Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0025538

Physical Location & Seq

Genomic Coordinates Reverse (-)

44292649 .. 44295138

Gene Structure 2490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG236600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGGGCACCCAAGTGCCTTTCGACACCTGAAACAAAACAAAGTATTAGCCCGTCAGGGTAATATAGAACGCAAGCCATATGATCACAAAGCTGATGTATTTAGCTTTGCAATTGTGTTATGGGAGTTGCTGACCGGAAAGCTTCCATATGAATACTTGACCCCACTACAAGCTGCTGTTGGAGTGGTCCAAAAGGGCTTACGGCCAACCATTCCAAAGCAAACTCATCCAAAACTTACTGAGTTACTCGAGAAATGCTGGCAACAAGATCCAGCATTAAGACCCGACTTCTCAGAAATCATAGAGATGCTGCAGCCATTAGCCAAGGAGATTGGTGATGAAGGAGAAGAACGACGCAAGTCATCTGGAGGATTTCTGTCCGTACTTAGACGAGTTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko01521 ko01522 ko04010 ko04012 ko04013 ko04015 ko04024 ko04062 ko04068 ko04150 ko04214 ko04270 ko04320 ko04510 ko04650 ko04720 ko04722 ko04726 ko04730 ko04810 ko04910 ko04914 ko04934 ko05034 ko05160 ko05200 ko05205 ko05210 ko05211 ko05212 ko05213 ko05214 ko05215 ko05216 ko05218 ko05219 ko05220 ko05221 ko05223 ko05224 ko05225 ko05226 map01521 map01522 map04010 map04012 map04013 map04015 map04024 map04062 map04068 map04150 map04214 map04270 map04320 map04510 map04650 map04720 map04722 map04726 map04730 map04810 map04910 map04914 map04934 map05034 map05160 map05200 map05205 map05210 map05211 map05212 map05213 map05214 map05215 map05216 map05218 map05219 map05220 map05221 map05223 map05224 map05225 map05226

Pfam Domains

Protein Families

ACT Pkinase_Tyr

Protein Analysis

133

Amino Acids

15.19

Weight (kDa)

9.3

Isoelectric Point (pI)

64.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	22 - 104	1.1e-18	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	22 - 102	2.7e-09	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025538)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002559.1_g000001
rosa_samantha	Rh6AG231700 Rh6BG236600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	6
AclWI	GGATC	1 cut(s)	263
AcoI	YGGCCR	1 cut(s)	203
AfaI	GTAC	1 cut(s)	384
AleI	CACNNNNGTG	1 cut(s)	12
AluBI	AGCT	4 cut(s)	92, 105, 142, 173
AluI	AGCT	4 cut(s)	92, 105, 142, 173
AlwI	GGATC	1 cut(s)	263
Ama87I	CYCGRG	1 cut(s)	248
AoxI	GGCC	1 cut(s)	203
ApeKI	GCWGC	3 cut(s)	173, 310, 313
AspS9I	GGNCC	1 cut(s)	187
AsuHPI	GGTGA	1 cut(s)	347
AvaI	CYCGRG	1 cut(s)	248
AvaII	GGWCC	1 cut(s)	187
BaeGI	GKGCMC	1 cut(s)	9
BanI	GGYRCC	1 cut(s)	6
BbvI	GCAGC	3 cut(s)	160, 297, 325
BceAI	ACGGC	1 cut(s)	218
BclI	TGATCA	1 cut(s)	82
BfmI	CTRYAG	1 cut(s)	311
BisI	GCNGC	3 cut(s)	174, 311, 314
BlsI	GCNGC	3 cut(s)	175, 312, 315
Bme18I	GGWCC	1 cut(s)	187
BmeT110I	CYCGRG	1 cut(s)	248
BmgT120I	GGNCC	1 cut(s)	187
BmiI	GGNNCC	1 cut(s)	8
BmsI	GCATC	1 cut(s)	297
BoxI	GACNNNNGTC	1 cut(s)	358
BpmI	CTGGAG	1 cut(s)	387
BsaJI	CCNNGG	1 cut(s)	324
BsaWI	WCCGGW	1 cut(s)	134
BseDI	CCNNGG	1 cut(s)	324
BseGI	GGATG	1 cut(s)	226
BseMII	CTCAG	2 cut(s)	231, 306
BseSI	GKGCMC	1 cut(s)	9
BseXI	GCAGC	3 cut(s)	160, 297, 325
BshFI	GGCC	1 cut(s)	205
BshNI	GGYRCC	1 cut(s)	6
BsiHKCI	CYCGRG	1 cut(s)	248
BsiSI	CCGG	1 cut(s)	135
BsnI	GGCC	1 cut(s)	205
BsoBI	CYCGRG	1 cut(s)	248
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp143I	GATC	2 cut(s)	82, 268
BspANI	GGCC	1 cut(s)	205
BspCNI	CTCAG	2 cut(s)	232, 305
BspLI	GGNNCC	1 cut(s)	8
BspMAI	CTGCAG	1 cut(s)	315
BspPI	GGATC	1 cut(s)	263
BspT107I	GGYRCC	1 cut(s)	6
BssECI	CCNNGG	1 cut(s)	324
BssMI	GATC	2 cut(s)	82, 268
BssT1I	CCWWGG	1 cut(s)	324
BstC8I	GCNNGC	2 cut(s)	74, 260
BstDEI	CTNAG	3 cut(s)	240, 292, 386
BstF5I	GGATG	1 cut(s)	226
BstKTI	GATC	2 cut(s)	85, 271
BstMBI	GATC	2 cut(s)	82, 268
BstPAI	GACNNNNGTC	1 cut(s)	358
BstSFI	CTRYAG	1 cut(s)	311
BstSLI	GKGCMC	1 cut(s)	9
BstV1I	GCAGC	3 cut(s)	160, 297, 325
BstX2I	RGATCY	1 cut(s)	268
BstYI	RGATCY	1 cut(s)	268
BsuRI	GGCC	1 cut(s)	205
BtsCI	GGATG	1 cut(s)	226
Cac8I	GCNNGC	2 cut(s)	74, 260
Cfr13I	GGNCC	1 cut(s)	187
CseI	GACGC	1 cut(s)	363
Csp6I	GTAC	1 cut(s)	383
CviQI	GTAC	1 cut(s)	383
DdeI	CTNAG	3 cut(s)	240, 292, 386
DpnI	GATC	2 cut(s)	84, 270
DpnII	GATC	2 cut(s)	82, 268
EaeI	YGGCCR	1 cut(s)	203
Eco130I	CCWWGG	1 cut(s)	324
Eco47I	GGWCC	1 cut(s)	187
Eco88I	CYCGRG	1 cut(s)	248
EcoT14I	CCWWGG	1 cut(s)	324
ErhI	CCWWGG	1 cut(s)	324
FaiI	YATR	7 cut(s)	65, 79, 81, 121, 148, 150, 302
FauNDI	CATATG	2 cut(s)	79, 148
FbaI	TGATCA	1 cut(s)	82
Fnu4HI	GCNGC	3 cut(s)	174, 311, 314
FokI	GGATG	1 cut(s)	213
Fsp4HI	GCNGC	3 cut(s)	174, 311, 314
GluI	GCNGC	3 cut(s)	174, 311, 314
GsuI	CTGGAG	1 cut(s)	387
HaeIII	GGCC	1 cut(s)	205
HapII	CCGG	1 cut(s)	135
HgaI	GACGC	1 cut(s)	363
HindIII	AAGCTT	1 cut(s)	140
HpaII	CCGG	1 cut(s)	135
HphI	GGTGA	1 cut(s)	347
Hpy188I	TCNGA	1 cut(s)	295
Hpy188III	TCNNGA	2 cut(s)	250, 366
Hpy99I	CGWCG	1 cut(s)	357
HpyAV	CCTTC	1 cut(s)	335
HpyCH4V	TGCA	2 cut(s)	110, 313
HpyF3I	CTNAG	3 cut(s)	240, 292, 386
Ksp22I	TGATCA	1 cut(s)	82
Kzo9I	GATC	2 cut(s)	82, 268
LpnPI	CCDG	6 cut(s)	41, 41, 148, 244, 285, 351
Lsp1109I	GCAGC	3 cut(s)	160, 297, 325
LweI	GCATC	1 cut(s)	297
MaeIII	GTNAC	1 cut(s)	243
MalI	GATC	2 cut(s)	84, 270
MboI	GATC	2 cut(s)	82, 268
MboII	GAAGA	1 cut(s)	359
MfeI	CAATTG	1 cut(s)	111
MflI	RGATCY	1 cut(s)	268
MhlI	GDGCHC	1 cut(s)	9
MluCI	AATT	2 cut(s)	111, 397
MmeI	TCCRAC	1 cut(s)	160
MnlI	CCTC	1 cut(s)	362
MseI	TTAA	2 cut(s)	278, 396
MslI	CAYNNNNRTG	2 cut(s)	12, 305
MspI	CCGG	1 cut(s)	135
MunI	CAATTG	1 cut(s)	111
NdeI	CATATG	2 cut(s)	79, 148
NdeII	GATC	2 cut(s)	82, 268
NlaIV	GGNNCC	1 cut(s)	8
OliI	CACNNNNGTG	1 cut(s)	12
PaeR7I	CTCGAG	1 cut(s)	248
PkrI	GCNGC	3 cut(s)	175, 312, 315
PshAI	GACNNNNGTC	1 cut(s)	358
PspN4I	GGNNCC	1 cut(s)	8
PspPI	GGNCC	1 cut(s)	187
PstI	CTGCAG	1 cut(s)	315
PsuI	RGATCY	1 cut(s)	268
RsaI	GTAC	1 cut(s)	384
RsaNI	GTAC	1 cut(s)	383
RseI	CAYNNNNRTG	2 cut(s)	12, 305
SaqAI	TTAA	2 cut(s)	278, 396
SatI	GCNGC	3 cut(s)	174, 311, 314
Sau3AI	GATC	2 cut(s)	82, 268
Sau96I	GGNCC	1 cut(s)	187
SduI	GDGCHC	1 cut(s)	9
SetI	ASST	5 cut(s)	30, 94, 107, 144, 175
SfaNI	GCATC	1 cut(s)	297
SfcI	CTRYAG	1 cut(s)	311
Sfr274I	CTCGAG	1 cut(s)	248
SinI	GGWCC	1 cut(s)	187
SlaI	CTCGAG	1 cut(s)	248
SmiMI	CAYNNNNRTG	2 cut(s)	12, 305
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
Sse9I	AATT	2 cut(s)	111, 397
StyI	CCWWGG	1 cut(s)	324
TaqI	TCGA	2 cut(s)	22, 249
TasI	AATT	2 cut(s)	111, 397
Tru1I	TTAA	2 cut(s)	278, 396
Tru9I	TTAA	2 cut(s)	278, 396
TseI	GCWGC	3 cut(s)	173, 310, 313
TspDTI	ATGAA	2 cut(s)	165, 354
TspGWI	ACGGA	1 cut(s)	370
VpaK11BI	GGWCC	1 cut(s)	187
XhoI	CTCGAG	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.