Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0033602

Physical Location & Seq

Genomic Coordinates Forward (+)

21649644 .. 21662353

Gene Structure 12710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG136200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGGGAAGGCGACGGCACCAGTAAACGGAATAAGCCTCTCCAAATTATTGAGTGCCGTTCTTGGTGTTATCTTTCTGGCGCTTGTAGCTTTGGGCTACTTATTCATACGCAGAAGAGTAAAAAAGACGACGCACAATGCCCAGCCACAACAAAACAGTATTAACATCACCATCGAGGCCTTGCAATTTGACTTGGCAACTATCCAGATTGCGACAAATAAATTTTCTAGCGAAAATAAGTTAGGCCAAGGCGGTTTTGGTGAAGTTTTCAAGGCATGGCAATGCCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

96

Amino Acids

10.42

Weight (kDa)

10.01

Isoelectric Point (pI)

48.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0033602)

Species	Orthologous Gene IDs
rosa_samantha	Rh6AG137700 Rh6BG136200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	16
AciI	CCGC	1 cut(s)	252
AcsI	RAATTY	1 cut(s)	221
AfiI	CCNNNNNNNGG	1 cut(s)	26
AgsI	TTSAA	1 cut(s)	271
AluBI	AGCT	1 cut(s)	89
AluI	AGCT	1 cut(s)	89
AoxI	GGCC	2 cut(s)	177, 244
ApoI	RAATTY	1 cut(s)	221
AspLEI	GCGC	1 cut(s)	82
AsuHPI	GGTGA	2 cut(s)	160, 272
BanI	GGYRCC	1 cut(s)	16
BccI	CCATC	1 cut(s)	179
BceAI	ACGGC	2 cut(s)	30, 41
BfaI	CTAG	1 cut(s)	228
BfoI	RGCGCY	1 cut(s)	83
BmiI	GGNNCC	1 cut(s)	18
BsaJI	CCNNGG	1 cut(s)	247
Bsc4I	CCNNNNNNNGG	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	20
Bse3DI	GCAATG	1 cut(s)	287
BseDI	CCNNGG	1 cut(s)	247
BseLI	CCNNNNNNNGG	1 cut(s)	26
BseMI	GCAATG	1 cut(s)	287
BseNI	ACTGG	1 cut(s)	20
BseYI	CCCAGC	1 cut(s)	141
BshFI	GGCC	2 cut(s)	179, 246
BshNI	GGYRCC	1 cut(s)	16
BslI	CCNNNNNNNGG	1 cut(s)	26
BsnI	GGCC	2 cut(s)	179, 246
BspACI	CCGC	1 cut(s)	252
BspANI	GGCC	2 cut(s)	179, 246
BspLI	GGNNCC	1 cut(s)	18
BspT107I	GGYRCC	1 cut(s)	16
BsrDI	GCAATG	1 cut(s)	287
BsrI	ACTGG	1 cut(s)	20
BssECI	CCNNGG	1 cut(s)	247
BssT1I	CCWWGG	1 cut(s)	247
Bst4CI	ACNGT	1 cut(s)	158
Bst6I	CTCTTC	1 cut(s)	109
BstH2I	RGCGCY	1 cut(s)	83
BstHHI	GCGC	1 cut(s)	82
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BsuRI	GGCC	2 cut(s)	179, 246
CfoI	GCGC	1 cut(s)	82
CseI	GACGC	1 cut(s)	139
CviAII	CATG	1 cut(s)	276
CviJI	RGCY	6 cut(s)	36, 89, 96, 145, 179, 246
CviKI_1	RGCY	6 cut(s)	36, 89, 96, 145, 179, 246
Eam1104I	CTCTTC	1 cut(s)	109
EarI	CTCTTC	1 cut(s)	109
Eco130I	CCWWGG	1 cut(s)	247
Eco147I	AGGCCT	1 cut(s)	179
EcoT14I	CCWWGG	1 cut(s)	247
ErhI	CCWWGG	1 cut(s)	247
FaeI	CATG	1 cut(s)	279
FaiI	YATR	2 cut(s)	107, 277
FatI	CATG	1 cut(s)	275
FspBI	CTAG	1 cut(s)	228
GlaI	GCGC	1 cut(s)	81
GsaI	CCCAGC	1 cut(s)	145
HaeII	RGCGCY	1 cut(s)	83
HaeIII	GGCC	2 cut(s)	179, 246
HgaI	GACGC	1 cut(s)	139
HhaI	GCGC	1 cut(s)	82
Hin1II	CATG	1 cut(s)	279
Hin6I	GCGC	1 cut(s)	80
HinP1I	GCGC	1 cut(s)	80
HphI	GGTGA	2 cut(s)	160, 272
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188III	TCNNGA	1 cut(s)	205
Hpy8I	GTNNAC	1 cut(s)	25
Hpy99I	CGWCG	2 cut(s)	16, 133
HpyCH4III	ACNGT	1 cut(s)	158
HpyCH4V	TGCA	1 cut(s)	184
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
Hsp92II	CATG	1 cut(s)	279
HspAI	GCGC	1 cut(s)	80
LpnPI	CCDG	4 cut(s)	33, 62, 155, 218
MaeI	CTAG	1 cut(s)	228
MboII	GAAGA	1 cut(s)	126
MluCI	AATT	3 cut(s)	44, 185, 221
MnlI	CCTC	2 cut(s)	47, 169
MseI	TTAA	1 cut(s)	162
MslI	CAYNNNNRTG	1 cut(s)	280
MwoI	GCNNNNNNNGC	1 cut(s)	86
NlaIII	CATG	1 cut(s)	279
NlaIV	GGNNCC	1 cut(s)	18
PceI	AGGCCT	1 cut(s)	179
PspFI	CCCAGC	1 cut(s)	141
PspN4I	GGNNCC	1 cut(s)	18
RseI	CAYNNNNRTG	1 cut(s)	280
SaqAI	TTAA	1 cut(s)	162
SetI	ASST	1 cut(s)	91
SmiMI	CAYNNNNRTG	1 cut(s)	280
Sse9I	AATT	3 cut(s)	44, 185, 221
SseBI	AGGCCT	1 cut(s)	179
SsiI	CCGC	1 cut(s)	252
SspMI	CTAG	1 cut(s)	228
StuI	AGGCCT	1 cut(s)	179
StyI	CCWWGG	1 cut(s)	247
TaaI	ACNGT	1 cut(s)	158
TaqI	TCGA	1 cut(s)	174
TasI	AATT	3 cut(s)	44, 185, 221
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TspDTI	ATGAA	1 cut(s)	94
TspGWI	ACGGA	1 cut(s)	42
XapI	RAATTY	1 cut(s)	221
XcmI	CCANNNNNNNNNTGG	1 cut(s)	254
XspI	CTAG	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.