Rh6BG478700

Belongs to the peptidase S10 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0025084
Physical Location & Seq
Reverse (-)
68490199 .. 68490871
673 bp
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UTR
Exon/CDS
Intron
Rh6BG478700.1

Sequence Viewer

Length: 393 bp
ATGTATGCACGTATATATGCTACTTATTTTGGAAGCAATGTGCAGATCGGAAATGCTTGGATCGATGATAATCATGGTGAAATGGGTATTTATGAATGTTTGTGGAAACATGCTTTGAACTCTGACGAAACCTATGAAGGCATACACAAATATTGTGACTTTGTATCTGATATTTTCTCGAGCAAGTGCACAAAATATCAAATTCAAGCAAGTAATGAGCCTGGAGACGTTGATATCTACAACATCTACGCTCCACTTTGCAAAATATCATCCTCATCAGATACCACATACATCTCAATCGGTTCTGCATGCTATTGGATGGACAGACAGCCCACCAACAATCCTACCCACAAAGCGTCTCCTAGAAAGTGGGATAACAGCGTGGATATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

130

Amino Acids

14.86

Weight (kDa)

4.97

Isoelectric Point (pI)

43.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 14 - 107 4.4e-09 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025084)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0307461
rosa_rugosa Rorug06G0358700
rosa_samantha Rh6BG478700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 68
AcsI RAATTY 1 cut(s) 201
AgsI TTSAA 2 cut(s) 118, 206
AjnI CCWGG 1 cut(s) 220
Alw21I GWGCWC 1 cut(s) 191
Alw26I GTCTC 2 cut(s) 219, 363
Alw44I GTGCAC 1 cut(s) 187
AlwI GGATC 1 cut(s) 68
Ama87I CYCGRG 1 cut(s) 178
ApaLI GTGCAC 1 cut(s) 187
ApoI RAATTY 1 cut(s) 201
AsuHPI GGTGA 1 cut(s) 89
AvaI CYCGRG 1 cut(s) 178
BaeGI GKGCMC 1 cut(s) 191
Bbv12I GWGCWC 1 cut(s) 191
BccI CCATC 1 cut(s) 313
BciT130I CCWGG 1 cut(s) 222
BcoDI GTCTC 2 cut(s) 219, 363
BfaI CTAG 1 cut(s) 363
Bme1390I CCNGG 1 cut(s) 222
BmeT110I CYCGRG 1 cut(s) 178
BmrFI CCNGG 1 cut(s) 222
BpmI CTGGAG 1 cut(s) 243
Bsa29I ATCGAT 1 cut(s) 63
BsaAI YACGTR 1 cut(s) 11
BsaBI GATNNNNATC 1 cut(s) 69
Bse3DI GCAATG 1 cut(s) 43
Bse8I GATNNNNATC 1 cut(s) 69
BseBI CCWGG 1 cut(s) 222
BseCI ATCGAT 1 cut(s) 63
BseGI GGATG 2 cut(s) 269, 324
BseJI GATNNNNATC 1 cut(s) 69
BseMI GCAATG 1 cut(s) 43
BseSI GKGCMC 1 cut(s) 191
BsgI GTGCAG 1 cut(s) 62
BshVI ATCGAT 1 cut(s) 63
BsiHKAI GWGCWC 1 cut(s) 191
BsiHKCI CYCGRG 1 cut(s) 178
BsmAI GTCTC 2 cut(s) 219, 363
BsmBI CGTCTC 2 cut(s) 219, 363
BsoBI CYCGRG 1 cut(s) 178
Bsp1286I GDGCHC 1 cut(s) 191
Bsp143I GATC 2 cut(s) 45, 60
BspDI ATCGAT 1 cut(s) 63
BspPI GGATC 1 cut(s) 68
BsrDI GCAATG 1 cut(s) 43
BssMI GATC 2 cut(s) 45, 60
Bst2UI CCWGG 1 cut(s) 222
BstBAI YACGTR 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 310
BstF5I GGATG 2 cut(s) 269, 324
BstKTI GATC 2 cut(s) 48, 63
BstMAI GTCTC 2 cut(s) 219, 363
BstMBI GATC 2 cut(s) 45, 60
BstNI CCWGG 1 cut(s) 222
BstNSI RCATGY 2 cut(s) 113, 312
BstSCI CCNGG 1 cut(s) 220
BstSLI GKGCMC 1 cut(s) 191
Bsu15I ATCGAT 1 cut(s) 63
BsuTUI ATCGAT 1 cut(s) 63
BtsCI GGATG 2 cut(s) 269, 324
Cac8I GCNNGC 1 cut(s) 310
ClaI ATCGAT 1 cut(s) 63
CseI GACGC 1 cut(s) 345
CviAII CATG 3 cut(s) 74, 110, 309
CviJI RGCY 2 cut(s) 220, 331
CviKI_1 RGCY 2 cut(s) 220, 331
DpnI GATC 2 cut(s) 47, 62
DpnII GATC 2 cut(s) 45, 60
Eco32I GATATC 1 cut(s) 235
Eco88I CYCGRG 1 cut(s) 178
EcoRII CCWGG 1 cut(s) 220
EcoRV GATATC 1 cut(s) 235
Esp3I CGTCTC 2 cut(s) 219, 363
FaeI CATG 3 cut(s) 77, 113, 312
FatI CATG 3 cut(s) 73, 109, 308
FokI GGATG 2 cut(s) 256, 331
FspBI CTAG 1 cut(s) 363
GsuI CTGGAG 1 cut(s) 243
HgaI GACGC 1 cut(s) 345
Hin1II CATG 3 cut(s) 77, 113, 312
HphI GGTGA 1 cut(s) 89
Hpy166II GTNNAC 1 cut(s) 189
Hpy188I TCNGA 4 cut(s) 50, 124, 169, 280
Hpy188III TCNNGA 1 cut(s) 178
Hpy8I GTNNAC 1 cut(s) 189
HpyAV CCTTC 1 cut(s) 131
HpyCH4IV ACGT 2 cut(s) 10, 228
HpyCH4V TGCA 5 cut(s) 8, 43, 189, 261, 308
HpySE526I ACGT 2 cut(s) 10, 228
Hsp92II CATG 3 cut(s) 77, 113, 312
Kzo9I GATC 2 cut(s) 45, 60
LmnI GCTCC 1 cut(s) 256
LpnPI CCDG 2 cut(s) 207, 234
MaeI CTAG 1 cut(s) 363
MaeII ACGT 2 cut(s) 10, 228
MaeIII GTNAC 1 cut(s) 155
MalI GATC 2 cut(s) 47, 62
MboI GATC 2 cut(s) 45, 60
MhlI GDGCHC 1 cut(s) 191
MluCI AATT 1 cut(s) 201
MnlI CCTC 1 cut(s) 283
MspR9I CCNGG 1 cut(s) 222
MvaI CCWGG 1 cut(s) 222
NdeII GATC 2 cut(s) 45, 60
NlaIII CATG 3 cut(s) 77, 113, 312
NmuCI GTSAC 1 cut(s) 155
NspI RCATGY 2 cut(s) 113, 312
PaeI GCATGC 1 cut(s) 312
PaeR7I CTCGAG 1 cut(s) 178
Ppu21I YACGTR 1 cut(s) 11
Psp6I CCWGG 1 cut(s) 220
PspGI CCWGG 1 cut(s) 220
Sau3AI GATC 2 cut(s) 45, 60
ScrFI CCNGG 1 cut(s) 222
SduI GDGCHC 1 cut(s) 191
SetI ASST 3 cut(s) 13, 134, 231
Sfr274I CTCGAG 1 cut(s) 178
SlaI CTCGAG 1 cut(s) 178
SmlI CTYRAG 1 cut(s) 178
SmoI CTYRAG 1 cut(s) 178
SphI GCATGC 1 cut(s) 312
Sse9I AATT 1 cut(s) 201
SspI AATATT 1 cut(s) 152
SspMI CTAG 1 cut(s) 363
StyD4I CCNGG 1 cut(s) 220
TaiI ACGT 2 cut(s) 13, 231
TaqI TCGA 2 cut(s) 63, 179
TasI AATT 1 cut(s) 201
TseFI GTSAC 1 cut(s) 155
Tsp45I GTSAC 1 cut(s) 155
TspDTI ATGAA 2 cut(s) 108, 150
VneI GTGCAC 1 cut(s) 187
XapI RAATTY 1 cut(s) 201
XceI RCATGY 2 cut(s) 113, 312
XhoI CTCGAG 1 cut(s) 178
XspI CTAG 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.