Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0033421

Physical Location & Seq

Genomic Coordinates Reverse (-)

58856514 .. 58858963

Gene Structure 2450 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG390000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGAAAGTGATGAGGAGATCAGGAGAGTGCCGGAGATTGGCGGCGAATCAGCCGGAGCATCGGTCTCTGGCAGGGAAGCCGGTTCGGCGGCCGGTCCAGACCGGGTCCAAGTGGCAGGTGACCAACGAAAGAGGGGAAGAAGCCCAGCTGACAAGGAAAGCAAGAGGTTGAAGAGGTTGTTAAGGAACAGAGTCTCTGCTCAGCAAGCGAGGGAAAGGAAGAAGGCATACTTGAGTGACTTGGAAGTTAGAGTGAAAGACTTGGAGCAGAAGAATTCTGAGCTTGATGAGAGGCTCTCTACTTTGCAGAATGAGAATCAGATGCTTAGACATGTATGTGACATCATTCTCCTTACCCTACATATTCATCATCCTTGTCTATCATTATGGTACCATTTTTGTTGGAAAATTTATTCAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009639 GO:0009719 GO:0009725 GO:0009737 GO:0009739 GO:0009740 GO:0009755 GO:0009787 GO:0009889 GO:0009893 GO:0009958 GO:0009966 GO:0009987 GO:0010017 GO:0010033 GO:0010099 GO:0010114 GO:0010218 GO:0010224 GO:0010468 GO:0010476 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0031537 GO:0031539 GO:0032870 GO:0032991 GO:0032993 GO:0033993 GO:0042221 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048518 GO:0048580 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071478 GO:0071482 GO:0071489 GO:0071495 GO:0080090 GO:0080167 GO:0097159 GO:0097305 GO:0104004 GO:0140110 GO:1901363 GO:1901419 GO:1901700 GO:1901701 GO:1903506 GO:1905957 GO:1990837 GO:2000026 GO:2000030 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

Lectin_legB bZIP_1

Protein Analysis

140

Amino Acids

16.06

Weight (kDa)

9.1

Isoelectric Point (pI)

57.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	52 - 110	1.2e-14	bZIP transcription factor
bZIP_2	PF07716	52 - 105	5.5e-09	Basic region leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0033421)

Species	Orthologous Gene IDs
rosa_samantha	Rh6AG390000 Rh6DG391000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	107
Acc36I	ACCTGC	1 cut(s)	107
Acc65I	GGTACC	1 cut(s)	390
AccB1I	GGYRCC	1 cut(s)	390
AciI	CCGC	2 cut(s)	42, 89
AcoI	YGGCCR	1 cut(s)	90
AcsI	RAATTY	2 cut(s)	274, 408
AfaI	GTAC	1 cut(s)	392
AfiI	CCNNNNNNNGG	1 cut(s)	38
AflIII	ACRYGT	1 cut(s)	331
AgsI	TTSAA	2 cut(s)	172, 417
AluBI	AGCT	2 cut(s)	149, 283
AluI	AGCT	2 cut(s)	149, 283
Alw26I	GTCTC	2 cut(s)	70, 199
AoxI	GGCC	1 cut(s)	90
ApoI	RAATTY	2 cut(s)	274, 408
Asp718I	GGTACC	1 cut(s)	390
AspS9I	GGNCC	2 cut(s)	95, 106
AsuC2I	CCSGG	1 cut(s)	104
AsuHPI	GGTGA	1 cut(s)	131
AvaII	GGWCC	2 cut(s)	95, 106
BanI	GGYRCC	1 cut(s)	390
BarI	GAAGNNNNNNTAC	2 cut(s)	212, 244
BcnI	CCSGG	1 cut(s)	104
BcoDI	GTCTC	2 cut(s)	70, 199
BfuAI	ACCTGC	1 cut(s)	107
BglI	GCCNNNNNGGC	1 cut(s)	86
BisI	GCNGC	2 cut(s)	43, 90
BlpI	GCTNAGC	1 cut(s)	201
BlsI	GCNGC	2 cut(s)	44, 91
Bme1390I	CCNGG	1 cut(s)	104
Bme18I	GGWCC	2 cut(s)	95, 106
BmgT120I	GGNCC	2 cut(s)	95, 106
BmiI	GGNNCC	2 cut(s)	107, 392
BmrFI	CCNGG	1 cut(s)	104
BmsI	GCATC	2 cut(s)	68, 312
BplI	GAGNNNNNCTC	2 cut(s)	281, 313
Bpu1102I	GCTNAGC	1 cut(s)	201
BpuEI	CTTGAG	1 cut(s)	253
BpuMI	CCSGG	1 cut(s)	104
BsaI	GGTCTC	1 cut(s)	70
BsaXI	ACNNNNNCTCC	2 cut(s)	48, 78
Bsc4I	CCNNNNNNNGG	1 cut(s)	38
Bse118I	RCCGGY	2 cut(s)	80, 92
BseGI	GGATG	1 cut(s)	370
BseLI	CCNNNNNNNGG	1 cut(s)	38
BseMII	CTCAG	2 cut(s)	215, 270
BseRI	GAGGAG	1 cut(s)	29
BseX3I	CGGCCG	1 cut(s)	90
BseYI	CCCAGC	1 cut(s)	145
Bsh1285I	CGRYCG	1 cut(s)	93
BshFI	GGCC	1 cut(s)	92
BshNI	GGYRCC	1 cut(s)	390
BsiEI	CGRYCG	1 cut(s)	93
BsiSI	CCGG	5 cut(s)	32, 54, 81, 93, 103
BslI	CCNNNNNNNGG	1 cut(s)	38
BsmAI	GTCTC	2 cut(s)	70, 199
BsnI	GGCC	1 cut(s)	92
Bso31I	GGTCTC	1 cut(s)	70
Bsp143I	GATC	1 cut(s)	18
Bsp1720I	GCTNAGC	1 cut(s)	201
BspACI	CCGC	2 cut(s)	42, 89
BspANI	GGCC	1 cut(s)	92
BspCNI	CTCAG	2 cut(s)	214, 271
BspLI	GGNNCC	2 cut(s)	107, 392
BspMI	ACCTGC	1 cut(s)	107
BspT107I	GGYRCC	1 cut(s)	390
BspTNI	GGTCTC	1 cut(s)	70
BsrFI	RCCGGY	2 cut(s)	80, 92
BssAI	RCCGGY	2 cut(s)	80, 92
BssMI	GATC	1 cut(s)	18
Bst6I	CTCTTC	1 cut(s)	167
BstC8I	GCNNGC	1 cut(s)	207
BstDEI	CTNAG	3 cut(s)	201, 279, 326
BstEII	GGTNACC	1 cut(s)	119
BstF5I	GGATG	1 cut(s)	370
BstKTI	GATC	1 cut(s)	21
BstMAI	GTCTC	2 cut(s)	70, 199
BstMBI	GATC	1 cut(s)	18
BstMCI	CGRYCG	1 cut(s)	93
BstMWI	GCNNNNNNNGC	2 cut(s)	86, 206
BstNSI	RCATGY	1 cut(s)	335
BstPI	GGTNACC	1 cut(s)	119
BstSCI	CCNGG	1 cut(s)	102
BstZI	CGGCCG	1 cut(s)	90
BsuRI	GGCC	1 cut(s)	92
BtsCI	GGATG	1 cut(s)	370
BveI	ACCTGC	1 cut(s)	107
Cac8I	GCNNGC	1 cut(s)	207
Cfr10I	RCCGGY	2 cut(s)	80, 92
Cfr13I	GGNCC	2 cut(s)	95, 106
Csp6I	GTAC	1 cut(s)	391
CviAII	CATG	1 cut(s)	332
CviJI	RGCY	7 cut(s)	53, 80, 92, 144, 149, 283, 295
CviKI_1	RGCY	7 cut(s)	53, 80, 92, 144, 149, 283, 295
CviQI	GTAC	1 cut(s)	391
DdeI	CTNAG	3 cut(s)	201, 279, 326
DpnI	GATC	1 cut(s)	20
DpnII	GATC	1 cut(s)	18
EaeI	YGGCCR	1 cut(s)	90
EagI	CGGCCG	1 cut(s)	90
Eam1104I	CTCTTC	1 cut(s)	167
EarI	CTCTTC	1 cut(s)	167
EclXI	CGGCCG	1 cut(s)	90
Eco31I	GGTCTC	1 cut(s)	70
Eco47I	GGWCC	2 cut(s)	95, 106
Eco52I	CGGCCG	1 cut(s)	90
Eco91I	GGTNACC	1 cut(s)	119
EcoO65I	GGTNACC	1 cut(s)	119
EcoRI	GAATTC	1 cut(s)	274
FaeI	CATG	1 cut(s)	335
FaiI	YATR	5 cut(s)	229, 333, 337, 363, 388
FalI	AAGNNNNNCTT	2 cut(s)	215, 247
FatI	CATG	1 cut(s)	331
Fnu4HI	GCNGC	2 cut(s)	43, 90
FokI	GGATG	1 cut(s)	357
Fsp4HI	GCNGC	2 cut(s)	43, 90
GluI	GCNGC	2 cut(s)	43, 90
GsaI	CCCAGC	1 cut(s)	149
HaeIII	GGCC	1 cut(s)	92
HapII	CCGG	5 cut(s)	32, 54, 81, 93, 103
Hin1II	CATG	1 cut(s)	335
HinfI	GANTC	3 cut(s)	47, 192, 316
HpaII	CCGG	5 cut(s)	32, 54, 81, 93, 103
HphI	GGTGA	1 cut(s)	131
Hpy188I	TCNGA	2 cut(s)	280, 321
Hpy188III	TCNNGA	2 cut(s)	22, 98
HpyAV	CCTTC	1 cut(s)	217
HpyCH4V	TGCA	1 cut(s)	307
HpyF10VI	GCNNNNNNNGC	2 cut(s)	86, 206
HpyF3I	CTNAG	3 cut(s)	201, 279, 326
Hsp92II	CATG	1 cut(s)	335
KpnI	GGTACC	1 cut(s)	394
Kzo9I	GATC	1 cut(s)	18
LmnI	GCTCC	2 cut(s)	56, 265
LweI	GCATC	2 cut(s)	68, 312
MaeIII	GTNAC	3 cut(s)	119, 236, 338
MalI	GATC	1 cut(s)	20
MboI	GATC	1 cut(s)	18
MboII	GAAGA	4 cut(s)	150, 184, 232, 283
MluCI	AATT	3 cut(s)	274, 408, 417
MlyI	GAGTC	1 cut(s)	201
MmeI	TCCRAC	1 cut(s)	383
MnlI	CCTC	6 cut(s)	7, 126, 159, 168, 204, 285
MseI	TTAA	1 cut(s)	182
MslI	CAYNNNNRTG	1 cut(s)	336
MspA1I	CMGCKG	1 cut(s)	149
MspI	CCGG	5 cut(s)	32, 54, 81, 93, 103
MspR9I	CCNGG	1 cut(s)	104
MwoI	GCNNNNNNNGC	2 cut(s)	86, 206
NciI	CCSGG	1 cut(s)	104
NdeII	GATC	1 cut(s)	18
NlaIII	CATG	1 cut(s)	335
NlaIV	GGNNCC	2 cut(s)	107, 392
NmuCI	GTSAC	3 cut(s)	119, 236, 338
NspI	RCATGY	1 cut(s)	335
PaqCI	CACCTGC	1 cut(s)	107
PciI	ACATGT	1 cut(s)	331
PfeI	GAWTC	2 cut(s)	47, 316
PflFI	GACNNNGTC	1 cut(s)	104
PkrI	GCNGC	2 cut(s)	44, 91
PleI	GAGTC	1 cut(s)	200
PpsI	GAGTC	1 cut(s)	200
PscI	ACATGT	1 cut(s)	331
PspEI	GGTNACC	1 cut(s)	119
PspFI	CCCAGC	1 cut(s)	145
PspN4I	GGNNCC	2 cut(s)	107, 392
PspPI	GGNCC	2 cut(s)	95, 106
PsyI	GACNNNGTC	1 cut(s)	104
PvuII	CAGCTG	1 cut(s)	149
RsaI	GTAC	1 cut(s)	392
RsaNI	GTAC	1 cut(s)	391
RseI	CAYNNNNRTG	1 cut(s)	336
SaqAI	TTAA	1 cut(s)	182
SatI	GCNGC	2 cut(s)	43, 90
Sau3AI	GATC	1 cut(s)	18
Sau96I	GGNCC	2 cut(s)	95, 106
SchI	GAGTC	1 cut(s)	201
ScrFI	CCNGG	1 cut(s)	104
SetI	ASST	5 cut(s)	121, 151, 170, 179, 285
SfaNI	GCATC	2 cut(s)	68, 312
SinI	GGWCC	2 cut(s)	95, 106
SmiMI	CAYNNNNRTG	1 cut(s)	336
SmlI	CTYRAG	1 cut(s)	232
SmoI	CTYRAG	1 cut(s)	232
Sse9I	AATT	3 cut(s)	274, 408, 417
SsiI	CCGC	2 cut(s)	42, 89
StyD4I	CCNGG	1 cut(s)	102
TaqII	GACCGA	1 cut(s)	52
TasI	AATT	3 cut(s)	274, 408, 417
TauI	GCSGC	2 cut(s)	45, 92
TfiI	GAWTC	2 cut(s)	47, 316
Tru1I	TTAA	1 cut(s)	182
Tru9I	TTAA	1 cut(s)	182
TseFI	GTSAC	3 cut(s)	119, 236, 338
Tsp45I	GTSAC	3 cut(s)	119, 236, 338
TspDTI	ATGAA	1 cut(s)	356
Tth111I	GACNNNGTC	1 cut(s)	104
VpaK11BI	GGWCC	2 cut(s)	95, 106
XapI	RAATTY	2 cut(s)	274, 408
XceI	RCATGY	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.