WCGNNNNNNNCGW 3 cut(s) 168, 375, 387
PdiI GCCGGC 2 cut(s) 120, 219
PfeI GAWTC 2 cut(s) 366, 752
PflMI CCANNNNNTGG 1 cut(s) 672
PkrI GCNGC 8 cut(s) 114, 117, 124, 151, 257, 355, 923, 926
PleI GAGTC 1 cut(s) 551
PmaCI CACGTG 1 cut(s) 198
PmlI CACGTG 1 cut(s) 198
PpsI GAGTC 1 cut(s) 551
Ppu21I YACGTR 2 cut(s) 163, 198
PpuMI RGGWCCY 1 cut(s) 839
PshAI GACNNNNGTC 2 cut(s) 825, 837
PshBI ATTAAT 1 cut(s) 812
Psp124BI GAGCTC 1 cut(s) 284
Psp5II RGGWCCY 1 cut(s) 839
Psp6I CCWGG 4 cut(s) 534, 571, 665, 768
PspCI CACGTG 1 cut(s) 198
PspFI CCCAGC 1 cut(s) 139
PspGI CCWGG 4 cut(s) 534, 571, 665, 768
PspN4I GGNNCC 4 cut(s) 31, 203, 840, 841
PspPI GGNCC 6 cut(s) 129, 220, 228, 294, 839, 909
PspPPI RGGWCCY 1 cut(s) 839
PsrI GAACNNNNNNTAC 2 cut(s) 613, 645
RsaI GTAC 4 cut(s) 31, 549, 657, 941
RsaNI GTAC 4 cut(s) 30, 548, 656, 940
Rsr2I CGGWCCG 1 cut(s) 294
RsrII CGGWCCG 1 cut(s) 294
SacI GAGCTC 1 cut(s) 284
SalI GTCGAC 1 cut(s) 170
SaqAI TTAA 3 cut(s) 11, 812, 1018
SatI GCNGC 8 cut(s) 113, 116, 123, 150, 256, 354, 922, 925
Sau3AI GATC 2 cut(s) 531, 887
Sau96I GGNCC 6 cut(s) 129, 220, 228, 294, 839, 909
SchI GAGTC 1 cut(s) 551
ScrFI CCNGG 5 cut(s) 27, 536, 573, 667, 770
SduI GDGCHC 4 cut(s) 284, 493, 592, 724
SfaNI GCATC 2 cut(s) 153, 517
SinI GGWCC 5 cut(s) 129, 228, 294, 839, 909
Sse9I AATT 6 cut(s) 20, 651, 696, 809, 813, 898
SseBI AGGCCT 1 cut(s) 670
SspI AATATT 2 cut(s) 483, 731
SspMI CTAG 3 cut(s) 126, 584, 956
SstI GAGCTC 1 cut(s) 284
StuI AGGCCT 1 cut(s) 670
StyD4I CCNGG 5 cut(s) 25, 534, 571, 665, 768
StyI CCWWGG 3 cut(s) 577, 606, 671
TaaI ACNGT 8 cut(s) 206, 552, 594, 685, 827, 877, 944, 988
TaiI ACGT 2 cut(s) 165, 200
TaqI TCGA 4 cut(s) 171, 364, 390, 477
TasI AATT 6 cut(s) 20, 651, 696, 809, 813, 898
TatI WGTACW 1 cut(s) 939
TauI GCSGC 5 cut(s) 115, 152, 258, 356, 924
TfiI GAWTC 2 cut(s) 366, 752
Tru1I TTAA 3 cut(s) 11, 812, 1018
Tru9I TTAA 3 cut(s) 11, 812, 1018
TscAI CASTG 4 cut(s) 281, 430, 437, 949
TseFI GTSAC 1 cut(s) 370
TseI GCWGC 3 cut(s) 115, 122, 924
Tsp45I GTSAC 1 cut(s) 370
TspGWI ACGGA 2 cut(s) 238, 286
TspRI CASTG 4 cut(s) 281, 430, 437, 949
Van91I CCANNNNNTGG 1 cut(s) 672
VneI GTGCAC 1 cut(s) 588
VpaK11BI GGWCC 5 cut(s) 129, 228, 294, 839, 909
VspI ATTAAT 1 cut(s) 812
XapI RAATTY 2 cut(s) 20, 696
XceI RCATGY 1 cut(s) 953
XcmI CCANNNNNNNNNTGG 1 cut(s) 160
XmiI GTMKAC 1 cut(s) 171
XspI CTAG 3 cut(s) 126, 584, 956
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.