Rh6DG120400

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0033341
Physical Location & Seq
Reverse (-)
16543020 .. 16543520
501 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG120400.1

Sequence Viewer

Length: 501 bp
ATGGCAAAACTTGTGGTGTCCGGCGTTGCTAAAAGCCTTGCTGACCTGCTCAAGGACCTGCTCCTGGAGGAATCTAAATCCATGCTAAGGGTGAGGCAAAACGTTAGGGATATCCAAAAAGAATTGACGCTGATAAATTGTGTCTTGAAAGATGCGGACGAGAAGCAAGAGCAAGATAACGGCCTTCAAAATTGGGTTTCAGACATACGAGAAATCGCTTATGATGCTAAGGATGTCATTCGAACGTTTTCCATCAGACTTGTAATGCGAATCTCAAATCCAGTCAAATGGTATGCCTGGTTGAATCTAGGCCAACTTCGACACCGTTGCAAAGTTGGGTCTGAGATTAAAGCCATAAAAGCTGAAATCTCTAGCCTTCGCATATCTTCCCAAACCTATAACTTGATTTCTGTTGGACAAGGGGCATCCAGCAATGCTCTTGATGATCGGCAGCAATATTCCCATGAAAATGAGGATATTGTACGTTGGGTTCGAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

166

Amino Acids

19.04

Weight (kDa)

9.1

Isoelectric Point (pI)

37.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 11 - 87 6.6e-21 Rx N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0033341)

Species Orthologous Gene IDs
rosa_samantha Rh6BG135700 Rh6DG120400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 54, 66
AciI CCGC 1 cut(s) 155
AclI AACGTT 2 cut(s) 102, 245
AfaI GTAC 1 cut(s) 483
AfiI CCNNNNNNNGG 3 cut(s) 52, 64, 87
AgsI TTSAA 3 cut(s) 148, 188, 304
AjnI CCWGG 2 cut(s) 63, 296
AluBI AGCT 1 cut(s) 362
AluI AGCT 1 cut(s) 362
AoxI GGCC 2 cut(s) 181, 310
ApeKI GCWGC 1 cut(s) 451
Asp700I GAANNNNTTC 1 cut(s) 247
AspS9I GGNCC 1 cut(s) 55
AsuHPI GGTGA 1 cut(s) 103
AsuII TTCGAA 2 cut(s) 241, 493
AvaII GGWCC 1 cut(s) 55
BbvI GCAGC 1 cut(s) 463
BccI CCATC 1 cut(s) 260
BceAI ACGGC 1 cut(s) 196
BcgI CGANNNNNNTGC 2 cut(s) 309, 343
BciT130I CCWGG 2 cut(s) 65, 298
BfaI CTAG 2 cut(s) 308, 372
BfuAI ACCTGC 2 cut(s) 54, 66
BisI GCNGC 1 cut(s) 452
BlsI GCNGC 1 cut(s) 453
Bme1390I CCNGG 2 cut(s) 65, 298
Bme18I GGWCC 1 cut(s) 55
BmgT120I GGNCC 1 cut(s) 55
BmrFI CCNGG 2 cut(s) 65, 298
BmsI GCATC 3 cut(s) 142, 214, 434
BpmI CTGGAG 1 cut(s) 86
Bpu10I CCTNAGC 2 cut(s) 86, 228
Bpu14I TTCGAA 2 cut(s) 241, 493
BpuEI CTTGAG 1 cut(s) 35
Bsc4I CCNNNNNNNGG 3 cut(s) 52, 64, 87
Bse1I ACTGG 1 cut(s) 281
Bse3DI GCAATG 1 cut(s) 439
BseBI CCWGG 2 cut(s) 65, 298
BseGI GGATG 2 cut(s) 238, 425
BseLI CCNNNNNNNGG 3 cut(s) 52, 64, 87
BseMI GCAATG 1 cut(s) 439
BseMII CTCAG 1 cut(s) 333
BseNI ACTGG 1 cut(s) 281
BseXI GCAGC 1 cut(s) 463
BshFI GGCC 2 cut(s) 183, 312
BsiSI CCGG 1 cut(s) 21
BslI CCNNNNNNNGG 3 cut(s) 52, 64, 87
BsnI GGCC 2 cut(s) 183, 312
Bsp119I TTCGAA 2 cut(s) 241, 493
Bsp143I GATC 1 cut(s) 445
BspACI CCGC 1 cut(s) 155
BspANI GGCC 2 cut(s) 183, 312
BspCNI CTCAG 1 cut(s) 334
BspMI ACCTGC 2 cut(s) 54, 66
BspT104I TTCGAA 2 cut(s) 241, 493
BsrDI GCAATG 1 cut(s) 439
BsrI ACTGG 1 cut(s) 281
BssMI GATC 1 cut(s) 445
Bst2UI CCWGG 2 cut(s) 65, 298
Bst4CI ACNGT 1 cut(s) 326
BstBI TTCGAA 2 cut(s) 241, 493
BstDEI CTNAG 3 cut(s) 86, 228, 342
BstENI CCTNNNNNAGG 1 cut(s) 50
BstF5I GGATG 2 cut(s) 238, 425
BstKTI GATC 1 cut(s) 448
BstMBI GATC 1 cut(s) 445
BstMWI GCNNNNNNNGC 2 cut(s) 224, 359
BstNI CCWGG 2 cut(s) 65, 298
BstSCI CCNGG 2 cut(s) 63, 296
BstV1I GCAGC 1 cut(s) 463
BstXI CCANNNNNNTGG 1 cut(s) 288
BsuRI GGCC 2 cut(s) 183, 312
BtsCI GGATG 2 cut(s) 238, 425
BveI ACCTGC 2 cut(s) 54, 66
Cfr13I GGNCC 1 cut(s) 55
CseI GACGC 1 cut(s) 136
Csp6I GTAC 1 cut(s) 482
CspCI CAANNNNNGTGG 1 cut(s) 29
CviAII CATG 2 cut(s) 82, 464
CviJI RGCY 6 cut(s) 36, 183, 312, 353, 362, 375
CviKI_1 RGCY 6 cut(s) 36, 183, 312, 353, 362, 375
CviQI GTAC 1 cut(s) 482
DdeI CTNAG 3 cut(s) 86, 228, 342
DpnI GATC 1 cut(s) 447
DpnII GATC 1 cut(s) 445
Eco32I GATATC 1 cut(s) 112
Eco47I GGWCC 1 cut(s) 55
EcoNI CCTNNNNNAGG 1 cut(s) 50
EcoO109I RGGNCCY 1 cut(s) 55
EcoRII CCWGG 2 cut(s) 63, 296
EcoRV GATATC 1 cut(s) 112
FaeI CATG 2 cut(s) 85, 467
FaiI YATR 8 cut(s) 83, 206, 222, 294, 356, 383, 399, 465
FatI CATG 2 cut(s) 81, 463
Fnu4HI GCNGC 1 cut(s) 452
FokI GGATG 2 cut(s) 245, 412
Fsp4HI GCNGC 1 cut(s) 452
FspBI CTAG 2 cut(s) 308, 372
GluI GCNGC 1 cut(s) 452
GsuI CTGGAG 1 cut(s) 86
HaeIII GGCC 2 cut(s) 183, 312
HapII CCGG 1 cut(s) 21
HgaI GACGC 1 cut(s) 136
Hin1II CATG 2 cut(s) 85, 467
HinfI GANTC 3 cut(s) 71, 270, 304
HpaII CCGG 1 cut(s) 21
HphI GGTGA 1 cut(s) 103
Hpy188I TCNGA 3 cut(s) 202, 257, 343
Hpy188III TCNNGA 2 cut(s) 145, 440
HpyAV CCTTC 2 cut(s) 194, 386
HpyCH4III ACNGT 1 cut(s) 326
HpyCH4IV ACGT 3 cut(s) 102, 245, 484
HpyCH4V TGCA 1 cut(s) 330
HpyF10VI GCNNNNNNNGC 2 cut(s) 224, 359
HpyF3I CTNAG 3 cut(s) 86, 228, 342
HpySE526I ACGT 3 cut(s) 102, 245, 484
Hsp92II CATG 2 cut(s) 85, 467
Kzo9I GATC 1 cut(s) 445
LmnI GCTCC 1 cut(s) 66
LpnPI CCDG 9 cut(s) 34, 50, 59, 71, 77, 283, 294, 310, 442
Lsp1109I GCAGC 1 cut(s) 463
LweI GCATC 3 cut(s) 142, 214, 434
MaeI CTAG 2 cut(s) 308, 372
MaeII ACGT 3 cut(s) 102, 245, 484
MalI GATC 1 cut(s) 447
MboI GATC 1 cut(s) 445
MboII GAAGA 1 cut(s) 378
MluCI AATT 3 cut(s) 122, 136, 190
MmeI TCCRAC 1 cut(s) 394
MnlI CCTC 3 cut(s) 61, 87, 466
MroXI GAANNNNTTC 1 cut(s) 247
MseI TTAA 1 cut(s) 348
MslI CAYNNNNRTG 1 cut(s) 468
MspI CCGG 1 cut(s) 21
MspR9I CCNGG 2 cut(s) 65, 298
MvaI CCWGG 2 cut(s) 65, 298
MwoI GCNNNNNNNGC 2 cut(s) 224, 359
NdeII GATC 1 cut(s) 445
NlaIII CATG 2 cut(s) 85, 467
NspV TTCGAA 2 cut(s) 241, 493
PcsI WCGNNNNNNNCGW 1 cut(s) 490
PdmI GAANNNNTTC 1 cut(s) 247
PfeI GAWTC 3 cut(s) 71, 270, 304
PfoI TCCNGGA 1 cut(s) 63
PkrI GCNGC 1 cut(s) 453
PpuMI RGGWCCY 1 cut(s) 55
Psp1406I AACGTT 2 cut(s) 102, 245
Psp5II RGGWCCY 1 cut(s) 55
Psp6I CCWGG 2 cut(s) 63, 296
PspGI CCWGG 2 cut(s) 63, 296
PspPI GGNCC 1 cut(s) 55
PspPPI RGGWCCY 1 cut(s) 55
PsrI GAACNNNNNNTAC 1 cut(s) 474
RsaI GTAC 1 cut(s) 483
RsaNI GTAC 1 cut(s) 482
RseI CAYNNNNRTG 1 cut(s) 468
SaqAI TTAA 1 cut(s) 348
SatI GCNGC 1 cut(s) 452
Sau3AI GATC 1 cut(s) 445
Sau96I GGNCC 1 cut(s) 55
ScrFI CCNGG 2 cut(s) 65, 298
SetI ASST 7 cut(s) 48, 60, 105, 248, 364, 398, 487
SfaNI GCATC 3 cut(s) 142, 214, 434
SfuI TTCGAA 2 cut(s) 241, 493
SinI GGWCC 1 cut(s) 55
SmiMI CAYNNNNRTG 1 cut(s) 468
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
Sse9I AATT 3 cut(s) 122, 136, 190
SsiI CCGC 1 cut(s) 155
SspI AATATT 1 cut(s) 458
SspMI CTAG 2 cut(s) 308, 372
StyD4I CCNGG 2 cut(s) 63, 296
TaaI ACNGT 1 cut(s) 326
TaiI ACGT 3 cut(s) 105, 248, 487
TaqI TCGA 3 cut(s) 241, 319, 493
TasI AATT 3 cut(s) 122, 136, 190
TfiI GAWTC 3 cut(s) 71, 270, 304
Tru1I TTAA 1 cut(s) 348
Tru9I TTAA 1 cut(s) 348
TseI GCWGC 1 cut(s) 451
TspDTI ATGAA 1 cut(s) 480
VpaK11BI GGWCC 1 cut(s) 55
XagI CCTNNNNNAGG 1 cut(s) 50
XmnI GAANNNNTTC 1 cut(s) 247
XspI CTAG 2 cut(s) 308, 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.