Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0034548

Physical Location & Seq

Genomic Coordinates Forward (+)

57622224 .. 57625057

Gene Structure 2834 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG344500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGAGGGAGAAGGTTGATACTTGTTCTCCCGTTGGAGTTCTTGAGGACTTCTTTAGGAGCTCAGATTCTGAAAGCTCTACCAAAGAGCCCAATCTGGACTTTGAAATCACCCAAAAATCAAAGGCAAATTCCAGGTGGAATGGACTTGTTCAATTGCTGAGAACAAAATCCAAGAGGTCTTTGGCCTCAATGCATCCTCTGTTGAAACTCTCAAAGAAAATGAGCAGTAGTATGAGGGAGATTATAACGCCAAAACTCGAGTCAGATTCCGAATACCCTTTCAAGTCACCATGGAAGAACTTCTCCCTTCATGAGCTCCAAGCTGCAACAAAGAATTTCAGCCAAGAAAATATGATCGGAAAAGGGGGTTATGCTGAAGTTTACAAGGGTTGTTTAGCAAATGGGCAATTTGTGGCAATCAAACGGCTAACCAGGGGAACGCCGGAGGAGATCACCGGCGACTTTTTATCGGAGATTGGAATCATGGGACATGTGAATCATCCTAATACTGCAAAGTTGATTGGTTATGGAGTTGAAGGAGGGATGCACTTGGTTCTTGAATTGTCTCCACAAGGAAGCTTAGCTTCTGTGCTTTATGGTTCAAAGGTGAAGCTTAAGTGGGAGGTCAGGTACAAAATTGCATTAGGTGCAGCTAAGGGTTTACAGTATCTTCATGAGGGTTGTCAGAGGAGGATTATCCACAGAGATATTAAGGCTGCAAATATTTTGCTCACTGAGGAATTCGAGGCCAAGGTACCCCTTTTGAACTTTATACTCTGTAGCTTGAAAATAATTTTGAATGCCTTTGTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051020 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

271

Amino Acids

30.31

Weight (kDa)

9.21

Isoelectric Point (pI)

46.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	114 - 251	6.4e-23	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	115 - 252	2.3e-25	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0034548)

Species	Orthologous Gene IDs
rosa_samantha	Rh6BG344500 Rh6CG351500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	245
Acc65I	GGTACC	1 cut(s)	754
AccB1I	GGYRCC	1 cut(s)	754
AcsI	RAATTY	3 cut(s)	127, 334, 740
AcuI	CTGAAG	1 cut(s)	396
AfaI	GTAC	2 cut(s)	632, 756
AflII	CTTAAG	1 cut(s)	614
AflIII	ACRYGT	1 cut(s)	490
AjnI	CCWGG	2 cut(s)	131, 431
AluBI	AGCT	9 cut(s)	60, 75, 316, 323, 579, 584, 613, 653, 783
AluI	AGCT	9 cut(s)	60, 75, 316, 323, 579, 584, 613, 653, 783
Alw21I	GWGCWC	2 cut(s)	62, 318
Alw26I	GTCTC	1 cut(s)	570
AlwNI	CAGNNNCTG	1 cut(s)	68
Ama87I	CYCGRG	1 cut(s)	257
AoxI	GGCC	2 cut(s)	183, 747
ApeKI	GCWGC	3 cut(s)	323, 650, 716
ApoI	RAATTY	3 cut(s)	127, 334, 740
ArsI	GACNNNNNNTTYG	2 cut(s)	245, 277
Asp700I	GAANNNNTTC	1 cut(s)	299
Asp718I	GGTACC	1 cut(s)	754
AsuHPI	GGTGA	4 cut(s)	100, 279, 445, 619
AvaI	CYCGRG	1 cut(s)	257
BanI	GGYRCC	1 cut(s)	754
BanII	GRGCYC	3 cut(s)	62, 90, 318
Bbv12I	GWGCWC	2 cut(s)	62, 318
BbvI	GCAGC	3 cut(s)	310, 662, 703
BceAI	ACGGC	1 cut(s)	440
BciT130I	CCWGG	2 cut(s)	133, 433
BcoDI	GTCTC	1 cut(s)	570
BfmI	CTRYAG	1 cut(s)	778
BfrI	CTTAAG	1 cut(s)	614
BisI	GCNGC	3 cut(s)	324, 651, 717
BlpI	GCTNAGC	1 cut(s)	580
BlsI	GCNGC	3 cut(s)	325, 652, 718
Bme1390I	CCNGG	2 cut(s)	133, 433
BmeT110I	CYCGRG	1 cut(s)	257
BmiI	GGNNCC	1 cut(s)	756
BmrFI	CCNGG	2 cut(s)	133, 433
BmsI	GCATC	2 cut(s)	202, 534
Bpu10I	CCTNAGC	1 cut(s)	654
Bpu1102I	GCTNAGC	1 cut(s)	580
BpuEI	CTTGAG	1 cut(s)	62
BsaBI	GATNNNNATC	1 cut(s)	479
BsaJI	CCNNGG	3 cut(s)	290, 432, 750
BsaXI	ACNNNNNCTCC	4 cut(s)	10, 40, 614, 644
Bse118I	RCCGGY	1 cut(s)	455
Bse8I	GATNNNNATC	1 cut(s)	479
BseBI	CCWGG	2 cut(s)	133, 433
BseDI	CCNNGG	3 cut(s)	290, 432, 750
BseGI	GGATG	3 cut(s)	193, 499, 549
BseJI	GATNNNNATC	1 cut(s)	479
BseMII	CTCAG	3 cut(s)	75, 149, 726
BseRI	GAGGAG	2 cut(s)	461, 703
BseXI	GCAGC	3 cut(s)	310, 662, 703
BsgI	GTGCAG	1 cut(s)	669
BshFI	GGCC	2 cut(s)	185, 749
BshNI	GGYRCC	1 cut(s)	754
BsiHKAI	GWGCWC	2 cut(s)	62, 318
BsiHKCI	CYCGRG	1 cut(s)	257
BsiSI	CCGG	2 cut(s)	443, 456
BslFI	GGGAC	1 cut(s)	501
BsmAI	GTCTC	1 cut(s)	570
BsmFI	GGGAC	1 cut(s)	501
BsmI	GAATGC	1 cut(s)	805
BsnI	GGCC	2 cut(s)	185, 749
BsoBI	CYCGRG	1 cut(s)	257
Bsp1286I	GDGCHC	3 cut(s)	62, 90, 318
Bsp143I	GATC	2 cut(s)	354, 450
Bsp1720I	GCTNAGC	1 cut(s)	580
Bsp19I	CCATGG	1 cut(s)	290
BspANI	GGCC	2 cut(s)	185, 749
BspCNI	CTCAG	3 cut(s)	74, 150, 727
BspHI	TCATGA	2 cut(s)	310, 673
BspLI	GGNNCC	1 cut(s)	756
BspT107I	GGYRCC	1 cut(s)	754
BspTI	CTTAAG	1 cut(s)	614
BsrFI	RCCGGY	1 cut(s)	455
BssAI	RCCGGY	1 cut(s)	455
BssECI	CCNNGG	3 cut(s)	290, 432, 750
BssMI	GATC	2 cut(s)	354, 450
BssT1I	CCWWGG	2 cut(s)	290, 750
Bst2UI	CCWGG	2 cut(s)	133, 433
Bst4CI	ACNGT	1 cut(s)	666
BstAFI	CTTAAG	1 cut(s)	614
BstAPI	GCANNNNNTGC	1 cut(s)	647
BstDEI	CTNAG	5 cut(s)	61, 158, 580, 654, 735
BstDSI	CCRYGG	1 cut(s)	290
BstF5I	GGATG	3 cut(s)	193, 499, 549
BstKTI	GATC	2 cut(s)	357, 453
BstMAI	GTCTC	1 cut(s)	570
BstMBI	GATC	2 cut(s)	354, 450
BstMWI	GCNNNNNNNGC	1 cut(s)	647
BstNI	CCWGG	2 cut(s)	133, 433
BstNSI	RCATGY	1 cut(s)	494
BstSCI	CCNGG	2 cut(s)	131, 431
BstSFI	CTRYAG	1 cut(s)	778
BstV1I	GCAGC	3 cut(s)	310, 662, 703
BsuRI	GGCC	2 cut(s)	185, 749
BtgI	CCRYGG	1 cut(s)	290
BtsCI	GGATG	3 cut(s)	193, 499, 549
BtsIMutI	CAGTG	1 cut(s)	732
CaiI	CAGNNNCTG	1 cut(s)	68
CciI	TCATGA	2 cut(s)	310, 673
Cfr10I	RCCGGY	1 cut(s)	455
Csp6I	GTAC	2 cut(s)	631, 755
CviAII	CATG	5 cut(s)	291, 311, 484, 491, 674
CviQI	GTAC	2 cut(s)	631, 755
DdeI	CTNAG	5 cut(s)	61, 158, 580, 654, 735
DpnI	GATC	2 cut(s)	356, 452
DpnII	GATC	2 cut(s)	354, 450
Ecl136II	GAGCTC	2 cut(s)	60, 316
Eco130I	CCWWGG	2 cut(s)	290, 750
Eco24I	GRGCYC	3 cut(s)	62, 90, 318
Eco53kI	GAGCTC	2 cut(s)	60, 316
Eco57I	CTGAAG	1 cut(s)	396
Eco88I	CYCGRG	1 cut(s)	257
EcoICRI	GAGCTC	2 cut(s)	60, 316
EcoRI	GAATTC	1 cut(s)	740
EcoRII	CCWGG	2 cut(s)	131, 431
EcoT14I	CCWWGG	2 cut(s)	290, 750
EcoT22I	ATGCAT	1 cut(s)	195
EcoT38I	GRGCYC	3 cut(s)	62, 90, 318
ErhI	CCWWGG	2 cut(s)	290, 750
FaeI	CATG	5 cut(s)	294, 314, 487, 494, 677
FalI	AAGNNNNNCTT	2 cut(s)	568, 600
FaqI	GGGAC	1 cut(s)	501
FatI	CATG	5 cut(s)	290, 310, 483, 490, 673
Fnu4HI	GCNGC	3 cut(s)	324, 651, 717
FokI	GGATG	3 cut(s)	180, 486, 556
FriOI	GRGCYC	3 cut(s)	62, 90, 318
Fsp4HI	GCNGC	3 cut(s)	324, 651, 717
GluI	GCNGC	3 cut(s)	324, 651, 717
HaeIII	GGCC	2 cut(s)	185, 749
HapII	CCGG	2 cut(s)	443, 456
Hin1II	CATG	5 cut(s)	294, 314, 487, 494, 677
HindIII	AAGCTT	2 cut(s)	577, 611
HinfI	GANTC	5 cut(s)	65, 260, 266, 480, 496
HpaII	CCGG	2 cut(s)	443, 456
HphI	GGTGA	4 cut(s)	100, 279, 445, 619
Hpy166II	GTNNAC	2 cut(s)	382, 662
Hpy188I	TCNGA	7 cut(s)	64, 70, 265, 271, 359, 472, 687
Hpy188III	TCNNGA	5 cut(s)	41, 95, 311, 557, 674
Hpy8I	GTNNAC	2 cut(s)	382, 662
HpyAV	CCTTC	3 cut(s)	4, 317, 530
HpyCH4III	ACNGT	1 cut(s)	666
HpyCH4V	TGCA	7 cut(s)	193, 326, 512, 547, 641, 650, 719
HpyF10VI	GCNNNNNNNGC	1 cut(s)	647
HpyF3I	CTNAG	5 cut(s)	61, 158, 580, 654, 735
Hsp92II	CATG	5 cut(s)	294, 314, 487, 494, 677
KpnI	GGTACC	1 cut(s)	758
Kzo9I	GATC	2 cut(s)	354, 450
LmnI	GCTCC	2 cut(s)	57, 321
LpnPI	CCDG	8 cut(s)	80, 118, 145, 418, 445, 456, 469, 613
Lsp1109I	GCAGC	3 cut(s)	310, 662, 703
LweI	GCATC	2 cut(s)	202, 534
MaeIII	GTNAC	1 cut(s)	285
MalI	GATC	2 cut(s)	356, 452
MboI	GATC	2 cut(s)	354, 450
MboII	GAAGA	2 cut(s)	307, 662
MfeI	CAATTG	1 cut(s)	152
MhlI	GDGCHC	3 cut(s)	62, 90, 318
MluCI	AATT	8 cut(s)	127, 152, 334, 407, 560, 636, 740, 792
MlyI	GAGTC	1 cut(s)	269
MmeI	TCCRAC	1 cut(s)	13
Mph1103I	ATGCAT	1 cut(s)	195
MroXI	GAANNNNTTC	1 cut(s)	299
MseI	TTAA	2 cut(s)	615, 711
MspCI	CTTAAG	1 cut(s)	614
MspI	CCGG	2 cut(s)	443, 456
MspR9I	CCNGG	2 cut(s)	133, 433
MunI	CAATTG	1 cut(s)	152
Mva1269I	GAATGC	1 cut(s)	805
MvaI	CCWGG	2 cut(s)	133, 433
MwoI	GCNNNNNNNGC	1 cut(s)	647
NcoI	CCATGG	1 cut(s)	290
NdeII	GATC	2 cut(s)	354, 450
NlaIII	CATG	5 cut(s)	294, 314, 487, 494, 677
NlaIV	GGNNCC	1 cut(s)	756
NmuCI	GTSAC	1 cut(s)	285
NsiI	ATGCAT	1 cut(s)	195
NspI	RCATGY	1 cut(s)	494
PaeR7I	CTCGAG	1 cut(s)	257
PagI	TCATGA	2 cut(s)	310, 673
PciI	ACATGT	1 cut(s)	490
PctI	GAATGC	1 cut(s)	805
PdmI	GAANNNNTTC	1 cut(s)	299
PfeI	GAWTC	4 cut(s)	65, 266, 480, 496
PkrI	GCNGC	3 cut(s)	325, 652, 718
PleI	GAGTC	1 cut(s)	268
PpsI	GAGTC	1 cut(s)	268
PscI	ACATGT	1 cut(s)	490
PsiI	TTATAA	1 cut(s)	245
Psp124BI	GAGCTC	2 cut(s)	62, 318
Psp6I	CCWGG	2 cut(s)	131, 431
PspGI	CCWGG	2 cut(s)	131, 431
PspN4I	GGNNCC	1 cut(s)	756
PspXI	VCTCGAGB	1 cut(s)	257
PstNI	CAGNNNCTG	1 cut(s)	68
RsaI	GTAC	2 cut(s)	632, 756
RsaNI	GTAC	2 cut(s)	631, 755
SacI	GAGCTC	2 cut(s)	62, 318
SaqAI	TTAA	2 cut(s)	615, 711
SatI	GCNGC	3 cut(s)	324, 651, 717
Sau3AI	GATC	2 cut(s)	354, 450
SchI	GAGTC	1 cut(s)	269
ScrFI	CCNGG	2 cut(s)	133, 433
SduI	GDGCHC	3 cut(s)	62, 90, 318
SfaNI	GCATC	2 cut(s)	202, 534
SfcI	CTRYAG	1 cut(s)	778
Sfr274I	CTCGAG	1 cut(s)	257
SgrAI	CRCCGGYG	1 cut(s)	455
SlaI	CTCGAG	1 cut(s)	257
SmlI	CTYRAG	3 cut(s)	41, 257, 614
SmoI	CTYRAG	3 cut(s)	41, 257, 614
Sse9I	AATT	8 cut(s)	127, 152, 334, 407, 560, 636, 740, 792
SspI	AATATT	1 cut(s)	724
SstI	GAGCTC	2 cut(s)	62, 318
StyD4I	CCNGG	2 cut(s)	131, 431
StyI	CCWWGG	2 cut(s)	290, 750
TaaI	ACNGT	1 cut(s)	666
TaqI	TCGA	2 cut(s)	258, 744
TasI	AATT	8 cut(s)	127, 152, 334, 407, 560, 636, 740, 792
TfiI	GAWTC	4 cut(s)	65, 266, 480, 496
Tru1I	TTAA	2 cut(s)	615, 711
Tru9I	TTAA	2 cut(s)	615, 711
TscAI	CASTG	1 cut(s)	739
TseFI	GTSAC	1 cut(s)	285
TseI	GCWGC	3 cut(s)	323, 650, 716
Tsp45I	GTSAC	1 cut(s)	285
TspDTI	ATGAA	2 cut(s)	299, 662
TspRI	CASTG	1 cut(s)	739
Vha464I	CTTAAG	1 cut(s)	614
XapI	RAATTY	3 cut(s)	127, 334, 740
XceI	RCATGY	1 cut(s)	494
XcmI	CCANNNNNNNNNTGG	1 cut(s)	178
XhoI	CTCGAG	1 cut(s)	257
XmnI	GAANNNNTTC	1 cut(s)	299
Zsp2I	ATGCAT	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.