Rh6BG135700

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0033341
Physical Location & Seq
Reverse (-)
21488314 .. 21504274
15961 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG135700.1

Sequence Viewer

Length: 993 bp
ATGAGTGATTCAGGGTCGAGTGATGAGCGATTGATGCCAAGGAGTAAAGTTGGGTCGGAGACTATTCGGGTTTGTAATGGTTTGGACAAGGGCATTGTGGAAGGGGGCGGAATGGTTCCGAAGAGGGAGAGACTAGAGCCTGGTAGGCGGAATGAGGATGGAACTGATTACTTTTCCATTGCTACCTATGATGAAGCTATTCCGGCTCATATTGCTTTTCTAAAGGGAAGGGCATCTGCAAAATCTTCAGCCAACTATTATCAGTGCAGTTCTCCCTTGCTCATTTTAGAGAAAAGGCAATGCAATTTCCAGCTGCATTGCTGGCACAACATCAGATTTCTTAATCAAGTCAAGCTGGCTTTCTCCTCAATATACAATGCTGGAGTAGAACCAAATGTTCACACATATGGGGCACTGATTGATGGCTGTGGCAGAGCTGGGCAAGTGGCAAAGGCATTTGGTGCTTATGGGATAATGAGGTCTAAGGAAACCATGGCAAAACTTGTGGTGTCCGGCGTTGCTAAAAGCCTTGCTGACCTGCTCAAGGACCTGCTCCTGGAGGAATCTAAATCCATGCTAAGGGTGAGGCAAAACGTTAGGGATATCCAAAAAGAATTGACGCTGATAAATTGTGTCTTGAAAGATGCGGACGAGAAGCAAGAGCAAGATAACGGCCTTCAAAATTGGGTTTCAGACATACGAGAAATCGCTTATGATGCTAAGGATGTCATTCGAACGTTTTCCATCAGACTTGTAATGCGAATCTCAAATCCAGTCAAATGGTATGCCTGGTTGAATCTAGGCCAACTTCGACACCGTTGCAAAGTTGGGTCTGAGATTAAAGCCATAAAAGCTGAAATCTCTAGCCTTCGCATATCTTCCCAAACCTATAACTTGATTTCTGTTGGACAAGGGGCATCCAGCAATGCTCTTGATGATCGGCAGCAATATTCCCATGAAAATGAGGATATTGTACGTTGGGTTCGAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

330

Amino Acids

37.05

Weight (kDa)

9.05

Isoelectric Point (pI)

41.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_1 PF12854 128 - 153 9.9e-07 PPR repeat
Rx_N PF18052 175 - 252 3e-20 Rx N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0033341)

Species Orthologous Gene IDs
rosa_samantha Rh6BG135700 Rh6DG120400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 546, 558
AciI CCGC 3 cut(s) 108, 148, 647
AclI AACGTT 2 cut(s) 594, 737
AcuI CTGAAG 1 cut(s) 231
AfaI GTAC 1 cut(s) 975
AfiI CCNNNNNNNGG 3 cut(s) 544, 556, 579
AgsI TTSAA 3 cut(s) 640, 680, 796
AjnI CCWGG 3 cut(s) 139, 555, 788
AluBI AGCT 5 cut(s) 197, 313, 355, 437, 854
AluI AGCT 5 cut(s) 197, 313, 355, 437, 854
Alw26I GTCTC 2 cut(s) 53, 124
AoxI GGCC 2 cut(s) 673, 802
ApeKI GCWGC 2 cut(s) 313, 943
Asp700I GAANNNNTTC 2 cut(s) 198, 739
AspS9I GGNCC 1 cut(s) 547
AsuHPI GGTGA 1 cut(s) 595
AsuII TTCGAA 2 cut(s) 733, 985
AvaII GGWCC 1 cut(s) 547
BaeGI GKGCMC 1 cut(s) 415
BbvI GCAGC 2 cut(s) 300, 955
BccI CCATC 3 cut(s) 152, 416, 752
BceAI ACGGC 1 cut(s) 688
BcgI CGANNNNNNTGC 2 cut(s) 801, 835
BciT130I CCWGG 3 cut(s) 141, 557, 790
BcoDI GTCTC 2 cut(s) 53, 124
BfaI CTAG 3 cut(s) 134, 800, 864
BfuAI ACCTGC 2 cut(s) 546, 558
BglI GCCNNNNNGGC 1 cut(s) 145
BisI GCNGC 2 cut(s) 314, 944
BlsI GCNGC 2 cut(s) 315, 945
Bme1390I CCNGG 3 cut(s) 141, 557, 790
Bme18I GGWCC 1 cut(s) 547
BmgT120I GGNCC 1 cut(s) 547
BmiI GGNNCC 1 cut(s) 117
BmrFI CCNGG 3 cut(s) 141, 557, 790
BmsI GCATC 5 cut(s) 24, 242, 634, 706, 926
BpmI CTGGAG 2 cut(s) 402, 578
Bpu10I CCTNAGC 2 cut(s) 578, 720
Bpu14I TTCGAA 2 cut(s) 733, 985
BpuEI CTTGAG 1 cut(s) 527
BsaJI CCNNGG 2 cut(s) 38, 492
Bsc4I CCNNNNNNNGG 3 cut(s) 544, 556, 579
Bse1I ACTGG 1 cut(s) 773
Bse3DI GCAATG 4 cut(s) 177, 305, 316, 931
BseBI CCWGG 3 cut(s) 141, 557, 790
BseDI CCNNGG 2 cut(s) 38, 492
BseGI GGATG 3 cut(s) 163, 730, 917
BseLI CCNNNNNNNGG 3 cut(s) 544, 556, 579
BseMI GCAATG 4 cut(s) 177, 305, 316, 931
BseMII CTCAG 1 cut(s) 825
BseNI ACTGG 1 cut(s) 773
BseRI GAGGAG 1 cut(s) 355
BseSI GKGCMC 1 cut(s) 415
BseXI GCAGC 2 cut(s) 300, 955
BseYI CCCAGC 1 cut(s) 437
BsgI GTGCAG 1 cut(s) 286
BshFI GGCC 2 cut(s) 675, 804
BsiSI CCGG 2 cut(s) 203, 513
BslI CCNNNNNNNGG 3 cut(s) 544, 556, 579
BsmAI GTCTC 2 cut(s) 53, 124
BsnI GGCC 2 cut(s) 675, 804
Bsp119I TTCGAA 2 cut(s) 733, 985
Bsp1286I GDGCHC 1 cut(s) 415
Bsp143I GATC 1 cut(s) 937
Bsp19I CCATGG 1 cut(s) 492
BspACI CCGC 3 cut(s) 108, 148, 647
BspANI GGCC 2 cut(s) 675, 804
BspCNI CTCAG 1 cut(s) 826
BspLI GGNNCC 1 cut(s) 117
BspMI ACCTGC 2 cut(s) 546, 558
BspT104I TTCGAA 2 cut(s) 733, 985
BsrDI GCAATG 4 cut(s) 177, 305, 316, 931
BsrI ACTGG 1 cut(s) 773
BssECI CCNNGG 2 cut(s) 38, 492
BssMI GATC 1 cut(s) 937
BssT1I CCWWGG 2 cut(s) 38, 492
Bst2UI CCWGG 3 cut(s) 141, 557, 790
Bst4CI ACNGT 1 cut(s) 818
Bst6I CTCTTC 1 cut(s) 116
BstAPI GCANNNNNTGC 1 cut(s) 461
BstBI TTCGAA 2 cut(s) 733, 985
BstC8I GCNNGC 2 cut(s) 323, 357
BstDEI CTNAG 4 cut(s) 483, 578, 720, 834
BstDSI CCRYGG 1 cut(s) 492
BstENI CCTNNNNNAGG 1 cut(s) 542
BstF5I GGATG 3 cut(s) 163, 730, 917
BstKTI GATC 1 cut(s) 940
BstMAI GTCTC 2 cut(s) 53, 124
BstMBI GATC 1 cut(s) 937
BstMWI GCNNNNNNNGC 8 cut(s) 34, 145, 203, 212, 322, 461, 716, 851
BstNI CCWGG 3 cut(s) 141, 557, 790
BstSCI CCNGG 3 cut(s) 139, 555, 788
BstSLI GKGCMC 1 cut(s) 415
BstV1I GCAGC 2 cut(s) 300, 955
BstXI CCANNNNNNTGG 1 cut(s) 780
BsuRI GGCC 2 cut(s) 675, 804
BtgI CCRYGG 1 cut(s) 492
BtsCI GGATG 3 cut(s) 163, 730, 917
BtsIMutI CAGTG 2 cut(s) 269, 413
BveI ACCTGC 2 cut(s) 546, 558
Cac8I GCNNGC 2 cut(s) 323, 357
Cfr13I GGNCC 1 cut(s) 547
CseI GACGC 1 cut(s) 628
Csp6I GTAC 1 cut(s) 974
CspCI CAANNNNNGTGG 2 cut(s) 486, 521
CviAII CATG 3 cut(s) 493, 574, 956
CviQI GTAC 1 cut(s) 974
DdeI CTNAG 4 cut(s) 483, 578, 720, 834
DpnI GATC 1 cut(s) 939
DpnII GATC 1 cut(s) 937
Eam1104I CTCTTC 1 cut(s) 116
EarI CTCTTC 1 cut(s) 116
EciI GGCGGA 2 cut(s) 123, 163
Eco130I CCWWGG 2 cut(s) 38, 492
Eco32I GATATC 1 cut(s) 604
Eco47I GGWCC 1 cut(s) 547
Eco57I CTGAAG 1 cut(s) 231
EcoNI CCTNNNNNAGG 1 cut(s) 542
EcoO109I RGGNCCY 1 cut(s) 547
EcoRII CCWGG 3 cut(s) 139, 555, 788
EcoRV GATATC 1 cut(s) 604
EcoT14I CCWWGG 2 cut(s) 38, 492
ErhI CCWWGG 2 cut(s) 38, 492
FaeI CATG 3 cut(s) 496, 577, 959
FatI CATG 3 cut(s) 492, 573, 955
FauNDI CATATG 1 cut(s) 406
Fnu4HI GCNGC 2 cut(s) 314, 944
FokI GGATG 3 cut(s) 170, 737, 904
Fsp4HI GCNGC 2 cut(s) 314, 944
FspBI CTAG 3 cut(s) 134, 800, 864
GluI GCNGC 2 cut(s) 314, 944
GsaI CCCAGC 1 cut(s) 441
GsuI CTGGAG 2 cut(s) 402, 578
HaeIII GGCC 2 cut(s) 675, 804
HapII CCGG 2 cut(s) 203, 513
HgaI GACGC 1 cut(s) 628
Hin1II CATG 3 cut(s) 496, 577, 959
HinfI GANTC 4 cut(s) 8, 563, 762, 796
HpaII CCGG 2 cut(s) 203, 513
HphI GGTGA 1 cut(s) 595
Hpy166II GTNNAC 1 cut(s) 400
Hpy188I TCNGA 6 cut(s) 58, 120, 335, 694, 749, 835
Hpy188III TCNNGA 2 cut(s) 637, 932
Hpy8I GTNNAC 1 cut(s) 400
HpyAV CCTTC 4 cut(s) 95, 222, 686, 878
HpyCH4III ACNGT 1 cut(s) 818
HpyCH4IV ACGT 3 cut(s) 594, 737, 976
HpyCH4V TGCA 5 cut(s) 239, 267, 303, 316, 822
HpyF10VI GCNNNNNNNGC 8 cut(s) 34, 145, 203, 212, 322, 461, 716, 851
HpyF3I CTNAG 4 cut(s) 483, 578, 720, 834
HpySE526I ACGT 3 cut(s) 594, 737, 976
Hsp92II CATG 3 cut(s) 496, 577, 959
Kzo9I GATC 1 cut(s) 937
LmnI GCTCC 1 cut(s) 558
Lsp1109I GCAGC 2 cut(s) 300, 955
LweI GCATC 5 cut(s) 24, 242, 634, 706, 926
MaeI CTAG 3 cut(s) 134, 800, 864
MaeII ACGT 3 cut(s) 594, 737, 976
MalI GATC 1 cut(s) 939
MboI GATC 1 cut(s) 937
MboII GAAGA 3 cut(s) 133, 237, 870
MhlI GDGCHC 1 cut(s) 415
MluCI AATT 4 cut(s) 304, 614, 628, 682
MmeI TCCRAC 2 cut(s) 36, 886
MnlI CCTC 7 cut(s) 117, 148, 376, 471, 553, 579, 958
MroXI GAANNNNTTC 2 cut(s) 198, 739
MseI TTAA 2 cut(s) 342, 840
MslI CAYNNNNRTG 2 cut(s) 405, 960
MspA1I CMGCKG 1 cut(s) 313
MspI CCGG 2 cut(s) 203, 513
MspR9I CCNGG 3 cut(s) 141, 557, 790
MvaI CCWGG 3 cut(s) 141, 557, 790
MwoI GCNNNNNNNGC 8 cut(s) 34, 145, 203, 212, 322, 461, 716, 851
NcoI CCATGG 1 cut(s) 492
NdeI CATATG 1 cut(s) 406
NdeII GATC 1 cut(s) 937
NlaIII CATG 3 cut(s) 496, 577, 959
NlaIV GGNNCC 1 cut(s) 117
NspV TTCGAA 2 cut(s) 733, 985
PcsI WCGNNNNNNNCGW 1 cut(s) 982
PdmI GAANNNNTTC 2 cut(s) 198, 739
PfeI GAWTC 4 cut(s) 8, 563, 762, 796
PfoI TCCNGGA 1 cut(s) 555
PkrI GCNGC 2 cut(s) 315, 945
PpuMI RGGWCCY 1 cut(s) 547
Psp1406I AACGTT 2 cut(s) 594, 737
Psp5II RGGWCCY 1 cut(s) 547
Psp6I CCWGG 3 cut(s) 139, 555, 788
PspFI CCCAGC 1 cut(s) 437
PspGI CCWGG 3 cut(s) 139, 555, 788
PspN4I GGNNCC 1 cut(s) 117
PspPI GGNCC 1 cut(s) 547
PspPPI RGGWCCY 1 cut(s) 547
PsrI GAACNNNNNNTAC 1 cut(s) 966
PvuII CAGCTG 1 cut(s) 313
RsaI GTAC 1 cut(s) 975
RsaNI GTAC 1 cut(s) 974
RseI CAYNNNNRTG 2 cut(s) 405, 960
SaqAI TTAA 2 cut(s) 342, 840
SatI GCNGC 2 cut(s) 314, 944
Sau3AI GATC 1 cut(s) 937
Sau96I GGNCC 1 cut(s) 547
ScrFI CCNGG 3 cut(s) 141, 557, 790
SduI GDGCHC 1 cut(s) 415
SfaNI GCATC 5 cut(s) 24, 242, 634, 706, 926
SfuI TTCGAA 2 cut(s) 733, 985
SinI GGWCC 1 cut(s) 547
SmiMI CAYNNNNRTG 2 cut(s) 405, 960
SmlI CTYRAG 1 cut(s) 542
SmoI CTYRAG 1 cut(s) 542
Sse9I AATT 4 cut(s) 304, 614, 628, 682
SsiI CCGC 3 cut(s) 108, 148, 647
SspI AATATT 1 cut(s) 950
SspMI CTAG 3 cut(s) 134, 800, 864
StyD4I CCNGG 3 cut(s) 139, 555, 788
StyI CCWWGG 2 cut(s) 38, 492
TaaI ACNGT 1 cut(s) 818
TaiI ACGT 3 cut(s) 597, 740, 979
TaqI TCGA 4 cut(s) 17, 733, 811, 985
TasI AATT 4 cut(s) 304, 614, 628, 682
TfiI GAWTC 4 cut(s) 8, 563, 762, 796
Tru1I TTAA 2 cut(s) 342, 840
Tru9I TTAA 2 cut(s) 342, 840
TscAI CASTG 2 cut(s) 269, 420
TseI GCWGC 2 cut(s) 313, 943
TspDTI ATGAA 2 cut(s) 207, 972
TspRI CASTG 2 cut(s) 269, 420
VpaK11BI GGWCC 1 cut(s) 547
XagI CCTNNNNNAGG 1 cut(s) 542
XmnI GAANNNNTTC 2 cut(s) 198, 739
XspI CTAG 3 cut(s) 134, 800, 864
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.