Rh6BG031200

Squalene monooxygenase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0022229
Physical Location & Seq
Forward (+)
4764918 .. 4765250
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG031200.1

Sequence Viewer

Length: 258 bp
ATGGTTTCTTACGAGTACGTTCTGGGTGGAGTCCTGGCTTCTCTGCTGGCCTCTGTTTTCATCATGATAATCAATAGTAGTAGAAAGGTGAAGGTGGTGGGGGGTGCAAGGAGTGTTAATGGGTTTGTGAGGTTGCCGCAAAACGGTGCGTTTGCGCCGGCGGTGGTGGTGGAGGAGGAGAAAGGTACCGACGTCGTCATTGTCGGCGCCGGAGTTGCCGGTGCAGCTCTTGCTTACACTCTTGCCAAGGAGACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00100 ko00909 ko01100 ko01110 ko01130 map00100 map00909 map01100 map01110 map01130
Pfam Domains
Protein Families
SE

Protein Analysis

85

Amino Acids

8.7

Weight (kDa)

8.06

Isoelectric Point (pI)

22.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g03871
rosa_multiflora Rmu_sc0001293.1_g000028 Rmu_sc0003131.1_g000038
rosa_samantha Rh6BG031200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 195
Acc65I GGTACC 1 cut(s) 185
AccB1I GGYRCC 2 cut(s) 185, 206
AciI CCGC 2 cut(s) 137, 161
AcyI GRCGYC 2 cut(s) 192, 207
AfaI GTAC 2 cut(s) 17, 187
AfiI CCNNNNNNNGG 1 cut(s) 143
AjnI CCWGG 1 cut(s) 33
AluBI AGCT 1 cut(s) 227
AluI AGCT 1 cut(s) 227
Alw26I GTCTC 1 cut(s) 245
AoxI GGCC 1 cut(s) 48
ApeKI GCWGC 1 cut(s) 224
Asp718I GGTACC 1 cut(s) 185
AspLEI GCGC 2 cut(s) 157, 209
AsuHPI GGTGA 1 cut(s) 100
BaeI ACNNNNGTAYC 2 cut(s) 177, 210
BanI GGYRCC 2 cut(s) 185, 206
BbvI GCAGC 1 cut(s) 236
BciT130I CCWGG 1 cut(s) 35
BcoDI GTCTC 1 cut(s) 245
BfoI RGCGCY 1 cut(s) 210
BisI GCNGC 2 cut(s) 137, 225
BlsI GCNGC 2 cut(s) 138, 226
Bme1390I CCNGG 1 cut(s) 35
BmiI GGNNCC 2 cut(s) 187, 208
BmrFI CCNGG 1 cut(s) 35
BsaHI GRCGYC 2 cut(s) 192, 207
BsaJI CCNNGG 1 cut(s) 246
Bsc4I CCNNNNNNNGG 1 cut(s) 143
Bse118I RCCGGY 2 cut(s) 157, 218
BseBI CCWGG 1 cut(s) 35
BseDI CCNNGG 1 cut(s) 246
BseLI CCNNNNNNNGG 1 cut(s) 143
BseRI GAGGAG 2 cut(s) 188, 191
BseXI GCAGC 1 cut(s) 236
BsgI GTGCAG 1 cut(s) 243
BshFI GGCC 1 cut(s) 50
BshNI GGYRCC 2 cut(s) 185, 206
BsiSI CCGG 3 cut(s) 158, 210, 219
BslI CCNNNNNNNGG 1 cut(s) 143
BsmAI GTCTC 1 cut(s) 245
BsmBI CGTCTC 1 cut(s) 245
BsnI GGCC 1 cut(s) 50
BspACI CCGC 2 cut(s) 137, 161
BspANI GGCC 1 cut(s) 50
BspHI TCATGA 1 cut(s) 63
BspLI GGNNCC 2 cut(s) 187, 208
BspT107I GGYRCC 2 cut(s) 185, 206
BsrFI RCCGGY 2 cut(s) 157, 218
BssAI RCCGGY 2 cut(s) 157, 218
BssECI CCNNGG 1 cut(s) 246
BssNI GRCGYC 2 cut(s) 192, 207
BssT1I CCWWGG 1 cut(s) 246
Bst2UI CCWGG 1 cut(s) 35
Bst4CI ACNGT 1 cut(s) 146
BstACI GRCGYC 2 cut(s) 192, 207
BstAPI GCANNNNNTGC 1 cut(s) 230
BstC8I GCNNGC 2 cut(s) 48, 159
BstH2I RGCGCY 1 cut(s) 210
BstHHI GCGC 2 cut(s) 157, 209
BstMAI GTCTC 1 cut(s) 245
BstMWI GCNNNNNNNGC 3 cut(s) 215, 224, 230
BstNI CCWGG 1 cut(s) 35
BstSCI CCNGG 1 cut(s) 33
BstV1I GCAGC 1 cut(s) 236
BsuRI GGCC 1 cut(s) 50
Cac8I GCNNGC 2 cut(s) 48, 159
CciI TCATGA 1 cut(s) 63
CfoI GCGC 2 cut(s) 157, 209
Cfr10I RCCGGY 2 cut(s) 157, 218
Csp6I GTAC 2 cut(s) 16, 186
CviAII CATG 1 cut(s) 64
CviJI RGCY 3 cut(s) 38, 50, 227
CviKI_1 RGCY 3 cut(s) 38, 50, 227
CviQI GTAC 2 cut(s) 16, 186
DinI GGCGCC 1 cut(s) 208
Eco130I CCWWGG 1 cut(s) 246
EcoRII CCWGG 1 cut(s) 33
EcoT14I CCWWGG 1 cut(s) 246
EgeI GGCGCC 1 cut(s) 208
EheI GGCGCC 1 cut(s) 208
ErhI CCWWGG 1 cut(s) 246
Esp3I CGTCTC 1 cut(s) 245
FaeI CATG 1 cut(s) 67
FaiI YATR 1 cut(s) 65
FatI CATG 1 cut(s) 63
Fnu4HI GCNGC 2 cut(s) 137, 225
Fsp4HI GCNGC 2 cut(s) 137, 225
GlaI GCGC 2 cut(s) 156, 208
GluI GCNGC 2 cut(s) 137, 225
HaeII RGCGCY 1 cut(s) 210
HaeIII GGCC 1 cut(s) 50
HapII CCGG 3 cut(s) 158, 210, 219
HhaI GCGC 2 cut(s) 157, 209
Hin1I GRCGYC 2 cut(s) 192, 207
Hin1II CATG 1 cut(s) 67
Hin6I GCGC 2 cut(s) 155, 207
HinP1I GCGC 2 cut(s) 155, 207
HinfI GANTC 1 cut(s) 30
HpaII CCGG 3 cut(s) 158, 210, 219
HphI GGTGA 1 cut(s) 100
Hpy188III TCNNGA 1 cut(s) 64
Hpy99I CGWCG 2 cut(s) 194, 197
HpyAV CCTTC 1 cut(s) 85
HpyCH4III ACNGT 1 cut(s) 146
HpyCH4IV ACGT 3 cut(s) 18, 192, 254
HpyCH4V TGCA 2 cut(s) 107, 224
HpyF10VI GCNNNNNNNGC 3 cut(s) 215, 224, 230
HpySE526I ACGT 3 cut(s) 18, 192, 254
Hsp92I GRCGYC 2 cut(s) 192, 207
Hsp92II CATG 1 cut(s) 67
HspAI GCGC 2 cut(s) 155, 207
KasI GGCGCC 1 cut(s) 206
KpnI GGTACC 1 cut(s) 189
KroI GCCGGC 1 cut(s) 157
KroNI GCCGGC 1 cut(s) 159
LpnPI CCDG 7 cut(s) 8, 20, 32, 47, 171, 223, 232
Lsp1109I GCAGC 1 cut(s) 236
MaeII ACGT 3 cut(s) 18, 192, 254
Mly113I GGCGCC 1 cut(s) 207
MlyI GAGTC 1 cut(s) 39
MnlI CCTC 4 cut(s) 61, 123, 166, 169
MreI CGCCGGCG 1 cut(s) 157
MroNI GCCGGC 1 cut(s) 157
MseI TTAA 1 cut(s) 117
MspI CCGG 3 cut(s) 158, 210, 219
MspR9I CCNGG 1 cut(s) 35
MvaI CCWGG 1 cut(s) 35
MwoI GCNNNNNNNGC 3 cut(s) 215, 224, 230
NaeI GCCGGC 1 cut(s) 159
NarI GGCGCC 1 cut(s) 207
NgoMIV GCCGGC 1 cut(s) 157
NlaIII CATG 1 cut(s) 67
NlaIV GGNNCC 2 cut(s) 187, 208
PagI TCATGA 1 cut(s) 63
PdiI GCCGGC 1 cut(s) 159
PflFI GACNNNGTC 1 cut(s) 194
PkrI GCNGC 2 cut(s) 138, 226
PleI GAGTC 1 cut(s) 38
PluTI GGCGCC 1 cut(s) 210
PpsI GAGTC 1 cut(s) 38
Psp6I CCWGG 1 cut(s) 33
PspGI CCWGG 1 cut(s) 33
PspN4I GGNNCC 2 cut(s) 187, 208
PsyI GACNNNGTC 1 cut(s) 194
RsaI GTAC 2 cut(s) 17, 187
RsaNI GTAC 2 cut(s) 16, 186
SaqAI TTAA 1 cut(s) 117
SatI GCNGC 2 cut(s) 137, 225
SchI GAGTC 1 cut(s) 39
ScrFI CCNGG 1 cut(s) 35
SetI ASST 8 cut(s) 21, 90, 96, 134, 187, 195, 229, 257
SfoI GGCGCC 1 cut(s) 208
SgrAI CRCCGGYG 1 cut(s) 157
SsiI CCGC 2 cut(s) 137, 161
SspDI GGCGCC 1 cut(s) 206
StyD4I CCNGG 1 cut(s) 33
StyI CCWWGG 1 cut(s) 246
TaaI ACNGT 1 cut(s) 146
TaiI ACGT 3 cut(s) 21, 195, 257
TauI GCSGC 1 cut(s) 139
Tru1I TTAA 1 cut(s) 117
Tru9I TTAA 1 cut(s) 117
TseI GCWGC 1 cut(s) 224
TspDTI ATGAA 1 cut(s) 49
Tth111I GACNNNGTC 1 cut(s) 194
ZraI GACGTC 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.