Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0024921

Physical Location & Seq

Genomic Coordinates Reverse (-)

62606613 .. 62607192

Gene Structure 580 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG448000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGCAGGCATCTCAATTTTCTTGACATTTGTGGTTCTCTTCCTTACTAGTACTAAAGCTAGCACTGATCAGACGAGCAACAGCAGCCGAGTTTATATTGTGTACATGGGATCTGCAGCTCCAAACTCTTTAACCAGCACTACAGCTTCCTTGAGGACTGACCATGCTCACCTCCTTACTTCTCTGTCGAGACGGAAAGCAAATGCGCTGGTGCACATTTACAGGCATGGTTTCGCAGGATTCGCGGCTCGGCTATCAGAGGAGGAGGCACAGTCGATGGCTCAAAAACCTGGAGTTATATCTGTTTTTCCTGATCACTTACTGAAACTCCACACCACTCATTCCTGGGATTTCCTCAAGTATCAGACTGCGTTAGAAATCGACTCATTTCCTAACAGCATCTCCGAGAATGATGATGGTGCTGCTGATGACACAGCACCGGACTCTAATGGATCTGACACCATTATCGGCATTTTAGACACAGGTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002832 GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0010033 GO:0010037 GO:0016787 GO:0017171 GO:0019538 GO:0030312 GO:0031347 GO:0031348 GO:0032101 GO:0032102 GO:0042221 GO:0042493 GO:0043170 GO:0043900 GO:0043901 GO:0044238 GO:0044464 GO:0048046 GO:0048519 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:0070011 GO:0071704 GO:0071944 GO:0072347 GO:0080134 GO:0140096 GO:1900424 GO:1900425 GO:1901564 GO:1901700 GO:2000026 GO:2000038 GO:2000122

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

163

Amino Acids

17.59

Weight (kDa)

5.34

Isoelectric Point (pI)

31.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I9	PF05922	31 - 111	5.1e-19	Peptidase inhibitor I9

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0024921)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0451691
rosa_samantha	Rh6BG467500 Rh6CG448000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	245
AciI	CCGC	1 cut(s)	245
AclWI	GGATC	2 cut(s)	118, 460
AfaI	GTAC	2 cut(s)	52, 104
AhlI	ACTAGT	1 cut(s)	47
AjnI	CCWGG	2 cut(s)	289, 344
AluBI	AGCT	3 cut(s)	59, 119, 146
AluI	AGCT	3 cut(s)	59, 119, 146
Alw21I	GWGCWC	1 cut(s)	216
Alw26I	GTCTC	1 cut(s)	184
Alw44I	GTGCAC	1 cut(s)	212
AlwI	GGATC	2 cut(s)	118, 460
ApaLI	GTGCAC	1 cut(s)	212
ApeKI	GCWGC	3 cut(s)	84, 116, 422
AspLEI	GCGC	1 cut(s)	208
AsuHPI	GGTGA	1 cut(s)	161
AsuNHI	GCTAGC	1 cut(s)	59
BaeGI	GKGCMC	1 cut(s)	216
Bbv12I	GWGCWC	1 cut(s)	216
BbvI	GCAGC	3 cut(s)	96, 128, 409
BccI	CCATC	2 cut(s)	271, 410
BciT130I	CCWGG	2 cut(s)	291, 346
BclI	TGATCA	2 cut(s)	67, 313
BcoDI	GTCTC	1 cut(s)	184
BcuI	ACTAGT	1 cut(s)	47
BfaI	CTAG	2 cut(s)	48, 60
BfmI	CTRYAG	2 cut(s)	114, 141
BisI	GCNGC	4 cut(s)	85, 117, 246, 423
BlsI	GCNGC	4 cut(s)	86, 118, 247, 424
BmcAI	AGTACT	1 cut(s)	52
Bme1390I	CCNGG	2 cut(s)	291, 346
BmrFI	CCNGG	2 cut(s)	291, 346
BmsI	GCATC	2 cut(s)	18, 408
BmtI	GCTAGC	1 cut(s)	63
BpmI	CTGGAG	1 cut(s)	312
BpuEI	CTTGAG	2 cut(s)	172, 341
BsaJI	CCNNGG	1 cut(s)	345
BsaWI	WCCGGW	1 cut(s)	439
BsaXI	ACNNNNNCTCC	6 cut(s)	257, 287, 312, 342, 386, 416
BseBI	CCWGG	2 cut(s)	291, 346
BseDI	CCNNGG	1 cut(s)	345
BseRI	GAGGAG	2 cut(s)	275, 278
BseSI	GKGCMC	1 cut(s)	216
BseXI	GCAGC	3 cut(s)	96, 128, 409
Bsh1236I	CGCG	1 cut(s)	245
BsiHKAI	GWGCWC	1 cut(s)	216
BsiSI	CCGG	1 cut(s)	440
BsmAI	GTCTC	1 cut(s)	184
BsmBI	CGTCTC	1 cut(s)	184
Bsp1286I	GDGCHC	1 cut(s)	216
Bsp1407I	TGTACA	1 cut(s)	102
Bsp143I	GATC	4 cut(s)	67, 110, 313, 452
BspACI	CCGC	1 cut(s)	245
BspFNI	CGCG	1 cut(s)	245
BspMAI	CTGCAG	1 cut(s)	118
BspOI	GCTAGC	1 cut(s)	63
BspPI	GGATC	2 cut(s)	118, 460
BsrGI	TGTACA	1 cut(s)	102
BssECI	CCNNGG	1 cut(s)	345
BssMI	GATC	4 cut(s)	67, 110, 313, 452
Bst2UI	CCWGG	2 cut(s)	291, 346
Bst4CI	ACNGT	1 cut(s)	273
Bst6I	CTCTTC	1 cut(s)	44
BstAUI	TGTACA	1 cut(s)	102
BstC8I	GCNNGC	2 cut(s)	7, 61
BstFNI	CGCG	1 cut(s)	245
BstHHI	GCGC	1 cut(s)	208
BstKTI	GATC	4 cut(s)	70, 113, 316, 455
BstMAI	GTCTC	1 cut(s)	184
BstMBI	GATC	4 cut(s)	67, 110, 313, 452
BstMWI	GCNNNNNNNGC	2 cut(s)	84, 242
BstNI	CCWGG	2 cut(s)	291, 346
BstSCI	CCNGG	2 cut(s)	289, 344
BstSFI	CTRYAG	2 cut(s)	114, 141
BstSLI	GKGCMC	1 cut(s)	216
BstUI	CGCG	1 cut(s)	245
BstV1I	GCAGC	3 cut(s)	96, 128, 409
BstX2I	RGATCY	2 cut(s)	110, 452
BstYI	RGATCY	2 cut(s)	110, 452
BtsIMutI	CAGTG	1 cut(s)	63
Cac8I	GCNNGC	2 cut(s)	7, 61
CfoI	GCGC	1 cut(s)	208
Csp6I	GTAC	2 cut(s)	51, 103
CviAII	CATG	3 cut(s)	106, 164, 227
CviJI	RGCY	7 cut(s)	59, 87, 119, 146, 248, 253, 281
CviKI_1	RGCY	7 cut(s)	59, 87, 119, 146, 248, 253, 281
CviQI	GTAC	2 cut(s)	51, 103
DpnI	GATC	4 cut(s)	69, 112, 315, 454
DpnII	GATC	4 cut(s)	67, 110, 313, 452
Eam1104I	CTCTTC	1 cut(s)	44
EarI	CTCTTC	1 cut(s)	44
EcoRII	CCWGG	2 cut(s)	289, 344
Esp3I	CGTCTC	1 cut(s)	184
FaeI	CATG	3 cut(s)	109, 167, 230
FaiI	YATR	5 cut(s)	96, 107, 165, 228, 299
FatI	CATG	3 cut(s)	105, 163, 226
FbaI	TGATCA	2 cut(s)	67, 313
Fnu4HI	GCNGC	4 cut(s)	85, 117, 246, 423
Fsp4HI	GCNGC	4 cut(s)	85, 117, 246, 423
FspBI	CTAG	2 cut(s)	48, 60
GlaI	GCGC	1 cut(s)	207
GluI	GCNGC	4 cut(s)	85, 117, 246, 423
GsuI	CTGGAG	1 cut(s)	312
HapII	CCGG	1 cut(s)	440
HhaI	GCGC	1 cut(s)	208
Hin1II	CATG	3 cut(s)	109, 167, 230
Hin6I	GCGC	1 cut(s)	206
HinP1I	GCGC	1 cut(s)	206
HinfI	GANTC	3 cut(s)	240, 383, 443
HpaII	CCGG	1 cut(s)	440
HphI	GGTGA	1 cut(s)	161
Hpy166II	GTNNAC	2 cut(s)	103, 214
Hpy188I	TCNGA	5 cut(s)	72, 259, 366, 406, 457
Hpy188III	TCNNGA	3 cut(s)	22, 189, 311
Hpy8I	GTNNAC	2 cut(s)	103, 214
HpyCH4III	ACNGT	1 cut(s)	273
HpyCH4V	TGCA	2 cut(s)	116, 214
HpyF10VI	GCNNNNNNNGC	2 cut(s)	84, 242
Hsp92II	CATG	3 cut(s)	109, 167, 230
HspAI	GCGC	1 cut(s)	206
Ksp22I	TGATCA	2 cut(s)	67, 313
Kzo9I	GATC	4 cut(s)	67, 110, 313, 452
LmnI	GCTCC	1 cut(s)	124
Lsp1109I	GCAGC	3 cut(s)	96, 128, 409
LweI	GCATC	2 cut(s)	18, 408
MaeI	CTAG	2 cut(s)	48, 60
MalI	GATC	4 cut(s)	69, 112, 315, 454
MboI	GATC	4 cut(s)	67, 110, 313, 452
MboII	GAAGA	1 cut(s)	31
MflI	RGATCY	2 cut(s)	110, 452
MhlI	GDGCHC	1 cut(s)	216
MluCI	AATT	1 cut(s)	15
MlyI	GAGTC	2 cut(s)	377, 437
MnlI	CCTC	6 cut(s)	147, 182, 253, 256, 259, 365
MseI	TTAA	1 cut(s)	131
MspI	CCGG	1 cut(s)	440
MspR9I	CCNGG	2 cut(s)	291, 346
MvaI	CCWGG	2 cut(s)	291, 346
MvnI	CGCG	1 cut(s)	245
MwoI	GCNNNNNNNGC	2 cut(s)	84, 242
NdeII	GATC	4 cut(s)	67, 110, 313, 452
NheI	GCTAGC	1 cut(s)	59
NlaIII	CATG	3 cut(s)	109, 167, 230
NmeAIII	GCCGAG	2 cut(s)	113, 229
PfeI	GAWTC	1 cut(s)	240
PkrI	GCNGC	4 cut(s)	86, 118, 247, 424
PleI	GAGTC	2 cut(s)	377, 437
PpsI	GAGTC	2 cut(s)	377, 437
Psp6I	CCWGG	2 cut(s)	289, 344
PspGI	CCWGG	2 cut(s)	289, 344
PstI	CTGCAG	1 cut(s)	118
PsuI	RGATCY	2 cut(s)	110, 452
RsaI	GTAC	2 cut(s)	52, 104
RsaNI	GTAC	2 cut(s)	51, 103
SaqAI	TTAA	1 cut(s)	131
SatI	GCNGC	4 cut(s)	85, 117, 246, 423
Sau3AI	GATC	4 cut(s)	67, 110, 313, 452
ScaI	AGTACT	1 cut(s)	52
SchI	GAGTC	2 cut(s)	377, 437
ScrFI	CCNGG	2 cut(s)	291, 346
SduI	GDGCHC	1 cut(s)	216
SetI	ASST	6 cut(s)	61, 121, 148, 174, 292, 487
SfaNI	GCATC	2 cut(s)	18, 408
SfcI	CTRYAG	2 cut(s)	114, 141
SmlI	CTYRAG	2 cut(s)	151, 356
SmoI	CTYRAG	2 cut(s)	151, 356
SpeI	ACTAGT	1 cut(s)	47
Sse9I	AATT	1 cut(s)	15
SsiI	CCGC	1 cut(s)	245
SspMI	CTAG	2 cut(s)	48, 60
StyD4I	CCNGG	2 cut(s)	289, 344
TaaI	ACNGT	1 cut(s)	273
TaqI	TCGA	3 cut(s)	188, 275, 381
TasI	AATT	1 cut(s)	15
TatI	WGTACW	2 cut(s)	50, 102
TauI	GCSGC	1 cut(s)	248
TfiI	GAWTC	1 cut(s)	240
Tru1I	TTAA	1 cut(s)	131
Tru9I	TTAA	1 cut(s)	131
TscAI	CASTG	1 cut(s)	70
TseI	GCWGC	3 cut(s)	84, 116, 422
TspGWI	ACGGA	1 cut(s)	208
TspRI	CASTG	1 cut(s)	70
VneI	GTGCAC	1 cut(s)	212
XspI	CTAG	2 cut(s)	48, 60
ZrmI	AGTACT	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.