Rh6DG515900

leucine-rich repeat receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0021745
Physical Location & Seq
Reverse (-)
66772147 .. 66772526
380 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG515900.1

Sequence Viewer

Length: 288 bp
ATGGGGAGCAAGCTTCTTATTATGCTTCTCATGGTTTTTCTGTTTGTGGCGTCGGCCCAACCAGAACGACCGTACACAATGCGGATAAACTGTGGAGCCCGGGAGAATGTTATAACACCACCAGAGGAGACGGTGTGGTACCACGACTTTGGCTTCACTGGAGGCATAAGTAAAAATACCTCTATCTTGGGTCTTAACGGCCCTCCATTTGAAACTGTTCGAGTATTTCCCTTAAGTCCCGAGGAATACTACCTCTTGCCCCATGTTCCCCAGGACGTTTTCTTATAA

Protein Analysis

95

Amino Acids

10.75

Weight (kDa)

5.17

Isoelectric Point (pI)

44.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0021745)

Species Orthologous Gene IDs
rosa_roxburghii Rroxscaffold_7G00156730
rosa_rugosa Rorug06G0396400
rosa_samantha Rh6BG526200 Rh6CG531200 Rh6DG515900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 113, 286
Acc65I GGTACC 1 cut(s) 138
AccB1I GGYRCC 1 cut(s) 138
AciI CCGC 1 cut(s) 82
AcyI GRCGYC 1 cut(s) 50
AfaI GTAC 2 cut(s) 74, 140
AflII CTTAAG 1 cut(s) 232
AgsI TTSAA 1 cut(s) 212
AjnI CCWGG 1 cut(s) 270
AluBI AGCT 1 cut(s) 13
AluI AGCT 1 cut(s) 13
Alw26I GTCTC 1 cut(s) 122
Ama87I CYCGRG 2 cut(s) 99, 239
AoxI GGCC 2 cut(s) 54, 199
Asp700I GAANNNNTTC 1 cut(s) 216
Asp718I GGTACC 1 cut(s) 138
AspS9I GGNCC 2 cut(s) 55, 200
AsuC2I CCSGG 2 cut(s) 100, 101
AvaI CYCGRG 2 cut(s) 99, 239
BanI GGYRCC 1 cut(s) 138
BanII GRGCYC 1 cut(s) 100
BceAI ACGGC 1 cut(s) 214
BciT130I CCWGG 1 cut(s) 272
BcnI CCSGG 2 cut(s) 100, 101
BcoDI GTCTC 1 cut(s) 122
BfrI CTTAAG 1 cut(s) 232
Bme1390I CCNGG 3 cut(s) 100, 101, 272
BmeT110I CYCGRG 2 cut(s) 99, 239
BmgT120I GGNCC 2 cut(s) 55, 200
BmiI GGNNCC 2 cut(s) 97, 140
BmrFI CCNGG 3 cut(s) 100, 101, 272
BpmI CTGGAG 1 cut(s) 180
BpuMI CCSGG 2 cut(s) 100, 101
BsaHI GRCGYC 1 cut(s) 50
BsaJI CCNNGG 3 cut(s) 99, 240, 270
BsaXI ACNNNNNCTCC 2 cut(s) 119, 149
Bse1I ACTGG 1 cut(s) 163
BseBI CCWGG 1 cut(s) 272
BseDI CCNNGG 3 cut(s) 99, 240, 270
BseNI ACTGG 1 cut(s) 163
BseRI GAGGAG 1 cut(s) 140
Bsh1285I CGRYCG 1 cut(s) 71
BshFI GGCC 2 cut(s) 56, 201
BshNI GGYRCC 1 cut(s) 138
BsiEI CGRYCG 1 cut(s) 71
BsiHKCI CYCGRG 2 cut(s) 99, 239
BsiSI CCGG 1 cut(s) 100
BslFI GGGAC 1 cut(s) 222
BsmAI GTCTC 1 cut(s) 122
BsmBI CGTCTC 1 cut(s) 122
BsmFI GGGAC 1 cut(s) 222
BsnI GGCC 2 cut(s) 56, 201
BsoBI CYCGRG 2 cut(s) 99, 239
Bsp1286I GDGCHC 1 cut(s) 100
BspACI CCGC 1 cut(s) 82
BspANI GGCC 2 cut(s) 56, 201
BspLI GGNNCC 2 cut(s) 97, 140
BspT107I GGYRCC 1 cut(s) 138
BspTI CTTAAG 1 cut(s) 232
BsrI ACTGG 1 cut(s) 163
BssECI CCNNGG 3 cut(s) 99, 240, 270
BssNI GRCGYC 1 cut(s) 50
Bst2UI CCWGG 1 cut(s) 272
Bst4CI ACNGT 4 cut(s) 72, 92, 133, 217
BstACI GRCGYC 1 cut(s) 50
BstAFI CTTAAG 1 cut(s) 232
BstC8I GCNNGC 1 cut(s) 11
BstMAI GTCTC 1 cut(s) 122
BstMCI CGRYCG 1 cut(s) 71
BstNI CCWGG 1 cut(s) 272
BstSCI CCNGG 3 cut(s) 98, 99, 270
BstXI CCANNNNNNTGG 1 cut(s) 149
BsuRI GGCC 2 cut(s) 56, 201
BtsIMutI CAGTG 1 cut(s) 156
Cac8I GCNNGC 1 cut(s) 11
Cfr13I GGNCC 2 cut(s) 55, 200
Cfr9I CCCGGG 1 cut(s) 99
CseI GACGC 1 cut(s) 39
Csp6I GTAC 2 cut(s) 73, 139
CviAII CATG 2 cut(s) 31, 263
CviJI RGCY 5 cut(s) 13, 56, 98, 153, 201
CviKI_1 RGCY 5 cut(s) 13, 56, 98, 153, 201
CviQI GTAC 2 cut(s) 73, 139
Eco24I GRGCYC 1 cut(s) 100
Eco88I CYCGRG 2 cut(s) 99, 239
EcoRII CCWGG 1 cut(s) 270
EcoT38I GRGCYC 1 cut(s) 100
Esp3I CGTCTC 1 cut(s) 122
FaeI CATG 2 cut(s) 34, 266
FaiI YATR 6 cut(s) 23, 32, 113, 167, 264, 286
FaqI GGGAC 1 cut(s) 222
FatI CATG 2 cut(s) 30, 262
FriOI GRGCYC 1 cut(s) 100
GsuI CTGGAG 1 cut(s) 180
HaeIII GGCC 2 cut(s) 56, 201
HapII CCGG 1 cut(s) 100
HgaI GACGC 1 cut(s) 39
Hin1I GRCGYC 1 cut(s) 50
Hin1II CATG 2 cut(s) 34, 266
HindIII AAGCTT 1 cut(s) 11
HpaII CCGG 1 cut(s) 100
Hpy166II GTNNAC 1 cut(s) 75
Hpy188III TCNNGA 1 cut(s) 239
Hpy8I GTNNAC 1 cut(s) 75
Hpy99I CGWCG 1 cut(s) 55
HpyCH4III ACNGT 4 cut(s) 72, 92, 133, 217
HpyCH4IV ACGT 1 cut(s) 276
HpySE526I ACGT 1 cut(s) 276
Hsp92I GRCGYC 1 cut(s) 50
Hsp92II CATG 2 cut(s) 34, 266
KpnI GGTACC 1 cut(s) 142
LmnI GCTCC 2 cut(s) 6, 95
LpnPI CCDG 6 cut(s) 75, 113, 135, 144, 257, 284
MaeII ACGT 1 cut(s) 276
MhlI GDGCHC 1 cut(s) 100
MnlI CCTC 6 cut(s) 118, 155, 190, 213, 235, 263
MroXI GAANNNNTTC 1 cut(s) 216
MseI TTAA 2 cut(s) 195, 233
MspCI CTTAAG 1 cut(s) 232
MspI CCGG 1 cut(s) 100
MspR9I CCNGG 3 cut(s) 100, 101, 272
MvaI CCWGG 1 cut(s) 272
NciI CCSGG 2 cut(s) 100, 101
NlaIII CATG 2 cut(s) 34, 266
NlaIV GGNNCC 2 cut(s) 97, 140
PdmI GAANNNNTTC 1 cut(s) 216
PsiI TTATAA 2 cut(s) 113, 286
Psp6I CCWGG 1 cut(s) 270
PspGI CCWGG 1 cut(s) 270
PspN4I GGNNCC 2 cut(s) 97, 140
PspPI GGNCC 2 cut(s) 55, 200
RsaI GTAC 2 cut(s) 74, 140
RsaNI GTAC 2 cut(s) 73, 139
SaqAI TTAA 2 cut(s) 195, 233
Sau96I GGNCC 2 cut(s) 55, 200
ScrFI CCNGG 3 cut(s) 100, 101, 272
SduI GDGCHC 1 cut(s) 100
SetI ASST 4 cut(s) 15, 182, 255, 279
SmaI CCCGGG 1 cut(s) 101
SmlI CTYRAG 1 cut(s) 232
SmoI CTYRAG 1 cut(s) 232
SsiI CCGC 1 cut(s) 82
StyD4I CCNGG 3 cut(s) 98, 99, 270
TaaI ACNGT 4 cut(s) 72, 92, 133, 217
TaiI ACGT 1 cut(s) 279
TaqI TCGA 1 cut(s) 220
Tru1I TTAA 2 cut(s) 195, 233
Tru9I TTAA 2 cut(s) 195, 233
TscAI CASTG 1 cut(s) 163
TspMI CCCGGG 1 cut(s) 99
TspRI CASTG 1 cut(s) 163
Vha464I CTTAAG 1 cut(s) 232
XmaI CCCGGG 1 cut(s) 99
XmnI GAANNNNTTC 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.