Rh6AG477900

Receptor protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0033660
Physical Location & Seq
Forward (+)
65920521 .. 65933962
13442 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG477900.1

Sequence Viewer

Length: 909 bp
ATGAGAAGCCCGAGCAACCACTCATCTGGCTTCTACAAGCTCTTCTTTGACAATGACAACCTTCTCCGGCTACTCTTCGACGGTCTTGAGATTTCAAGTTTGTATTGGTTTGAGCCGTGGCTCACAGGCCAAGAAGCAGGAAGGTCCAAAGACAACAACAGTAGAGTTGCCGTGATGGATTCCTTAGGCAAGTTTACTTCATCAGACAAATATACTTTGATCGCTTCTGATTGTGGTGTAGCTTCGCAAAGAAGACTGACTGTTGATTGTGATGGAAATGTTCGGTTGCACAGCCGGACCAAACCCGGAGACAGATGGGTTGTGACAGGGCAGATCATGGAAAATGCTTGTATGATTCATGGGGTTTGTGGTCCTAATAGTGTGTGTGACTATGAGCCTAGTACTGGAAGAAAATGTTCTTGCATTCCTGGTTACAAAATGGCAAACTATACTGATTGGTATTATGGTTGTGAACCTGAGTTCAATTACACTTGCGGCAGAGGTGAGTCCAGTTTCTTCAAGCTTTCGAGGCTCGACTTTTACGGGTATGATTACGGATTCTTCCCCAACTACACATTTATGCAGTGTGAGGATCTCTGTTTGCAGCTGTGTAACTGCAAGGGTTTCCAATACTCTCTCCGCGATAAATACTCTCCAAACTCCAGCAGTGGAATATATGGCTGTTATCCGAAAATGGTGTTGCTCAATGGATACAGGACTCCAAGCTCTTCTAAAGACACATATTTGAGAGTGCCAAAGATCCATATGTCATCTTATGGATTGCCACAAGAAGAGTATAGGTTGCGTTGCATAGATAAGGTAGTTGAGCTAGATAGGAGCTATGAGAAGAGCCATTTTTCCAATGCACTGTACAGGTTTGCTGACTGCGGTGCAGAAGGACTACTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

302

Amino Acids

34.53

Weight (kDa)

6.91

Isoelectric Point (pI)

44.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S_locus_glycop PF00954 81 - 147 2.9e-08 S-locus glycoprotein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0033660)

Species Orthologous Gene IDs
rosa_samantha Rh6AG477600 Rh6AG477900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 642
AciI CCGC 3 cut(s) 495, 640, 888
AclWI GGATC 2 cut(s) 600, 754
AfaI GTAC 2 cut(s) 403, 872
AfiI CCNNNNNNNGG 1 cut(s) 404
AgsI TTSAA 3 cut(s) 96, 484, 520
AjnI CCWGG 1 cut(s) 427
AluBI AGCT 7 cut(s) 40, 242, 523, 607, 726, 829, 840
AluI AGCT 7 cut(s) 40, 242, 523, 607, 726, 829, 840
Alw26I GTCTC 1 cut(s) 303
AlwI GGATC 2 cut(s) 600, 754
Ama87I CYCGRG 1 cut(s) 10
AoxI GGCC 1 cut(s) 127
ApeKI GCWGC 1 cut(s) 604
Asp700I GAANNNNTTC 1 cut(s) 415
AspS9I GGNCC 3 cut(s) 144, 297, 371
AsuC2I CCSGG 1 cut(s) 306
AsuHPI GGTGA 1 cut(s) 515
AvaI CYCGRG 1 cut(s) 10
AvaII GGWCC 3 cut(s) 144, 297, 371
AxyI CCTNAGG 1 cut(s) 184
BbsI GAAGAC 1 cut(s) 259
BbvI GCAGC 1 cut(s) 616
BccI CCATC 3 cut(s) 169, 266, 309
BceAI ACGGC 2 cut(s) 100, 155
BciT130I CCWGG 1 cut(s) 429
BciVI GTATCC 1 cut(s) 704
BcnI CCSGG 1 cut(s) 306
BcoDI GTCTC 1 cut(s) 303
BfaI CTAG 2 cut(s) 399, 830
BfuI GTATCC 1 cut(s) 704
BisI GCNGC 2 cut(s) 496, 605
BlsI GCNGC 2 cut(s) 497, 606
BmcAI AGTACT 1 cut(s) 403
Bme1390I CCNGG 2 cut(s) 306, 429
Bme18I GGWCC 3 cut(s) 144, 297, 371
BmeT110I CYCGRG 1 cut(s) 10
BmgT120I GGNCC 3 cut(s) 144, 297, 371
BmrFI CCNGG 2 cut(s) 306, 429
BpiI GAAGAC 1 cut(s) 259
BpmI CTGGAG 1 cut(s) 646
BpuEI CTTGAG 1 cut(s) 107
BpuMI CCSGG 1 cut(s) 306
BsaJI CCNNGG 1 cut(s) 116
Bsc4I CCNNNNNNNGG 1 cut(s) 404
Bse1I ACTGG 2 cut(s) 409, 510
Bse21I CCTNAGG 1 cut(s) 184
BseBI CCWGG 1 cut(s) 429
BseDI CCNNGG 1 cut(s) 116
BseLI CCNNNNNNNGG 1 cut(s) 404
BseMII CTCAG 1 cut(s) 468
BseNI ACTGG 2 cut(s) 409, 510
BseXI GCAGC 1 cut(s) 616
Bsh1236I CGCG 1 cut(s) 642
BshFI GGCC 1 cut(s) 129
BsiHKCI CYCGRG 1 cut(s) 10
BsiSI CCGG 3 cut(s) 67, 295, 306
BslI CCNNNNNNNGG 1 cut(s) 404
BsmAI GTCTC 1 cut(s) 303
BsmI GAATGC 1 cut(s) 423
BsnI GGCC 1 cut(s) 129
BsoBI CYCGRG 1 cut(s) 10
Bsp1407I TGTACA 1 cut(s) 870
Bsp143I GATC 4 cut(s) 219, 333, 592, 759
BspACI CCGC 3 cut(s) 495, 640, 888
BspANI GGCC 1 cut(s) 129
BspCNI CTCAG 1 cut(s) 469
BspFNI CGCG 1 cut(s) 642
BspPI GGATC 2 cut(s) 600, 754
BspQI GCTCTTC 3 cut(s) 47, 733, 842
BsrGI TGTACA 1 cut(s) 870
BsrI ACTGG 2 cut(s) 409, 510
BssECI CCNNGG 1 cut(s) 116
BssMI GATC 4 cut(s) 219, 333, 592, 759
Bst2UI CCWGG 1 cut(s) 429
Bst4CI ACNGT 4 cut(s) 83, 161, 262, 870
Bst6I CTCTTC 5 cut(s) 47, 80, 733, 786, 842
BstAUI TGTACA 1 cut(s) 870
BstDEI CTNAG 2 cut(s) 184, 477
BstDSI CCRYGG 1 cut(s) 116
BstFNI CGCG 1 cut(s) 642
BstKTI GATC 4 cut(s) 222, 336, 595, 762
BstMAI GTCTC 1 cut(s) 303
BstMBI GATC 4 cut(s) 219, 333, 592, 759
BstMWI GCNNNNNNNGC 1 cut(s) 529
BstNI CCWGG 1 cut(s) 429
BstSCI CCNGG 2 cut(s) 304, 427
BstUI CGCG 1 cut(s) 642
BstV1I GCAGC 1 cut(s) 616
BstV2I GAAGAC 1 cut(s) 259
BstX2I RGATCY 2 cut(s) 592, 759
BstXI CCANNNNNNTGG 1 cut(s) 26
BstYI RGATCY 2 cut(s) 592, 759
Bsu36I CCTNAGG 1 cut(s) 184
BsuI GTATCC 1 cut(s) 704
BsuRI GGCC 1 cut(s) 129
BtgI CCRYGG 1 cut(s) 116
BtsI GCAGTG 2 cut(s) 590, 673
BtsIMutI CAGTG 3 cut(s) 590, 673, 866
Cfr13I GGNCC 3 cut(s) 144, 297, 371
Csp6I GTAC 2 cut(s) 402, 871
CviAII CATG 2 cut(s) 337, 359
CviQI GTAC 2 cut(s) 402, 871
DdeI CTNAG 2 cut(s) 184, 477
DpnI GATC 4 cut(s) 221, 335, 594, 761
DpnII GATC 4 cut(s) 219, 333, 592, 759
Eam1104I CTCTTC 5 cut(s) 47, 80, 733, 786, 842
EarI CTCTTC 5 cut(s) 47, 80, 733, 786, 842
Eco47I GGWCC 3 cut(s) 144, 297, 371
Eco81I CCTNAGG 1 cut(s) 184
Eco88I CYCGRG 1 cut(s) 10
EcoRII CCWGG 1 cut(s) 427
FaeI CATG 2 cut(s) 340, 362
FalI AAGNNNNNCTT 3 cut(s) 29, 61, 888
FatI CATG 2 cut(s) 336, 358
FauNDI CATATG 1 cut(s) 765
Fnu4HI GCNGC 2 cut(s) 496, 605
Fsp4HI GCNGC 2 cut(s) 496, 605
FspBI CTAG 2 cut(s) 399, 830
GluI GCNGC 2 cut(s) 496, 605
GsuI CTGGAG 1 cut(s) 646
HaeIII GGCC 1 cut(s) 129
HapII CCGG 3 cut(s) 67, 295, 306
Hin1II CATG 2 cut(s) 340, 362
HindIII AAGCTT 1 cut(s) 521
HinfI GANTC 5 cut(s) 179, 355, 506, 558, 718
HpaII CCGG 3 cut(s) 67, 295, 306
HphI GGTGA 1 cut(s) 515
Hpy166II GTNNAC 2 cut(s) 195, 473
Hpy188I TCNGA 3 cut(s) 205, 229, 690
Hpy188III TCNNGA 1 cut(s) 86
Hpy8I GTNNAC 2 cut(s) 195, 473
Hpy99I CGWCG 1 cut(s) 83
HpyAV CCTTC 3 cut(s) 71, 135, 890
HpyCH4III ACNGT 4 cut(s) 83, 161, 262, 870
HpyCH4V TGCA 8 cut(s) 289, 423, 583, 604, 618, 810, 866, 893
HpyF10VI GCNNNNNNNGC 1 cut(s) 529
HpyF3I CTNAG 2 cut(s) 184, 477
Hsp92II CATG 2 cut(s) 340, 362
Kzo9I GATC 4 cut(s) 219, 333, 592, 759
LguI GCTCTTC 3 cut(s) 47, 733, 842
LmnI GCTCC 1 cut(s) 837
Lsp1109I GCAGC 1 cut(s) 616
MaeI CTAG 2 cut(s) 399, 830
MaeIII GTNAC 4 cut(s) 322, 386, 431, 611
MalI GATC 4 cut(s) 221, 335, 594, 761
MboI GATC 4 cut(s) 219, 333, 592, 759
MboII GAAGA 9 cut(s) 34, 67, 264, 420, 508, 553, 720, 803, 859
MflI RGATCY 2 cut(s) 592, 759
MluCI AATT 1 cut(s) 484
MlyI GAGTC 2 cut(s) 515, 712
MnlI CCTC 3 cut(s) 494, 522, 583
MroXI GAANNNNTTC 1 cut(s) 415
MslI CAYNNNNRTG 1 cut(s) 578
MspA1I CMGCKG 1 cut(s) 607
MspI CCGG 3 cut(s) 67, 295, 306
MspR9I CCNGG 2 cut(s) 306, 429
Mva1269I GAATGC 1 cut(s) 423
MvaI CCWGG 1 cut(s) 429
MvnI CGCG 1 cut(s) 642
MwoI GCNNNNNNNGC 1 cut(s) 529
NciI CCSGG 1 cut(s) 306
NdeI CATATG 1 cut(s) 765
NdeII GATC 4 cut(s) 219, 333, 592, 759
NlaIII CATG 2 cut(s) 340, 362
NmuCI GTSAC 2 cut(s) 322, 386
PciSI GCTCTTC 3 cut(s) 47, 733, 842
PctI GAATGC 1 cut(s) 423
PdmI GAANNNNTTC 1 cut(s) 415
PfeI GAWTC 3 cut(s) 179, 355, 558
PkrI GCNGC 2 cut(s) 497, 606
PleI GAGTC 2 cut(s) 514, 712
PpsI GAGTC 2 cut(s) 514, 712
Psp6I CCWGG 1 cut(s) 427
PspGI CCWGG 1 cut(s) 427
PspPI GGNCC 3 cut(s) 144, 297, 371
PsuI RGATCY 2 cut(s) 592, 759
PvuII CAGCTG 1 cut(s) 607
RsaI GTAC 2 cut(s) 403, 872
RsaNI GTAC 2 cut(s) 402, 871
RseI CAYNNNNRTG 1 cut(s) 578
SapI GCTCTTC 3 cut(s) 47, 733, 842
SatI GCNGC 2 cut(s) 496, 605
Sau3AI GATC 4 cut(s) 219, 333, 592, 759
Sau96I GGNCC 3 cut(s) 144, 297, 371
ScaI AGTACT 1 cut(s) 403
SchI GAGTC 2 cut(s) 515, 712
ScrFI CCNGG 2 cut(s) 306, 429
SinI GGWCC 3 cut(s) 144, 297, 371
SmiMI CAYNNNNRTG 1 cut(s) 578
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
Sse9I AATT 1 cut(s) 484
SsiI CCGC 3 cut(s) 495, 640, 888
SspMI CTAG 2 cut(s) 399, 830
StyD4I CCNGG 2 cut(s) 304, 427
TaaI ACNGT 4 cut(s) 83, 161, 262, 870
TaqI TCGA 3 cut(s) 78, 527, 534
TasI AATT 1 cut(s) 484
TatI WGTACW 2 cut(s) 401, 870
TauI GCSGC 1 cut(s) 498
TfiI GAWTC 3 cut(s) 179, 355, 558
TscAI CASTG 3 cut(s) 590, 673, 873
TseFI GTSAC 2 cut(s) 322, 386
TseI GCWGC 1 cut(s) 604
Tsp45I GTSAC 2 cut(s) 322, 386
TspDTI ATGAA 2 cut(s) 189, 347
TspGWI ACGGA 1 cut(s) 570
TspRI CASTG 3 cut(s) 590, 673, 873
VpaK11BI GGWCC 3 cut(s) 144, 297, 371
XmnI GAANNNNTTC 1 cut(s) 415
XspI CTAG 2 cut(s) 399, 830
ZrmI AGTACT 1 cut(s) 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.