Rh6AG477600

Receptor protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0033660
Physical Location & Seq
Forward (+)
65880185 .. 65888275
8091 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG477600.1

Sequence Viewer

Length: 882 bp
ATGAGAAGCCCGAGCAACTACTCCTCTGGCTTCTACAAGCTCTTCTTTGACAATGACAACCTTCTCCGGCTACTCTTCGACGGTCTTGAGATTTCAAGTGTGTATTGGTTTGAGCCATGGCAAACAAGCCGAACAGCCAGAAGGTCCAAAGACAACAACAGTAGAGTTGCCGTGATGGATTCCTTAGGCAAGTTTACTTCATCAGACAAATATACTTTGATCGCTTCCGATTATGGTGCAGCTTCGCAAAGAAGACTGACGGTTGATTGTGATGGAAATGTTCGGTTGCACAGCCGGGCCAAACCAGGAGACAGATGGGTTGTGACAGGGCAGATCATGGAAAATGCTTGTATGATTCATGGGGTTTGTGGTCCAAATAGTGTGTGTGACTATGAGCCTAGTACTGGAAGAAAATGTTATTGCATTCCTGGTTACAAAATGGCAAACTATACTGATTGGTATTATGGTTGTGAACCTGAGTTCAATTACACTTGCGGCAGAGGTGAGTCCAGTTTCTTCAAGCTTTCGAGGCTCGACTTTTACGAGTATGATTACGGATACTTCCCCAACTACACATTCATGCAGTGTGAGGATCTTTGTTTGCAGCTGTGTAACTGCAAGGGTTTCCAATACTCTCCCCGCAGTAGAATATATGGCTGTTATCTGAAAACGGTGTTGCTCAATGGATACAGGTCTCCTAGCTCTTCTAAAGACATATATTTGAGAGTGCCAAAGATCCATATGTCATCTTATGGATTGCCACAAGAAGAGTATAGGTTGCGTTGCTTAGAGAAGGTGGTTGAGCTAGATAGGAGCTATGAGAAGAGCCATGTGAGATTGGGGAAGAATGGTGTGGTGGATGGTTTGGAATTGGGTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

293

Amino Acids

33.8

Weight (kDa)

8.29

Isoelectric Point (pI)

48.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S_locus_glycop PF00954 78 - 147 2.7e-08 S-locus glycoprotein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0033660)

Species Orthologous Gene IDs
rosa_samantha Rh6AG477600 Rh6AG477900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 495, 640
AclWI GGATC 2 cut(s) 600, 730
AfaI GTAC 1 cut(s) 403
AfiI CCNNNNNNNGG 1 cut(s) 404
AgsI TTSAA 3 cut(s) 96, 484, 520
AjnI CCWGG 2 cut(s) 304, 427
AjuI GAANNNNNNNTTGG 2 cut(s) 560, 592
AluBI AGCT 7 cut(s) 40, 242, 523, 607, 702, 805, 816
AluI AGCT 7 cut(s) 40, 242, 523, 607, 702, 805, 816
Alw26I GTCTC 2 cut(s) 303, 699
AlwI GGATC 2 cut(s) 600, 730
Ama87I CYCGRG 1 cut(s) 10
AoxI GGCC 1 cut(s) 297
ApeKI GCWGC 2 cut(s) 239, 604
AspS9I GGNCC 3 cut(s) 144, 297, 371
AsuC2I CCSGG 1 cut(s) 296
AsuHPI GGTGA 1 cut(s) 515
AvaI CYCGRG 1 cut(s) 10
AvaII GGWCC 2 cut(s) 144, 371
AxyI CCTNAGG 1 cut(s) 184
BbsI GAAGAC 1 cut(s) 259
BbvI GCAGC 2 cut(s) 251, 616
BccI CCATC 4 cut(s) 169, 266, 309, 854
BceAI ACGGC 1 cut(s) 155
BcgI CGANNNNNNTGC 2 cut(s) 218, 252
BciT130I CCWGG 2 cut(s) 306, 429
BciVI GTATCC 2 cut(s) 551, 680
BcnI CCSGG 1 cut(s) 296
BcoDI GTCTC 2 cut(s) 303, 699
BfaI CTAG 3 cut(s) 399, 699, 806
BfuI GTATCC 2 cut(s) 551, 680
BisI GCNGC 3 cut(s) 240, 496, 605
BlsI GCNGC 3 cut(s) 241, 497, 606
BmcAI AGTACT 1 cut(s) 403
Bme1390I CCNGG 3 cut(s) 296, 306, 429
Bme18I GGWCC 2 cut(s) 144, 371
BmeT110I CYCGRG 1 cut(s) 10
BmgT120I GGNCC 3 cut(s) 144, 297, 371
BmrFI CCNGG 3 cut(s) 296, 306, 429
BpiI GAAGAC 1 cut(s) 259
BpuEI CTTGAG 1 cut(s) 107
BpuMI CCSGG 1 cut(s) 296
BsaI GGTCTC 1 cut(s) 699
BsaJI CCNNGG 1 cut(s) 116
Bsc4I CCNNNNNNNGG 1 cut(s) 404
Bse1I ACTGG 2 cut(s) 409, 510
Bse21I CCTNAGG 1 cut(s) 184
BseBI CCWGG 2 cut(s) 306, 429
BseDI CCNNGG 1 cut(s) 116
BseGI GGATG 1 cut(s) 865
BseLI CCNNNNNNNGG 1 cut(s) 404
BseMII CTCAG 1 cut(s) 468
BseNI ACTGG 2 cut(s) 409, 510
BseRI GAGGAG 1 cut(s) 13
BseXI GCAGC 2 cut(s) 251, 616
BsgI GTGCAG 1 cut(s) 258
BshFI GGCC 1 cut(s) 299
BsiHKCI CYCGRG 1 cut(s) 10
BsiSI CCGG 2 cut(s) 67, 295
BslI CCNNNNNNNGG 1 cut(s) 404
BsmAI GTCTC 2 cut(s) 303, 699
BsmI GAATGC 1 cut(s) 423
BsnI GGCC 1 cut(s) 299
Bso31I GGTCTC 1 cut(s) 699
BsoBI CYCGRG 1 cut(s) 10
Bsp143I GATC 4 cut(s) 219, 333, 592, 735
Bsp19I CCATGG 1 cut(s) 116
BspACI CCGC 2 cut(s) 495, 640
BspANI GGCC 1 cut(s) 299
BspCNI CTCAG 1 cut(s) 469
BspPI GGATC 2 cut(s) 600, 730
BspQI GCTCTTC 3 cut(s) 47, 709, 818
BspTNI GGTCTC 1 cut(s) 699
BsrI ACTGG 2 cut(s) 409, 510
BssECI CCNNGG 1 cut(s) 116
BssMI GATC 4 cut(s) 219, 333, 592, 735
BssT1I CCWWGG 1 cut(s) 116
Bst2UI CCWGG 2 cut(s) 306, 429
Bst4CI ACNGT 4 cut(s) 83, 161, 262, 673
Bst6I CTCTTC 5 cut(s) 47, 80, 709, 762, 818
BstDEI CTNAG 4 cut(s) 184, 477, 787, 879
BstDSI CCRYGG 1 cut(s) 116
BstF5I GGATG 1 cut(s) 865
BstKTI GATC 4 cut(s) 222, 336, 595, 738
BstMAI GTCTC 2 cut(s) 303, 699
BstMBI GATC 4 cut(s) 219, 333, 592, 735
BstMWI GCNNNNNNNGC 1 cut(s) 529
BstNI CCWGG 2 cut(s) 306, 429
BstSCI CCNGG 3 cut(s) 294, 304, 427
BstV1I GCAGC 2 cut(s) 251, 616
BstV2I GAAGAC 1 cut(s) 259
BstX2I RGATCY 2 cut(s) 592, 735
BstYI RGATCY 2 cut(s) 592, 735
Bsu36I CCTNAGG 1 cut(s) 184
BsuI GTATCC 2 cut(s) 551, 680
BsuRI GGCC 1 cut(s) 299
BtgI CCRYGG 1 cut(s) 116
BtsCI GGATG 1 cut(s) 865
BtsI GCAGTG 1 cut(s) 590
BtsIMutI CAGTG 1 cut(s) 590
Cfr13I GGNCC 3 cut(s) 144, 297, 371
Csp6I GTAC 1 cut(s) 402
CviAII CATG 5 cut(s) 117, 337, 359, 580, 830
CviQI GTAC 1 cut(s) 402
DdeI CTNAG 4 cut(s) 184, 477, 787, 879
DpnI GATC 4 cut(s) 221, 335, 594, 737
DpnII GATC 4 cut(s) 219, 333, 592, 735
Eam1104I CTCTTC 5 cut(s) 47, 80, 709, 762, 818
EarI CTCTTC 5 cut(s) 47, 80, 709, 762, 818
Eco130I CCWWGG 1 cut(s) 116
Eco31I GGTCTC 1 cut(s) 699
Eco47I GGWCC 2 cut(s) 144, 371
Eco81I CCTNAGG 1 cut(s) 184
Eco88I CYCGRG 1 cut(s) 10
EcoRII CCWGG 2 cut(s) 304, 427
EcoT14I CCWWGG 1 cut(s) 116
ErhI CCWWGG 1 cut(s) 116
FaeI CATG 5 cut(s) 120, 340, 362, 583, 833
FalI AAGNNNNNCTT 2 cut(s) 29, 61
FatI CATG 5 cut(s) 116, 336, 358, 579, 829
FauI CCCGC 1 cut(s) 647
FauNDI CATATG 1 cut(s) 741
Fnu4HI GCNGC 3 cut(s) 240, 496, 605
FokI GGATG 1 cut(s) 872
Fsp4HI GCNGC 3 cut(s) 240, 496, 605
FspBI CTAG 3 cut(s) 399, 699, 806
GluI GCNGC 3 cut(s) 240, 496, 605
HaeIII GGCC 1 cut(s) 299
HapII CCGG 2 cut(s) 67, 295
Hin1II CATG 5 cut(s) 120, 340, 362, 583, 833
HindIII AAGCTT 1 cut(s) 521
HinfI GANTC 3 cut(s) 179, 355, 506
HpaII CCGG 2 cut(s) 67, 295
HphI GGTGA 1 cut(s) 515
Hpy166II GTNNAC 2 cut(s) 195, 473
Hpy188I TCNGA 3 cut(s) 205, 229, 666
Hpy188III TCNNGA 1 cut(s) 86
Hpy8I GTNNAC 2 cut(s) 195, 473
Hpy99I CGWCG 1 cut(s) 83
HpyAV CCTTC 3 cut(s) 71, 135, 787
HpyCH4III ACNGT 4 cut(s) 83, 161, 262, 673
HpyCH4V TGCA 6 cut(s) 239, 289, 423, 583, 604, 618
HpyF10VI GCNNNNNNNGC 1 cut(s) 529
HpyF3I CTNAG 4 cut(s) 184, 477, 787, 879
Hsp92II CATG 5 cut(s) 120, 340, 362, 583, 833
Kzo9I GATC 4 cut(s) 219, 333, 592, 735
LguI GCTCTTC 3 cut(s) 47, 709, 818
LmnI GCTCC 1 cut(s) 813
Lsp1109I GCAGC 2 cut(s) 251, 616
MaeI CTAG 3 cut(s) 399, 699, 806
MaeIII GTNAC 4 cut(s) 322, 386, 431, 611
MalI GATC 4 cut(s) 221, 335, 594, 737
MboI GATC 4 cut(s) 219, 333, 592, 735
MboII GAAGA 9 cut(s) 34, 67, 264, 420, 508, 696, 779, 835, 856
MflI RGATCY 2 cut(s) 592, 735
MluCI AATT 2 cut(s) 484, 869
MlyI GAGTC 1 cut(s) 515
MnlI CCTC 4 cut(s) 34, 494, 522, 583
MslI CAYNNNNRTG 1 cut(s) 578
MspA1I CMGCKG 1 cut(s) 607
MspI CCGG 2 cut(s) 67, 295
MspR9I CCNGG 3 cut(s) 296, 306, 429
Mva1269I GAATGC 1 cut(s) 423
MvaI CCWGG 2 cut(s) 306, 429
MwoI GCNNNNNNNGC 1 cut(s) 529
NciI CCSGG 1 cut(s) 296
NcoI CCATGG 1 cut(s) 116
NdeI CATATG 1 cut(s) 741
NdeII GATC 4 cut(s) 219, 333, 592, 735
NlaIII CATG 5 cut(s) 120, 340, 362, 583, 833
NmuCI GTSAC 2 cut(s) 322, 386
PciSI GCTCTTC 3 cut(s) 47, 709, 818
PcsI WCGNNNNNNNCGW 1 cut(s) 540
PctI GAATGC 1 cut(s) 423
PfeI GAWTC 2 cut(s) 179, 355
PkrI GCNGC 3 cut(s) 241, 497, 606
PleI GAGTC 1 cut(s) 514
PpsI GAGTC 1 cut(s) 514
Psp6I CCWGG 2 cut(s) 304, 427
PspGI CCWGG 2 cut(s) 304, 427
PspPI GGNCC 3 cut(s) 144, 297, 371
PsuI RGATCY 2 cut(s) 592, 735
PvuII CAGCTG 1 cut(s) 607
RsaI GTAC 1 cut(s) 403
RsaNI GTAC 1 cut(s) 402
RseI CAYNNNNRTG 1 cut(s) 578
SapI GCTCTTC 3 cut(s) 47, 709, 818
SatI GCNGC 3 cut(s) 240, 496, 605
Sau3AI GATC 4 cut(s) 219, 333, 592, 735
Sau96I GGNCC 3 cut(s) 144, 297, 371
ScaI AGTACT 1 cut(s) 403
SchI GAGTC 1 cut(s) 515
ScrFI CCNGG 3 cut(s) 296, 306, 429
SinI GGWCC 2 cut(s) 144, 371
SmiMI CAYNNNNRTG 1 cut(s) 578
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
Sse9I AATT 2 cut(s) 484, 869
SsiI CCGC 2 cut(s) 495, 640
SspMI CTAG 3 cut(s) 399, 699, 806
StyD4I CCNGG 3 cut(s) 294, 304, 427
StyI CCWWGG 1 cut(s) 116
TaaI ACNGT 4 cut(s) 83, 161, 262, 673
TaqI TCGA 3 cut(s) 78, 527, 534
TasI AATT 2 cut(s) 484, 869
TatI WGTACW 1 cut(s) 401
TauI GCSGC 1 cut(s) 498
TfiI GAWTC 2 cut(s) 179, 355
TscAI CASTG 1 cut(s) 590
TseFI GTSAC 2 cut(s) 322, 386
TseI GCWGC 2 cut(s) 239, 604
Tsp45I GTSAC 2 cut(s) 322, 386
TspDTI ATGAA 3 cut(s) 189, 347, 568
TspGWI ACGGA 1 cut(s) 570
TspRI CASTG 1 cut(s) 590
VpaK11BI GGWCC 2 cut(s) 144, 371
XcmI CCANNNNNNNNNTGG 1 cut(s) 312
XspI CTAG 3 cut(s) 399, 699, 806
ZrmI AGTACT 1 cut(s) 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.