Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0034548

Physical Location & Seq

Genomic Coordinates Forward (+)

54090034 .. 54090741

Gene Structure 708 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG351500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGAGGGAGAAGGTTGATACTTGTTCTCCCGTTGGAGTTCTTGAGGACTTCTTTAGGAGCTCAGATTCTGAAAGCTCTACCAAGGAGCCCAATCTGGACTTTGAAATCACCCAAAAATCAAAGGCAAATTCCAGGTGGTATGGACTTGTTCAATTGCTGAGAACAAAATCCAAGAGGTCTTTGGCCCCAATGCATCCTCTGTGGAAACTCTCAAAGAAAATGAGCAGTAGTATGAGGGAGATTATAACGCCAAAACTCGAGTCAGATTCCGAATACCCTTTCAAGTCACCATGGAAGAACTTCTCCCTTCATGAGCTCCAAGCTGCAACAAAGAATTTCAGCCAAGAAAATATGATCGGAAAAGGGGGTTATGCTGAGGTTTACAAGGGTTGTTTATCAAATGGGCAATTTGTGGCAATCAAACGGCTAACCAGGGGAACGCCGGAGGAGATCACCGGCGACTTTTTATCGGAGATTGGAATCATGGGACATGTGAATCATCCCAATACTGCAAAGTTGATTGGTTATGGAGTTGAAGGAGGGATGCACTTGGTTCTTGAATTGTCTCCACAAGGAAGCTTAGCTTCTGTGCTTTATGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051020 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

200

Amino Acids

22.29

Weight (kDa)

8.77

Isoelectric Point (pI)

53.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	114 - 198	4.6e-10	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	115 - 198	5.7e-12	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0034548)

Species	Orthologous Gene IDs
rosa_samantha	Rh6BG344500 Rh6CG351500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	245
AcsI	RAATTY	2 cut(s)	127, 334
AflIII	ACRYGT	1 cut(s)	490
AgsI	TTSAA	5 cut(s)	104, 152, 283, 536, 560
AjnI	CCWGG	2 cut(s)	131, 431
AluBI	AGCT	6 cut(s)	60, 75, 316, 323, 579, 584
AluI	AGCT	6 cut(s)	60, 75, 316, 323, 579, 584
Alw21I	GWGCWC	2 cut(s)	62, 318
Alw26I	GTCTC	1 cut(s)	570
AlwNI	CAGNNNCTG	1 cut(s)	68
Ama87I	CYCGRG	1 cut(s)	257
AoxI	GGCC	1 cut(s)	183
ApeKI	GCWGC	1 cut(s)	323
ApoI	RAATTY	2 cut(s)	127, 334
ArsI	GACNNNNNNTTYG	2 cut(s)	245, 277
Asp700I	GAANNNNTTC	1 cut(s)	299
AspS9I	GGNCC	1 cut(s)	184
AsuHPI	GGTGA	3 cut(s)	100, 279, 445
AvaI	CYCGRG	1 cut(s)	257
BanII	GRGCYC	3 cut(s)	62, 90, 318
Bbv12I	GWGCWC	2 cut(s)	62, 318
BbvCI	CCTCAGC	1 cut(s)	375
BbvI	GCAGC	1 cut(s)	310
BceAI	ACGGC	1 cut(s)	440
BciT130I	CCWGG	2 cut(s)	133, 433
BcoDI	GTCTC	1 cut(s)	570
BisI	GCNGC	1 cut(s)	324
BlpI	GCTNAGC	1 cut(s)	580
BlsI	GCNGC	1 cut(s)	325
Bme1390I	CCNGG	2 cut(s)	133, 433
BmeT110I	CYCGRG	1 cut(s)	257
BmgT120I	GGNCC	1 cut(s)	184
BmiI	GGNNCC	2 cut(s)	87, 186
BmrFI	CCNGG	2 cut(s)	133, 433
BmsI	GCATC	2 cut(s)	202, 534
Bpu10I	CCTNAGC	1 cut(s)	375
Bpu1102I	GCTNAGC	1 cut(s)	580
BpuEI	CTTGAG	1 cut(s)	62
BsaBI	GATNNNNATC	1 cut(s)	479
BsaJI	CCNNGG	3 cut(s)	81, 290, 432
BsaXI	ACNNNNNCTCC	2 cut(s)	10, 40
Bse118I	RCCGGY	1 cut(s)	455
Bse8I	GATNNNNATC	1 cut(s)	479
BseBI	CCWGG	2 cut(s)	133, 433
BseDI	CCNNGG	3 cut(s)	81, 290, 432
BseGI	GGATG	3 cut(s)	193, 499, 549
BseJI	GATNNNNATC	1 cut(s)	479
BseMII	CTCAG	3 cut(s)	75, 149, 366
BseRI	GAGGAG	1 cut(s)	461
BseXI	GCAGC	1 cut(s)	310
BshFI	GGCC	1 cut(s)	185
BsiHKAI	GWGCWC	2 cut(s)	62, 318
BsiHKCI	CYCGRG	1 cut(s)	257
BsiSI	CCGG	2 cut(s)	443, 456
BslFI	GGGAC	1 cut(s)	501
BsmAI	GTCTC	1 cut(s)	570
BsmFI	GGGAC	1 cut(s)	501
BsnI	GGCC	1 cut(s)	185
BsoBI	CYCGRG	1 cut(s)	257
Bsp1286I	GDGCHC	3 cut(s)	62, 90, 318
Bsp143I	GATC	2 cut(s)	354, 450
Bsp1720I	GCTNAGC	1 cut(s)	580
Bsp19I	CCATGG	1 cut(s)	290
BspANI	GGCC	1 cut(s)	185
BspCNI	CTCAG	3 cut(s)	74, 150, 367
BspHI	TCATGA	1 cut(s)	310
BspLI	GGNNCC	2 cut(s)	87, 186
BsrFI	RCCGGY	1 cut(s)	455
BssAI	RCCGGY	1 cut(s)	455
BssECI	CCNNGG	3 cut(s)	81, 290, 432
BssMI	GATC	2 cut(s)	354, 450
BssT1I	CCWWGG	2 cut(s)	81, 290
Bst2UI	CCWGG	2 cut(s)	133, 433
BstDEI	CTNAG	4 cut(s)	61, 158, 375, 580
BstDSI	CCRYGG	1 cut(s)	290
BstF5I	GGATG	3 cut(s)	193, 499, 549
BstKTI	GATC	2 cut(s)	357, 453
BstMAI	GTCTC	1 cut(s)	570
BstMBI	GATC	2 cut(s)	354, 450
BstNI	CCWGG	2 cut(s)	133, 433
BstNSI	RCATGY	1 cut(s)	494
BstSCI	CCNGG	2 cut(s)	131, 431
BstV1I	GCAGC	1 cut(s)	310
BsuRI	GGCC	1 cut(s)	185
BtgI	CCRYGG	1 cut(s)	290
BtsCI	GGATG	3 cut(s)	193, 499, 549
CaiI	CAGNNNCTG	1 cut(s)	68
CciI	TCATGA	1 cut(s)	310
Cfr10I	RCCGGY	1 cut(s)	455
Cfr13I	GGNCC	1 cut(s)	184
CviAII	CATG	4 cut(s)	291, 311, 484, 491
DdeI	CTNAG	4 cut(s)	61, 158, 375, 580
DpnI	GATC	2 cut(s)	356, 452
DpnII	GATC	2 cut(s)	354, 450
Ecl136II	GAGCTC	2 cut(s)	60, 316
Eco130I	CCWWGG	2 cut(s)	81, 290
Eco24I	GRGCYC	3 cut(s)	62, 90, 318
Eco53kI	GAGCTC	2 cut(s)	60, 316
Eco88I	CYCGRG	1 cut(s)	257
EcoICRI	GAGCTC	2 cut(s)	60, 316
EcoRII	CCWGG	2 cut(s)	131, 431
EcoT14I	CCWWGG	2 cut(s)	81, 290
EcoT22I	ATGCAT	1 cut(s)	195
EcoT38I	GRGCYC	3 cut(s)	62, 90, 318
ErhI	CCWWGG	2 cut(s)	81, 290
FaeI	CATG	4 cut(s)	294, 314, 487, 494
FalI	AAGNNNNNCTT	2 cut(s)	568, 600
FaqI	GGGAC	1 cut(s)	501
FatI	CATG	4 cut(s)	290, 310, 483, 490
Fnu4HI	GCNGC	1 cut(s)	324
FokI	GGATG	3 cut(s)	180, 486, 556
FriOI	GRGCYC	3 cut(s)	62, 90, 318
Fsp4HI	GCNGC	1 cut(s)	324
GluI	GCNGC	1 cut(s)	324
HaeIII	GGCC	1 cut(s)	185
HapII	CCGG	2 cut(s)	443, 456
Hin1II	CATG	4 cut(s)	294, 314, 487, 494
HindIII	AAGCTT	1 cut(s)	577
HinfI	GANTC	5 cut(s)	65, 260, 266, 480, 496
HpaII	CCGG	2 cut(s)	443, 456
HphI	GGTGA	3 cut(s)	100, 279, 445
Hpy166II	GTNNAC	1 cut(s)	382
Hpy188I	TCNGA	6 cut(s)	64, 70, 265, 271, 359, 472
Hpy188III	TCNNGA	4 cut(s)	41, 95, 311, 557
Hpy8I	GTNNAC	1 cut(s)	382
HpyAV	CCTTC	3 cut(s)	4, 317, 530
HpyCH4V	TGCA	4 cut(s)	193, 326, 512, 547
HpyF3I	CTNAG	4 cut(s)	61, 158, 375, 580
Hsp92II	CATG	4 cut(s)	294, 314, 487, 494
Kzo9I	GATC	2 cut(s)	354, 450
LmnI	GCTCC	3 cut(s)	57, 85, 321
LpnPI	CCDG	7 cut(s)	80, 118, 145, 418, 445, 456, 469
Lsp1109I	GCAGC	1 cut(s)	310
LweI	GCATC	2 cut(s)	202, 534
MaeIII	GTNAC	1 cut(s)	285
MalI	GATC	2 cut(s)	356, 452
MboI	GATC	2 cut(s)	354, 450
MboII	GAAGA	1 cut(s)	307
MfeI	CAATTG	1 cut(s)	152
MhlI	GDGCHC	3 cut(s)	62, 90, 318
MluCI	AATT	5 cut(s)	127, 152, 334, 407, 560
MlyI	GAGTC	1 cut(s)	269
MmeI	TCCRAC	1 cut(s)	13
MnlI	CCTC	7 cut(s)	37, 168, 207, 228, 370, 439, 533
Mph1103I	ATGCAT	1 cut(s)	195
MroXI	GAANNNNTTC	1 cut(s)	299
MspI	CCGG	2 cut(s)	443, 456
MspR9I	CCNGG	2 cut(s)	133, 433
MunI	CAATTG	1 cut(s)	152
MvaI	CCWGG	2 cut(s)	133, 433
NcoI	CCATGG	1 cut(s)	290
NdeII	GATC	2 cut(s)	354, 450
NlaIII	CATG	4 cut(s)	294, 314, 487, 494
NlaIV	GGNNCC	2 cut(s)	87, 186
NmuCI	GTSAC	1 cut(s)	285
NsiI	ATGCAT	1 cut(s)	195
NspI	RCATGY	1 cut(s)	494
PaeR7I	CTCGAG	1 cut(s)	257
PagI	TCATGA	1 cut(s)	310
PciI	ACATGT	1 cut(s)	490
PdmI	GAANNNNTTC	1 cut(s)	299
PfeI	GAWTC	4 cut(s)	65, 266, 480, 496
PkrI	GCNGC	1 cut(s)	325
PleI	GAGTC	1 cut(s)	268
PpsI	GAGTC	1 cut(s)	268
PscI	ACATGT	1 cut(s)	490
PsiI	TTATAA	1 cut(s)	245
Psp124BI	GAGCTC	2 cut(s)	62, 318
Psp6I	CCWGG	2 cut(s)	131, 431
PspGI	CCWGG	2 cut(s)	131, 431
PspN4I	GGNNCC	2 cut(s)	87, 186
PspPI	GGNCC	1 cut(s)	184
PspXI	VCTCGAGB	1 cut(s)	257
PstNI	CAGNNNCTG	1 cut(s)	68
SacI	GAGCTC	2 cut(s)	62, 318
SatI	GCNGC	1 cut(s)	324
Sau3AI	GATC	2 cut(s)	354, 450
Sau96I	GGNCC	1 cut(s)	184
SchI	GAGTC	1 cut(s)	269
ScrFI	CCNGG	2 cut(s)	133, 433
SduI	GDGCHC	3 cut(s)	62, 90, 318
SfaNI	GCATC	2 cut(s)	202, 534
Sfr274I	CTCGAG	1 cut(s)	257
SgrAI	CRCCGGYG	1 cut(s)	455
SlaI	CTCGAG	1 cut(s)	257
SmlI	CTYRAG	2 cut(s)	41, 257
SmoI	CTYRAG	2 cut(s)	41, 257
Sse9I	AATT	5 cut(s)	127, 152, 334, 407, 560
SstI	GAGCTC	2 cut(s)	62, 318
StyD4I	CCNGG	2 cut(s)	131, 431
StyI	CCWWGG	2 cut(s)	81, 290
TaqI	TCGA	1 cut(s)	258
TasI	AATT	5 cut(s)	127, 152, 334, 407, 560
TfiI	GAWTC	4 cut(s)	65, 266, 480, 496
TseFI	GTSAC	1 cut(s)	285
TseI	GCWGC	1 cut(s)	323
Tsp45I	GTSAC	1 cut(s)	285
TspDTI	ATGAA	1 cut(s)	299
XapI	RAATTY	2 cut(s)	127, 334
XceI	RCATGY	1 cut(s)	494
XcmI	CCANNNNNNNNNTGG	1 cut(s)	178
XhoI	CTCGAG	1 cut(s)	257
XmnI	GAANNNNTTC	1 cut(s)	299
Zsp2I	ATGCAT	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.