Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0025538

Physical Location & Seq

Genomic Coordinates Reverse (-)

41573389 .. 41582354

Gene Structure 8966 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG231700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGGGGCACCCAAGTGCCTTTCGACACCTGAAACAAAACAAACTTCCATATGAATACTTGACCCCACTACAAGCTGCTGTTGGAGTGGTCCAAAAGGGCTTACGGCCAACCATTCCAAAGCAAACTCATCCAAAACTTACTGAGTTACTTGAGAAATGCTGGCAACAAGATCCAACATTAAGACCCGACTTCTCAGAAATCATAGAGATCGATGCTGCAACCATTAGCCAAGGAGGTGTTGTACTCCTTTTCACTTGGTATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko01521 ko01522 ko04010 ko04012 ko04013 ko04015 ko04024 ko04062 ko04068 ko04150 ko04214 ko04270 ko04320 ko04510 ko04650 ko04720 ko04722 ko04726 ko04730 ko04810 ko04910 ko04914 ko04934 ko05034 ko05160 ko05200 ko05205 ko05210 ko05211 ko05212 ko05213 ko05214 ko05215 ko05216 ko05218 ko05219 ko05220 ko05221 ko05223 ko05224 ko05225 ko05226 map01521 map01522 map04010 map04012 map04013 map04015 map04024 map04062 map04068 map04150 map04214 map04270 map04320 map04510 map04650 map04720 map04722 map04726 map04730 map04810 map04910 map04914 map04934 map05034 map05160 map05200 map05205 map05210 map05211 map05212 map05213 map05214 map05215 map05216 map05218 map05219 map05220 map05221 map05223 map05224 map05225 map05226

Pfam Domains

Protein Families

ACT Pkinase_Tyr

Protein Analysis

88

Amino Acids

10.01

Weight (kDa)

6.82

Isoelectric Point (pI)

53.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	14 - 69	5e-08	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025538)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002559.1_g000001
rosa_samantha	Rh6AG231700 Rh6BG236600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	6
AclWI	GGATC	1 cut(s)	164
AcoI	YGGCCR	1 cut(s)	104
AfaI	GTAC	1 cut(s)	243
AleI	CACNNNNGTG	1 cut(s)	12
AluBI	AGCT	1 cut(s)	74
AluI	AGCT	1 cut(s)	74
AlwI	GGATC	1 cut(s)	164
AoxI	GGCC	1 cut(s)	104
ApeKI	GCWGC	2 cut(s)	74, 215
AspS9I	GGNCC	1 cut(s)	88
AvaII	GGWCC	1 cut(s)	88
BaeGI	GKGCMC	1 cut(s)	9
BanI	GGYRCC	1 cut(s)	6
BbvI	GCAGC	2 cut(s)	61, 202
BceAI	ACGGC	1 cut(s)	119
BisI	GCNGC	2 cut(s)	75, 216
BlsI	GCNGC	2 cut(s)	76, 217
Bme18I	GGWCC	1 cut(s)	88
BmgT120I	GGNCC	1 cut(s)	88
BmiI	GGNNCC	1 cut(s)	8
BmsI	GCATC	1 cut(s)	202
BpuEI	CTTGAG	1 cut(s)	170
Bsa29I	ATCGAT	1 cut(s)	210
BsaJI	CCNNGG	1 cut(s)	229
BsaXI	ACNNNNNCTCC	2 cut(s)	225, 255
BseCI	ATCGAT	1 cut(s)	210
BseDI	CCNNGG	1 cut(s)	229
BseGI	GGATG	1 cut(s)	127
BseMII	CTCAG	2 cut(s)	132, 207
BseSI	GKGCMC	1 cut(s)	9
BseXI	GCAGC	2 cut(s)	61, 202
BshFI	GGCC	1 cut(s)	106
BshNI	GGYRCC	1 cut(s)	6
BshVI	ATCGAT	1 cut(s)	210
BsnI	GGCC	1 cut(s)	106
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp143I	GATC	2 cut(s)	169, 207
BspANI	GGCC	1 cut(s)	106
BspCNI	CTCAG	2 cut(s)	133, 206
BspDI	ATCGAT	1 cut(s)	210
BspLI	GGNNCC	1 cut(s)	8
BspPI	GGATC	1 cut(s)	164
BspT107I	GGYRCC	1 cut(s)	6
BssECI	CCNNGG	1 cut(s)	229
BssMI	GATC	2 cut(s)	169, 207
BssT1I	CCWWGG	1 cut(s)	229
BstC8I	GCNNGC	1 cut(s)	161
BstDEI	CTNAG	2 cut(s)	141, 193
BstF5I	GGATG	1 cut(s)	127
BstKTI	GATC	2 cut(s)	172, 210
BstMBI	GATC	2 cut(s)	169, 207
BstSLI	GKGCMC	1 cut(s)	9
BstV1I	GCAGC	2 cut(s)	61, 202
BstX2I	RGATCY	1 cut(s)	169
BstYI	RGATCY	1 cut(s)	169
Bsu15I	ATCGAT	1 cut(s)	210
BsuRI	GGCC	1 cut(s)	106
BsuTUI	ATCGAT	1 cut(s)	210
BtsCI	GGATG	1 cut(s)	127
Cac8I	GCNNGC	1 cut(s)	161
Cfr13I	GGNCC	1 cut(s)	88
ClaI	ATCGAT	1 cut(s)	210
Csp6I	GTAC	1 cut(s)	242
CviJI	RGCY	4 cut(s)	74, 99, 106, 228
CviKI_1	RGCY	4 cut(s)	74, 99, 106, 228
CviQI	GTAC	1 cut(s)	242
DdeI	CTNAG	2 cut(s)	141, 193
DpnI	GATC	2 cut(s)	171, 209
DpnII	GATC	2 cut(s)	169, 207
EaeI	YGGCCR	1 cut(s)	104
Eco130I	CCWWGG	1 cut(s)	229
Eco47I	GGWCC	1 cut(s)	88
EcoT14I	CCWWGG	1 cut(s)	229
ErhI	CCWWGG	1 cut(s)	229
FaiI	YATR	4 cut(s)	49, 51, 203, 261
FauNDI	CATATG	1 cut(s)	49
Fnu4HI	GCNGC	2 cut(s)	75, 216
FokI	GGATG	1 cut(s)	114
Fsp4HI	GCNGC	2 cut(s)	75, 216
GluI	GCNGC	2 cut(s)	75, 216
HaeIII	GGCC	1 cut(s)	106
Hpy188I	TCNGA	1 cut(s)	196
HpyCH4V	TGCA	1 cut(s)	218
HpyF3I	CTNAG	2 cut(s)	141, 193
Kzo9I	GATC	2 cut(s)	169, 207
LpnPI	CCDG	2 cut(s)	41, 145
Lsp1109I	GCAGC	2 cut(s)	61, 202
LweI	GCATC	1 cut(s)	202
MaeIII	GTNAC	1 cut(s)	144
MalI	GATC	2 cut(s)	171, 209
MboI	GATC	2 cut(s)	169, 207
MflI	RGATCY	1 cut(s)	169
MhlI	GDGCHC	1 cut(s)	9
MmeI	TCCRAC	2 cut(s)	61, 197
MnlI	CCTC	1 cut(s)	227
MseI	TTAA	1 cut(s)	179
MslI	CAYNNNNRTG	1 cut(s)	12
NdeI	CATATG	1 cut(s)	49
NdeII	GATC	2 cut(s)	169, 207
NlaIV	GGNNCC	1 cut(s)	8
OliI	CACNNNNGTG	1 cut(s)	12
PkrI	GCNGC	2 cut(s)	76, 217
PspN4I	GGNNCC	1 cut(s)	8
PspPI	GGNCC	1 cut(s)	88
PsuI	RGATCY	1 cut(s)	169
RsaI	GTAC	1 cut(s)	243
RsaNI	GTAC	1 cut(s)	242
RseI	CAYNNNNRTG	1 cut(s)	12
SaqAI	TTAA	1 cut(s)	179
SatI	GCNGC	2 cut(s)	75, 216
Sau3AI	GATC	2 cut(s)	169, 207
Sau96I	GGNCC	1 cut(s)	88
SduI	GDGCHC	1 cut(s)	9
SetI	ASST	3 cut(s)	30, 76, 238
SfaNI	GCATC	1 cut(s)	202
SgeI	CNNG	9 cut(s)	24, 40, 70, 83, 161, 172, 179, 197, 242
SinI	GGWCC	1 cut(s)	88
SmiMI	CAYNNNNRTG	1 cut(s)	12
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
StyI	CCWWGG	1 cut(s)	229
TaqI	TCGA	2 cut(s)	22, 210
TatI	WGTACW	1 cut(s)	241
Tru1I	TTAA	1 cut(s)	179
Tru9I	TTAA	1 cut(s)	179
TseI	GCWGC	2 cut(s)	74, 215
TspDTI	ATGAA	1 cut(s)	66
VpaK11BI	GGWCC	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.