Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0033421

Physical Location & Seq

Genomic Coordinates Reverse (-)

58305325 .. 58308461

Gene Structure 3137 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG391000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGAAAGTGATGAGGAGATCAGGAGAGTGCCGGAGATTGGCGGCGAGTCAGCCGGAGCATCGGTCTCTGGCAGGGAAGCCGGTTCGGTGGCCGGTCCAGACCGGGTCCAAGTGGCAGGTGAGAACCAAAGAAAGAGGGGAAGAAGCCCAGCTGACAAGGAAAGCAAGAGGTTGAAGAGGTTGTTAAGGAACAGAGTCTCTGCTCAGCAAGCGAGGGAAAGGAAGAAGGCATACTTGAGTGACTTGGAAGTTAGAGTGAAAGACTTGGAGCAGAAGAATTCTGAGCTTGATGAGAGGCTCTCCACTTTGCAGAATGAGAATCAGATGCTCAGACATGTATGTGACATCATTCTCCTTAACCTACATATGAATTCATCATCATTGTCTATCATTATGGTATCATTTATTCAATTTGATATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009639 GO:0009719 GO:0009725 GO:0009737 GO:0009739 GO:0009740 GO:0009755 GO:0009787 GO:0009889 GO:0009893 GO:0009958 GO:0009966 GO:0009987 GO:0010017 GO:0010033 GO:0010099 GO:0010114 GO:0010218 GO:0010224 GO:0010468 GO:0010476 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0031537 GO:0031539 GO:0032870 GO:0032991 GO:0032993 GO:0033993 GO:0042221 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048518 GO:0048580 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071478 GO:0071482 GO:0071489 GO:0071495 GO:0080090 GO:0080167 GO:0097159 GO:0097305 GO:0104004 GO:0140110 GO:1901363 GO:1901419 GO:1901700 GO:1901701 GO:1903506 GO:1905957 GO:1990837 GO:2000026 GO:2000030 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

Lectin_legB bZIP_1

Protein Analysis

140

Amino Acids

15.82

Weight (kDa)

8.85

Isoelectric Point (pI)

51.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	53 - 111	1.2e-14	bZIP transcription factor
bZIP_2	PF07716	53 - 106	5.5e-09	Basic region leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0033421)

Species	Orthologous Gene IDs
rosa_samantha	Rh6AG390000 Rh6DG391000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	107
Acc36I	ACCTGC	1 cut(s)	107
AciI	CCGC	1 cut(s)	42
AcoI	YGGCCR	1 cut(s)	90
AcsI	RAATTY	2 cut(s)	277, 370
AfiI	CCNNNNNNNGG	1 cut(s)	38
AflIII	ACRYGT	1 cut(s)	334
AgsI	TTSAA	2 cut(s)	175, 410
AluBI	AGCT	2 cut(s)	152, 286
AluI	AGCT	2 cut(s)	152, 286
Alw26I	GTCTC	2 cut(s)	70, 202
AoxI	GGCC	1 cut(s)	90
ApoI	RAATTY	2 cut(s)	277, 370
AspS9I	GGNCC	2 cut(s)	95, 106
AsuC2I	CCSGG	1 cut(s)	104
AsuHPI	GGTGA	1 cut(s)	131
AvaII	GGWCC	2 cut(s)	95, 106
BarI	GAAGNNNNNNTAC	2 cut(s)	215, 247
BcnI	CCSGG	1 cut(s)	104
BcoDI	GTCTC	2 cut(s)	70, 202
BfuAI	ACCTGC	1 cut(s)	107
BisI	GCNGC	1 cut(s)	43
BlpI	GCTNAGC	1 cut(s)	204
BlsI	GCNGC	1 cut(s)	44
Bme1390I	CCNGG	1 cut(s)	104
Bme18I	GGWCC	2 cut(s)	95, 106
BmgT120I	GGNCC	2 cut(s)	95, 106
BmiI	GGNNCC	1 cut(s)	107
BmrFI	CCNGG	1 cut(s)	104
BmsI	GCATC	2 cut(s)	68, 315
BplI	GAGNNNNNCTC	2 cut(s)	284, 316
Bpu1102I	GCTNAGC	1 cut(s)	204
BpuEI	CTTGAG	1 cut(s)	256
BpuMI	CCSGG	1 cut(s)	104
BsaI	GGTCTC	1 cut(s)	70
BsaXI	ACNNNNNCTCC	2 cut(s)	48, 78
Bsc4I	CCNNNNNNNGG	1 cut(s)	38
Bse118I	RCCGGY	2 cut(s)	80, 92
BseLI	CCNNNNNNNGG	1 cut(s)	38
BseMII	CTCAG	3 cut(s)	218, 273, 343
BseRI	GAGGAG	1 cut(s)	29
BseYI	CCCAGC	1 cut(s)	148
BshFI	GGCC	1 cut(s)	92
BsiSI	CCGG	5 cut(s)	32, 54, 81, 93, 103
BslI	CCNNNNNNNGG	1 cut(s)	38
BsmAI	GTCTC	2 cut(s)	70, 202
BsnI	GGCC	1 cut(s)	92
Bso31I	GGTCTC	1 cut(s)	70
Bsp143I	GATC	1 cut(s)	18
Bsp1720I	GCTNAGC	1 cut(s)	204
BspACI	CCGC	1 cut(s)	42
BspANI	GGCC	1 cut(s)	92
BspCNI	CTCAG	3 cut(s)	217, 274, 342
BspLI	GGNNCC	1 cut(s)	107
BspMI	ACCTGC	1 cut(s)	107
BspTNI	GGTCTC	1 cut(s)	70
BsrFI	RCCGGY	2 cut(s)	80, 92
BssAI	RCCGGY	2 cut(s)	80, 92
BssMI	GATC	1 cut(s)	18
Bst6I	CTCTTC	1 cut(s)	170
BstC8I	GCNNGC	1 cut(s)	210
BstDEI	CTNAG	3 cut(s)	204, 282, 329
BstKTI	GATC	1 cut(s)	21
BstMAI	GTCTC	2 cut(s)	70, 202
BstMBI	GATC	1 cut(s)	18
BstMWI	GCNNNNNNNGC	1 cut(s)	209
BstNSI	RCATGY	1 cut(s)	338
BstSCI	CCNGG	1 cut(s)	102
BsuRI	GGCC	1 cut(s)	92
BveI	ACCTGC	1 cut(s)	107
Cac8I	GCNNGC	1 cut(s)	210
Cfr10I	RCCGGY	2 cut(s)	80, 92
Cfr13I	GGNCC	2 cut(s)	95, 106
CviAII	CATG	1 cut(s)	335
CviJI	RGCY	7 cut(s)	53, 80, 92, 147, 152, 286, 298
CviKI_1	RGCY	7 cut(s)	53, 80, 92, 147, 152, 286, 298
DdeI	CTNAG	3 cut(s)	204, 282, 329
DpnI	GATC	1 cut(s)	20
DpnII	GATC	1 cut(s)	18
EaeI	YGGCCR	1 cut(s)	90
Eam1104I	CTCTTC	1 cut(s)	170
EarI	CTCTTC	1 cut(s)	170
Eco31I	GGTCTC	1 cut(s)	70
Eco47I	GGWCC	2 cut(s)	95, 106
EcoRI	GAATTC	2 cut(s)	277, 370
FaeI	CATG	1 cut(s)	338
FaiI	YATR	8 cut(s)	232, 336, 340, 366, 368, 395, 419, 421
FalI	AAGNNNNNCTT	2 cut(s)	218, 250
FatI	CATG	1 cut(s)	334
FauNDI	CATATG	1 cut(s)	366
Fnu4HI	GCNGC	1 cut(s)	43
Fsp4HI	GCNGC	1 cut(s)	43
GluI	GCNGC	1 cut(s)	43
GsaI	CCCAGC	1 cut(s)	152
HaeIII	GGCC	1 cut(s)	92
HapII	CCGG	5 cut(s)	32, 54, 81, 93, 103
Hin1II	CATG	1 cut(s)	338
HinfI	GANTC	3 cut(s)	47, 195, 319
HpaII	CCGG	5 cut(s)	32, 54, 81, 93, 103
HphI	GGTGA	1 cut(s)	131
Hpy188I	TCNGA	3 cut(s)	283, 324, 332
Hpy188III	TCNNGA	2 cut(s)	22, 98
HpyAV	CCTTC	1 cut(s)	220
HpyCH4V	TGCA	1 cut(s)	310
HpyF10VI	GCNNNNNNNGC	1 cut(s)	209
HpyF3I	CTNAG	3 cut(s)	204, 282, 329
Hsp92II	CATG	1 cut(s)	338
Kzo9I	GATC	1 cut(s)	18
LmnI	GCTCC	2 cut(s)	56, 268
LweI	GCATC	2 cut(s)	68, 315
MaeIII	GTNAC	2 cut(s)	239, 341
MalI	GATC	1 cut(s)	20
MboI	GATC	1 cut(s)	18
MboII	GAAGA	4 cut(s)	153, 187, 235, 286
MluCI	AATT	3 cut(s)	277, 370, 410
MlyI	GAGTC	2 cut(s)	56, 204
MnlI	CCTC	6 cut(s)	7, 129, 162, 171, 207, 288
MseI	TTAA	2 cut(s)	185, 357
MslI	CAYNNNNRTG	1 cut(s)	339
MspA1I	CMGCKG	1 cut(s)	152
MspI	CCGG	5 cut(s)	32, 54, 81, 93, 103
MspR9I	CCNGG	1 cut(s)	104
MwoI	GCNNNNNNNGC	1 cut(s)	209
NciI	CCSGG	1 cut(s)	104
NdeI	CATATG	1 cut(s)	366
NdeII	GATC	1 cut(s)	18
NlaIII	CATG	1 cut(s)	338
NlaIV	GGNNCC	1 cut(s)	107
NmuCI	GTSAC	2 cut(s)	239, 341
NspI	RCATGY	1 cut(s)	338
PaqCI	CACCTGC	1 cut(s)	107
PciI	ACATGT	1 cut(s)	334
PfeI	GAWTC	1 cut(s)	319
PflFI	GACNNNGTC	1 cut(s)	104
PkrI	GCNGC	1 cut(s)	44
PleI	GAGTC	2 cut(s)	55, 203
PpsI	GAGTC	2 cut(s)	55, 203
PscI	ACATGT	1 cut(s)	334
PspFI	CCCAGC	1 cut(s)	148
PspN4I	GGNNCC	1 cut(s)	107
PspPI	GGNCC	2 cut(s)	95, 106
PsyI	GACNNNGTC	1 cut(s)	104
PvuII	CAGCTG	1 cut(s)	152
RseI	CAYNNNNRTG	1 cut(s)	339
SaqAI	TTAA	2 cut(s)	185, 357
SatI	GCNGC	1 cut(s)	43
Sau3AI	GATC	1 cut(s)	18
Sau96I	GGNCC	2 cut(s)	95, 106
SchI	GAGTC	2 cut(s)	56, 204
ScrFI	CCNGG	1 cut(s)	104
SetI	ASST	6 cut(s)	121, 154, 173, 182, 288, 363
SfaNI	GCATC	2 cut(s)	68, 315
SinI	GGWCC	2 cut(s)	95, 106
SmiMI	CAYNNNNRTG	1 cut(s)	339
SmlI	CTYRAG	1 cut(s)	235
SmoI	CTYRAG	1 cut(s)	235
Sse9I	AATT	3 cut(s)	277, 370, 410
SsiI	CCGC	1 cut(s)	42
StyD4I	CCNGG	1 cut(s)	102
TaqII	GACCGA	1 cut(s)	52
TasI	AATT	3 cut(s)	277, 370, 410
TauI	GCSGC	1 cut(s)	45
TfiI	GAWTC	1 cut(s)	319
Tru1I	TTAA	2 cut(s)	185, 357
Tru9I	TTAA	2 cut(s)	185, 357
TseFI	GTSAC	2 cut(s)	239, 341
Tsp45I	GTSAC	2 cut(s)	239, 341
TspDTI	ATGAA	2 cut(s)	363, 383
Tth111I	GACNNNGTC	1 cut(s)	104
VpaK11BI	GGWCC	2 cut(s)	95, 106
XapI	RAATTY	2 cut(s)	277, 370
XceI	RCATGY	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.