Rh6BG526200

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Forward (+)
71789185 .. 71789495
311 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG526200.1

Sequence Viewer

Length: 219 bp
ATGGTTTTTCTGTTTGTGGCGTCGGCCCAACCAGAACGACCGTACACAATGCGGATAAACTGTGGAGCCCGGGAGAATGTTATAACACCACCAGAGGAGACGGTGTGGTACCACGACTTTGGCTTCACTGGAGGCATAAGTAAAAATACCTCTATCTTGGGTCTTAACGGCCCTCCATTTGATACTGTTCGAGTATTTCCCTTAAGTCCTGAGGAATGA

Protein Analysis

72

Amino Acids

8.05

Weight (kDa)

4.94

Isoelectric Point (pI)

43.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021745)

Species Orthologous Gene IDs
rosa_roxburghii Rroxscaffold_7G00156730
rosa_rugosa Rorug06G0396400
rosa_samantha Rh6BG526200 Rh6CG531200 Rh6DG515900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 83
Acc65I GGTACC 1 cut(s) 108
AccB1I GGYRCC 1 cut(s) 108
AciI CCGC 1 cut(s) 52
AcyI GRCGYC 1 cut(s) 20
AfaI GTAC 2 cut(s) 44, 110
AflII CTTAAG 1 cut(s) 202
Alw26I GTCTC 1 cut(s) 92
Ama87I CYCGRG 1 cut(s) 69
AoxI GGCC 2 cut(s) 24, 169
Asp718I GGTACC 1 cut(s) 108
AspS9I GGNCC 2 cut(s) 25, 170
AsuC2I CCSGG 2 cut(s) 70, 71
AvaI CYCGRG 1 cut(s) 69
AxyI CCTNAGG 1 cut(s) 210
BanI GGYRCC 1 cut(s) 108
BanII GRGCYC 1 cut(s) 70
BceAI ACGGC 1 cut(s) 184
BcnI CCSGG 2 cut(s) 70, 71
BcoDI GTCTC 1 cut(s) 92
BfrI CTTAAG 1 cut(s) 202
Bme1390I CCNGG 2 cut(s) 70, 71
BmeT110I CYCGRG 1 cut(s) 69
BmgT120I GGNCC 2 cut(s) 25, 170
BmiI GGNNCC 2 cut(s) 67, 110
BmrFI CCNGG 2 cut(s) 70, 71
BpmI CTGGAG 1 cut(s) 150
BpuMI CCSGG 2 cut(s) 70, 71
BsaHI GRCGYC 1 cut(s) 20
BsaJI CCNNGG 1 cut(s) 69
BsaXI ACNNNNNCTCC 2 cut(s) 89, 119
Bse1I ACTGG 1 cut(s) 133
Bse21I CCTNAGG 1 cut(s) 210
BseDI CCNNGG 1 cut(s) 69
BseMII CTCAG 1 cut(s) 201
BseNI ACTGG 1 cut(s) 133
BseRI GAGGAG 1 cut(s) 110
Bsh1285I CGRYCG 1 cut(s) 41
BshFI GGCC 2 cut(s) 26, 171
BshNI GGYRCC 1 cut(s) 108
BsiEI CGRYCG 1 cut(s) 41
BsiHKCI CYCGRG 1 cut(s) 69
BsiSI CCGG 1 cut(s) 70
BsmAI GTCTC 1 cut(s) 92
BsmBI CGTCTC 1 cut(s) 92
BsnI GGCC 2 cut(s) 26, 171
BsoBI CYCGRG 1 cut(s) 69
Bsp1286I GDGCHC 1 cut(s) 70
BspACI CCGC 1 cut(s) 52
BspANI GGCC 2 cut(s) 26, 171
BspCNI CTCAG 1 cut(s) 202
BspLI GGNNCC 2 cut(s) 67, 110
BspT107I GGYRCC 1 cut(s) 108
BspTI CTTAAG 1 cut(s) 202
BsrI ACTGG 1 cut(s) 133
BssECI CCNNGG 1 cut(s) 69
BssNI GRCGYC 1 cut(s) 20
Bst4CI ACNGT 4 cut(s) 42, 62, 103, 187
BstACI GRCGYC 1 cut(s) 20
BstAFI CTTAAG 1 cut(s) 202
BstDEI CTNAG 1 cut(s) 210
BstMAI GTCTC 1 cut(s) 92
BstMCI CGRYCG 1 cut(s) 41
BstSCI CCNGG 2 cut(s) 68, 69
BstXI CCANNNNNNTGG 1 cut(s) 119
Bsu36I CCTNAGG 1 cut(s) 210
BsuRI GGCC 2 cut(s) 26, 171
BtsIMutI CAGTG 1 cut(s) 126
Cfr13I GGNCC 2 cut(s) 25, 170
Cfr9I CCCGGG 1 cut(s) 69
CseI GACGC 1 cut(s) 9
Csp6I GTAC 2 cut(s) 43, 109
CviJI RGCY 4 cut(s) 26, 68, 123, 171
CviKI_1 RGCY 4 cut(s) 26, 68, 123, 171
CviQI GTAC 2 cut(s) 43, 109
DdeI CTNAG 1 cut(s) 210
Eco24I GRGCYC 1 cut(s) 70
Eco81I CCTNAGG 1 cut(s) 210
Eco88I CYCGRG 1 cut(s) 69
EcoT38I GRGCYC 1 cut(s) 70
Esp3I CGTCTC 1 cut(s) 92
FaiI YATR 2 cut(s) 83, 137
FriOI GRGCYC 1 cut(s) 70
GsuI CTGGAG 1 cut(s) 150
HaeIII GGCC 2 cut(s) 26, 171
HapII CCGG 1 cut(s) 70
HgaI GACGC 1 cut(s) 9
Hin1I GRCGYC 1 cut(s) 20
HpaII CCGG 1 cut(s) 70
Hpy166II GTNNAC 1 cut(s) 45
Hpy188III TCNNGA 1 cut(s) 209
Hpy8I GTNNAC 1 cut(s) 45
Hpy99I CGWCG 1 cut(s) 25
HpyCH4III ACNGT 4 cut(s) 42, 62, 103, 187
HpyF3I CTNAG 1 cut(s) 210
Hsp92I GRCGYC 1 cut(s) 20
KpnI GGTACC 1 cut(s) 112
LmnI GCTCC 1 cut(s) 65
LpnPI CCDG 4 cut(s) 45, 83, 105, 114
MhlI GDGCHC 1 cut(s) 70
MnlI CCTC 5 cut(s) 88, 125, 160, 183, 205
MseI TTAA 2 cut(s) 165, 203
MspCI CTTAAG 1 cut(s) 202
MspI CCGG 1 cut(s) 70
MspR9I CCNGG 2 cut(s) 70, 71
NciI CCSGG 2 cut(s) 70, 71
NlaIV GGNNCC 2 cut(s) 67, 110
PsiI TTATAA 1 cut(s) 83
PspN4I GGNNCC 2 cut(s) 67, 110
PspPI GGNCC 2 cut(s) 25, 170
RsaI GTAC 2 cut(s) 44, 110
RsaNI GTAC 2 cut(s) 43, 109
SaqAI TTAA 2 cut(s) 165, 203
Sau96I GGNCC 2 cut(s) 25, 170
ScrFI CCNGG 2 cut(s) 70, 71
SduI GDGCHC 1 cut(s) 70
SetI ASST 1 cut(s) 152
SgeI CNNG 9 cut(s) 44, 81, 82, 83, 104, 125, 141, 169, 203
SmaI CCCGGG 1 cut(s) 71
SmlI CTYRAG 1 cut(s) 202
SmoI CTYRAG 1 cut(s) 202
SsiI CCGC 1 cut(s) 52
StyD4I CCNGG 2 cut(s) 68, 69
TaaI ACNGT 4 cut(s) 42, 62, 103, 187
TaqI TCGA 1 cut(s) 190
Tru1I TTAA 2 cut(s) 165, 203
Tru9I TTAA 2 cut(s) 165, 203
TscAI CASTG 1 cut(s) 133
TspMI CCCGGG 1 cut(s) 69
TspRI CASTG 1 cut(s) 133
Vha464I CTTAAG 1 cut(s) 202
XmaI CCCGGG 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.