Rh6BG260600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0020741
Physical Location & Seq
Reverse (-)
47438870 .. 47440070
1201 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG260600.1

Sequence Viewer

Length: 426 bp
ATGGGTATTTTGGTCATTTCCTTATCTATATCCTCCACCAAAGCAGAGTTGCAGATCCCATCTCCCTCCTCCTTCACCTCTTTGGTCTCCGATTCTCTCTCTTTCATTCGTTATCTTCTTCCTGTAGACTATTTAAAGCTCAGAAGCTCCGATCAAGCGGAGCAAGCTGGTCAGGACATTCCACAAGGTCATCAGCCTCCGAGCTGCAACCAAAATCGCTTCCGACAATGGCATTTGCAAGCTCAAGCCCAACGCCAAAGCCACCAAAGAGGAATACAATTTCGAAAAAATGGAGGATCTCAAAGCCAAGAACAGAGCTTTCATGGTGGCTTTTACTGGCCAAGCTCTTCACCGGAATCAATTCCATTAAAGCAGCTTATGTGGAGCTCCAAACAGCACAAGACCCATAAATTGAAGCTTCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

16.01

Weight (kDa)

9.93

Isoelectric Point (pI)

74.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020741)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003964.1_g000010
rosa_samantha Rh2BG233600 Rh5DG165000 Rh6BG260600 Rh7AG488700 Rh7BG423200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 126
AciI CCGC 1 cut(s) 158
AclWI GGATC 2 cut(s) 49, 304
AcoI YGGCCR 1 cut(s) 338
AgsI TTSAA 1 cut(s) 415
Alw21I GWGCWC 1 cut(s) 389
Alw26I GTCTC 1 cut(s) 91
AlwI GGATC 2 cut(s) 49, 304
AoxI GGCC 1 cut(s) 338
ApeKI GCWGC 2 cut(s) 204, 373
Asp700I GAANNNNTTC 1 cut(s) 360
AsuHPI GGTGA 2 cut(s) 67, 342
AsuII TTCGAA 1 cut(s) 283
BalI TGGCCA 1 cut(s) 340
BanII GRGCYC 1 cut(s) 389
Bbv12I GWGCWC 1 cut(s) 389
BbvI GCAGC 2 cut(s) 191, 385
BccI CCATC 1 cut(s) 67
BcoDI GTCTC 1 cut(s) 91
BfmI CTRYAG 1 cut(s) 123
BisI GCNGC 2 cut(s) 205, 374
BlsI GCNGC 2 cut(s) 206, 375
Bpu14I TTCGAA 1 cut(s) 283
BpuEI CTTGAG 1 cut(s) 228
BsaI GGTCTC 1 cut(s) 91
BsaWI WCCGGW 1 cut(s) 352
Bse1I ACTGG 1 cut(s) 341
BseMII CTCAG 1 cut(s) 154
BseNI ACTGG 1 cut(s) 341
BseRI GAGGAG 1 cut(s) 58
BseXI GCAGC 2 cut(s) 191, 385
BshFI GGCC 1 cut(s) 340
BsiHKAI GWGCWC 1 cut(s) 389
BsiSI CCGG 1 cut(s) 353
BsmAI GTCTC 1 cut(s) 91
BsnI GGCC 1 cut(s) 340
Bso31I GGTCTC 1 cut(s) 91
Bsp119I TTCGAA 1 cut(s) 283
Bsp1286I GDGCHC 1 cut(s) 389
Bsp143I GATC 3 cut(s) 54, 151, 296
BspACI CCGC 1 cut(s) 158
BspANI GGCC 1 cut(s) 340
BspCNI CTCAG 1 cut(s) 153
BspPI GGATC 2 cut(s) 49, 304
BspQI GCTCTTC 1 cut(s) 352
BspT104I TTCGAA 1 cut(s) 283
BspTNI GGTCTC 1 cut(s) 91
BsrI ACTGG 1 cut(s) 341
BssMI GATC 3 cut(s) 54, 151, 296
Bst6I CTCTTC 1 cut(s) 352
BstBI TTCGAA 1 cut(s) 283
BstC8I GCNNGC 2 cut(s) 165, 240
BstDEI CTNAG 1 cut(s) 140
BstKTI GATC 3 cut(s) 57, 154, 299
BstMAI GTCTC 1 cut(s) 91
BstMBI GATC 3 cut(s) 54, 151, 296
BstMWI GCNNNNNNNGC 1 cut(s) 164
BstSFI CTRYAG 1 cut(s) 123
BstV1I GCAGC 2 cut(s) 191, 385
BstX2I RGATCY 2 cut(s) 54, 296
BstYI RGATCY 2 cut(s) 54, 296
BsuRI GGCC 1 cut(s) 340
Cac8I GCNNGC 2 cut(s) 165, 240
CviAII CATG 1 cut(s) 323
DdeI CTNAG 1 cut(s) 140
DpnI GATC 3 cut(s) 56, 153, 298
DpnII GATC 3 cut(s) 54, 151, 296
DraI TTTAAA 1 cut(s) 135
EaeI YGGCCR 1 cut(s) 338
Eam1104I CTCTTC 1 cut(s) 352
EarI CTCTTC 1 cut(s) 352
Ecl136II GAGCTC 1 cut(s) 387
Eco24I GRGCYC 1 cut(s) 389
Eco31I GGTCTC 1 cut(s) 91
Eco53kI GAGCTC 1 cut(s) 387
EcoICRI GAGCTC 1 cut(s) 387
EcoT38I GRGCYC 1 cut(s) 389
FaeI CATG 1 cut(s) 326
FaiI YATR 4 cut(s) 29, 324, 380, 408
FatI CATG 1 cut(s) 322
FblI GTMKAC 1 cut(s) 126
Fnu4HI GCNGC 2 cut(s) 205, 374
FriOI GRGCYC 1 cut(s) 389
Fsp4HI GCNGC 2 cut(s) 205, 374
GluI GCNGC 2 cut(s) 205, 374
HaeIII GGCC 1 cut(s) 340
HapII CCGG 1 cut(s) 353
Hin1II CATG 1 cut(s) 326
HindIII AAGCTT 1 cut(s) 416
HinfI GANTC 2 cut(s) 92, 356
HpaII CCGG 1 cut(s) 353
HphI GGTGA 2 cut(s) 67, 342
Hpy166II GTNNAC 1 cut(s) 127
Hpy188I TCNGA 5 cut(s) 91, 143, 151, 201, 224
Hpy188III TCNNGA 1 cut(s) 173
Hpy8I GTNNAC 1 cut(s) 127
HpyAV CCTTC 1 cut(s) 82
HpyCH4V TGCA 3 cut(s) 52, 207, 238
HpyF10VI GCNNNNNNNGC 1 cut(s) 164
HpyF3I CTNAG 1 cut(s) 140
Hsp92II CATG 1 cut(s) 326
Kzo9I GATC 3 cut(s) 54, 151, 296
LguI GCTCTTC 1 cut(s) 352
LmnI GCTCC 4 cut(s) 152, 160, 384, 392
LpnPI CCDG 5 cut(s) 135, 153, 158, 322, 366
Lsp1109I GCAGC 2 cut(s) 191, 385
MalI GATC 3 cut(s) 56, 153, 298
MboI GATC 3 cut(s) 54, 151, 296
MboII GAAGA 3 cut(s) 107, 110, 339
MflI RGATCY 2 cut(s) 54, 296
MhlI GDGCHC 1 cut(s) 389
MlsI TGGCCA 1 cut(s) 340
MluCI AATT 3 cut(s) 278, 360, 410
MluNI TGGCCA 1 cut(s) 340
MmeI TCCRAC 1 cut(s) 247
MnlI CCTC 7 cut(s) 43, 76, 79, 88, 207, 263, 287
Mox20I TGGCCA 1 cut(s) 340
MroXI GAANNNNTTC 1 cut(s) 360
MscI TGGCCA 1 cut(s) 340
MseI TTAA 2 cut(s) 134, 368
Msp20I TGGCCA 1 cut(s) 340
MspI CCGG 1 cut(s) 353
MwoI GCNNNNNNNGC 1 cut(s) 164
NdeII GATC 3 cut(s) 54, 151, 296
NlaIII CATG 1 cut(s) 326
NspV TTCGAA 1 cut(s) 283
PciSI GCTCTTC 1 cut(s) 352
PdmI GAANNNNTTC 1 cut(s) 360
PfeI GAWTC 2 cut(s) 92, 356
PkrI GCNGC 2 cut(s) 206, 375
Psp124BI GAGCTC 1 cut(s) 389
PsuI RGATCY 2 cut(s) 54, 296
SacI GAGCTC 1 cut(s) 389
SapI GCTCTTC 1 cut(s) 352
SaqAI TTAA 2 cut(s) 134, 368
SatI GCNGC 2 cut(s) 205, 374
Sau3AI GATC 3 cut(s) 54, 151, 296
SduI GDGCHC 1 cut(s) 389
SfcI CTRYAG 1 cut(s) 123
SfuI TTCGAA 1 cut(s) 283
SmlI CTYRAG 1 cut(s) 243
SmoI CTYRAG 1 cut(s) 243
Sse9I AATT 3 cut(s) 278, 360, 410
SsiI CCGC 1 cut(s) 158
SstI GAGCTC 1 cut(s) 389
TaqI TCGA 1 cut(s) 283
TasI AATT 3 cut(s) 278, 360, 410
TfiI GAWTC 2 cut(s) 92, 356
Tru1I TTAA 2 cut(s) 134, 368
Tru9I TTAA 2 cut(s) 134, 368
TseI GCWGC 2 cut(s) 204, 373
TspDTI ATGAA 2 cut(s) 94, 311
XmiI GTMKAC 1 cut(s) 126
XmnI GAANNNNTTC 1 cut(s) 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.