Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0024921

Physical Location & Seq

Genomic Coordinates Forward (+)

67591248 .. 67591829

Gene Structure 582 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG467500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGGCATGGCAGGCATCTCAATTTTCTTGACATTTGTGGTTCTCTTCCTTACTAGTACTAAAGCTAGCACTGATCAGACGAGCAACAGCAGCCGAGTTTATATTGTGTACATGGGATCTGCAGCTCCAAACTCTTTAACCAGCACTACAGCTTCCTTGAGGACTGACCATGCTCGCCTCCTTACTTCTCTGTCGAGACGGAAAGCAAATGCGTTGGTGCACATTTACAGGCATGGTTTCGCAGGATTCGCGGCTCGGCTATCAGAGGAGGAGGCACAGTCGATGGCTCAAAAACCTGGAGTTATATCTGTTTTTCCTGATCACTTACTGAAACTCCACACCACTCATTCCTGGGATTTCCTCAAGTATCAGACTGAGTTAGAAATCGACTCATTTCCTAACAGCATCTCCGAGAATGATGATGGTGCTGCTGATGACACAGCACCGGACTCTAATGGATCTGACACCATTATCGGCATTTTAGACACAGGTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002832 GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0010033 GO:0010037 GO:0016787 GO:0017171 GO:0019538 GO:0030312 GO:0031347 GO:0031348 GO:0032101 GO:0032102 GO:0042221 GO:0042493 GO:0043170 GO:0043900 GO:0043901 GO:0044238 GO:0044464 GO:0048046 GO:0048519 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:0070011 GO:0071704 GO:0071944 GO:0072347 GO:0080134 GO:0140096 GO:1900424 GO:1900425 GO:1901564 GO:1901700 GO:2000026 GO:2000038 GO:2000122

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

165

Amino Acids

17.86

Weight (kDa)

5.21

Isoelectric Point (pI)

33.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I9	PF05922	33 - 113	3.5e-19	Peptidase inhibitor I9

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0024921)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0451691
rosa_samantha	Rh6BG467500 Rh6CG448000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	251
AciI	CCGC	1 cut(s)	251
AclWI	GGATC	2 cut(s)	124, 466
AfaI	GTAC	2 cut(s)	58, 110
AhlI	ACTAGT	1 cut(s)	53
AjnI	CCWGG	2 cut(s)	295, 350
AluBI	AGCT	3 cut(s)	65, 125, 152
AluI	AGCT	3 cut(s)	65, 125, 152
Alw21I	GWGCWC	1 cut(s)	222
Alw26I	GTCTC	1 cut(s)	190
Alw44I	GTGCAC	1 cut(s)	218
AlwI	GGATC	2 cut(s)	124, 466
ApaLI	GTGCAC	1 cut(s)	218
ApeKI	GCWGC	3 cut(s)	90, 122, 428
AsuNHI	GCTAGC	1 cut(s)	65
BaeGI	GKGCMC	1 cut(s)	222
Bbv12I	GWGCWC	1 cut(s)	222
BbvI	GCAGC	3 cut(s)	102, 134, 415
BccI	CCATC	2 cut(s)	277, 416
BciT130I	CCWGG	2 cut(s)	297, 352
BclI	TGATCA	2 cut(s)	73, 319
BcoDI	GTCTC	1 cut(s)	190
BcuI	ACTAGT	1 cut(s)	53
BfaI	CTAG	2 cut(s)	54, 66
BfmI	CTRYAG	2 cut(s)	120, 147
BisI	GCNGC	4 cut(s)	91, 123, 252, 429
BlsI	GCNGC	4 cut(s)	92, 124, 253, 430
BmcAI	AGTACT	1 cut(s)	58
Bme1390I	CCNGG	2 cut(s)	297, 352
BmrFI	CCNGG	2 cut(s)	297, 352
BmsI	GCATC	2 cut(s)	24, 414
BmtI	GCTAGC	1 cut(s)	69
BpmI	CTGGAG	1 cut(s)	318
BpuEI	CTTGAG	2 cut(s)	178, 347
BsaJI	CCNNGG	1 cut(s)	351
BsaWI	WCCGGW	1 cut(s)	445
BsaXI	ACNNNNNCTCC	6 cut(s)	263, 293, 318, 348, 392, 422
BseBI	CCWGG	2 cut(s)	297, 352
BseDI	CCNNGG	1 cut(s)	351
BseMII	CTCAG	1 cut(s)	366
BseRI	GAGGAG	2 cut(s)	281, 284
BseSI	GKGCMC	1 cut(s)	222
BseXI	GCAGC	3 cut(s)	102, 134, 415
Bsh1236I	CGCG	1 cut(s)	251
BsiHKAI	GWGCWC	1 cut(s)	222
BsiSI	CCGG	1 cut(s)	446
BsmAI	GTCTC	1 cut(s)	190
BsmBI	CGTCTC	1 cut(s)	190
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp1407I	TGTACA	1 cut(s)	108
Bsp143I	GATC	4 cut(s)	73, 116, 319, 458
BspACI	CCGC	1 cut(s)	251
BspCNI	CTCAG	1 cut(s)	367
BspFNI	CGCG	1 cut(s)	251
BspMAI	CTGCAG	1 cut(s)	124
BspOI	GCTAGC	1 cut(s)	69
BspPI	GGATC	2 cut(s)	124, 466
BsrGI	TGTACA	1 cut(s)	108
BssECI	CCNNGG	1 cut(s)	351
BssMI	GATC	4 cut(s)	73, 116, 319, 458
Bst2UI	CCWGG	2 cut(s)	297, 352
Bst4CI	ACNGT	1 cut(s)	279
Bst6I	CTCTTC	1 cut(s)	50
BstAUI	TGTACA	1 cut(s)	108
BstC8I	GCNNGC	3 cut(s)	13, 67, 175
BstDEI	CTNAG	1 cut(s)	375
BstFNI	CGCG	1 cut(s)	251
BstKTI	GATC	4 cut(s)	76, 119, 322, 461
BstMAI	GTCTC	1 cut(s)	190
BstMBI	GATC	4 cut(s)	73, 116, 319, 458
BstMWI	GCNNNNNNNGC	3 cut(s)	12, 90, 248
BstNI	CCWGG	2 cut(s)	297, 352
BstSCI	CCNGG	2 cut(s)	295, 350
BstSFI	CTRYAG	2 cut(s)	120, 147
BstSLI	GKGCMC	1 cut(s)	222
BstUI	CGCG	1 cut(s)	251
BstV1I	GCAGC	3 cut(s)	102, 134, 415
BstX2I	RGATCY	2 cut(s)	116, 458
BstYI	RGATCY	2 cut(s)	116, 458
BtsIMutI	CAGTG	1 cut(s)	69
Cac8I	GCNNGC	3 cut(s)	13, 67, 175
Csp6I	GTAC	2 cut(s)	57, 109
CviAII	CATG	4 cut(s)	7, 112, 170, 233
CviJI	RGCY	7 cut(s)	65, 93, 125, 152, 254, 259, 287
CviKI_1	RGCY	7 cut(s)	65, 93, 125, 152, 254, 259, 287
CviQI	GTAC	2 cut(s)	57, 109
DdeI	CTNAG	1 cut(s)	375
DpnI	GATC	4 cut(s)	75, 118, 321, 460
DpnII	GATC	4 cut(s)	73, 116, 319, 458
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
EcoRII	CCWGG	2 cut(s)	295, 350
Esp3I	CGTCTC	1 cut(s)	190
FaeI	CATG	4 cut(s)	10, 115, 173, 236
FaiI	YATR	6 cut(s)	8, 102, 113, 171, 234, 305
FatI	CATG	4 cut(s)	6, 111, 169, 232
FbaI	TGATCA	2 cut(s)	73, 319
Fnu4HI	GCNGC	4 cut(s)	91, 123, 252, 429
Fsp4HI	GCNGC	4 cut(s)	91, 123, 252, 429
FspBI	CTAG	2 cut(s)	54, 66
GluI	GCNGC	4 cut(s)	91, 123, 252, 429
GsuI	CTGGAG	1 cut(s)	318
HapII	CCGG	1 cut(s)	446
Hin1II	CATG	4 cut(s)	10, 115, 173, 236
HinfI	GANTC	3 cut(s)	246, 389, 449
HpaII	CCGG	1 cut(s)	446
Hpy166II	GTNNAC	2 cut(s)	109, 220
Hpy188I	TCNGA	5 cut(s)	78, 265, 372, 412, 463
Hpy188III	TCNNGA	3 cut(s)	28, 195, 317
Hpy8I	GTNNAC	2 cut(s)	109, 220
HpyCH4III	ACNGT	1 cut(s)	279
HpyCH4V	TGCA	2 cut(s)	122, 220
HpyF10VI	GCNNNNNNNGC	3 cut(s)	12, 90, 248
HpyF3I	CTNAG	1 cut(s)	375
Hsp92II	CATG	4 cut(s)	10, 115, 173, 236
Ksp22I	TGATCA	2 cut(s)	73, 319
Kzo9I	GATC	4 cut(s)	73, 116, 319, 458
LmnI	GCTCC	1 cut(s)	130
Lsp1109I	GCAGC	3 cut(s)	102, 134, 415
LweI	GCATC	2 cut(s)	24, 414
MaeI	CTAG	2 cut(s)	54, 66
MalI	GATC	4 cut(s)	75, 118, 321, 460
MboI	GATC	4 cut(s)	73, 116, 319, 458
MboII	GAAGA	1 cut(s)	37
MflI	RGATCY	2 cut(s)	116, 458
MhlI	GDGCHC	1 cut(s)	222
MluCI	AATT	1 cut(s)	21
MlyI	GAGTC	2 cut(s)	383, 443
MnlI	CCTC	6 cut(s)	153, 188, 259, 262, 265, 371
MseI	TTAA	1 cut(s)	137
MspI	CCGG	1 cut(s)	446
MspR9I	CCNGG	2 cut(s)	297, 352
MvaI	CCWGG	2 cut(s)	297, 352
MvnI	CGCG	1 cut(s)	251
MwoI	GCNNNNNNNGC	3 cut(s)	12, 90, 248
NdeII	GATC	4 cut(s)	73, 116, 319, 458
NheI	GCTAGC	1 cut(s)	65
NlaIII	CATG	4 cut(s)	10, 115, 173, 236
NmeAIII	GCCGAG	2 cut(s)	119, 235
PfeI	GAWTC	1 cut(s)	246
PkrI	GCNGC	4 cut(s)	92, 124, 253, 430
PleI	GAGTC	2 cut(s)	383, 443
PpsI	GAGTC	2 cut(s)	383, 443
Psp6I	CCWGG	2 cut(s)	295, 350
PspGI	CCWGG	2 cut(s)	295, 350
PstI	CTGCAG	1 cut(s)	124
PsuI	RGATCY	2 cut(s)	116, 458
RsaI	GTAC	2 cut(s)	58, 110
RsaNI	GTAC	2 cut(s)	57, 109
SaqAI	TTAA	1 cut(s)	137
SatI	GCNGC	4 cut(s)	91, 123, 252, 429
Sau3AI	GATC	4 cut(s)	73, 116, 319, 458
ScaI	AGTACT	1 cut(s)	58
SchI	GAGTC	2 cut(s)	383, 443
ScrFI	CCNGG	2 cut(s)	297, 352
SduI	GDGCHC	1 cut(s)	222
SetI	ASST	5 cut(s)	67, 127, 154, 298, 493
SfaNI	GCATC	2 cut(s)	24, 414
SfcI	CTRYAG	2 cut(s)	120, 147
SmlI	CTYRAG	2 cut(s)	157, 362
SmoI	CTYRAG	2 cut(s)	157, 362
SpeI	ACTAGT	1 cut(s)	53
Sse9I	AATT	1 cut(s)	21
SsiI	CCGC	1 cut(s)	251
SspMI	CTAG	2 cut(s)	54, 66
StyD4I	CCNGG	2 cut(s)	295, 350
TaaI	ACNGT	1 cut(s)	279
TaqI	TCGA	3 cut(s)	194, 281, 387
TasI	AATT	1 cut(s)	21
TatI	WGTACW	2 cut(s)	56, 108
TauI	GCSGC	1 cut(s)	254
TfiI	GAWTC	1 cut(s)	246
Tru1I	TTAA	1 cut(s)	137
Tru9I	TTAA	1 cut(s)	137
TscAI	CASTG	1 cut(s)	76
TseI	GCWGC	3 cut(s)	90, 122, 428
TspGWI	ACGGA	1 cut(s)	214
TspRI	CASTG	1 cut(s)	76
VneI	GTGCAC	1 cut(s)	218
XspI	CTAG	2 cut(s)	54, 66
ZrmI	AGTACT	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.