Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0019442

Physical Location & Seq

Genomic Coordinates Forward (+)

10390636 .. 10392225

Gene Structure 1590 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG093900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGAATTCCAACTCTGCAGCCCATTAGCCCAACCCAACAGTAGACCCGAACCCGCTTTTCTCTCGTTCTTCTTCTTAGCGACTCTCTCTGCTCACTTATTCTTCAATCCCAGTTCTTCTCTGGTTTCTCAATCAAACGCCATGGATTCTCAGACCCAGAACACGTCGTTGCAGAGGCTTCAAAATGTGGAGAAGAGAATCGTGAAGGTTTTGGAGCTGGCCGGAAGTGTGATGGACGAGCTTGCAAACCCTATTGGTCCCAGGAGGGAGGCCATCAACAACCATGTCCGCGAGTTCATGCAATTGATCAAGGTACCTCTTCCATACACTACATCTGAAATTAAACTAGTTCTGGAATTTGAGCGGAACCCCAGAATTGAATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016592 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med11

Protein Analysis

128

Amino Acids

14.56

Weight (kDa)

6.11

Isoelectric Point (pI)

48.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med11	PF10280	55 - 104	7.1e-09	Mediator complex protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0019442)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0240721
rosa_rugosa	Rorug07G0338400 Rorug07G0338400
rosa_samantha	Rh6BG097900 Rh6CG093900 Rh6DG087900 Rh7AG493200
rosa_wichuraiana	Rw6G009050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	313
AccB1I	GGYRCC	1 cut(s)	313
AccBSI	CCGCTC	1 cut(s)	364
AccI	GTMKAC	1 cut(s)	43
AccII	CGCG	1 cut(s)	291
AciI	CCGC	3 cut(s)	54, 289, 364
AcoI	YGGCCR	1 cut(s)	219
AcsI	RAATTY	2 cut(s)	5, 356
AfaI	GTAC	1 cut(s)	315
AflIII	ACRYGT	1 cut(s)	162
AgsI	TTSAA	3 cut(s)	106, 182, 380
AhlI	ACTAGT	1 cut(s)	346
AjiI	CACGTC	1 cut(s)	165
AjnI	CCWGG	1 cut(s)	260
AluBI	AGCT	2 cut(s)	217, 241
AluI	AGCT	2 cut(s)	217, 241
AoxI	GGCC	2 cut(s)	219, 270
ApeKI	GCWGC	1 cut(s)	18
ApoI	RAATTY	2 cut(s)	5, 356
Asp718I	GGTACC	1 cut(s)	313
AspS9I	GGNCC	1 cut(s)	257
AvaII	GGWCC	1 cut(s)	257
BanI	GGYRCC	1 cut(s)	313
BbvI	GCAGC	1 cut(s)	30
BccI	CCATC	2 cut(s)	226, 281
BciT130I	CCWGG	1 cut(s)	262
BclI	TGATCA	1 cut(s)	306
BcuI	ACTAGT	1 cut(s)	346
BfaI	CTAG	1 cut(s)	347
BfmI	CTRYAG	1 cut(s)	16
BisI	GCNGC	1 cut(s)	19
BlsI	GCNGC	1 cut(s)	20
Bme1390I	CCNGG	1 cut(s)	262
Bme18I	GGWCC	1 cut(s)	257
BmgBI	CACGTC	1 cut(s)	165
BmgT120I	GGNCC	1 cut(s)	257
BmiI	GGNNCC	3 cut(s)	259, 315, 368
BmrFI	CCNGG	1 cut(s)	262
BmrI	ACTGGG	1 cut(s)	105
BmuI	ACTGGG	1 cut(s)	105
BsaJI	CCNNGG	2 cut(s)	141, 260
Bse1I	ACTGG	1 cut(s)	111
BseBI	CCWGG	1 cut(s)	262
BseDI	CCNNGG	2 cut(s)	141, 260
BseMII	CTCAG	1 cut(s)	164
BseNI	ACTGG	1 cut(s)	111
BseXI	GCAGC	1 cut(s)	30
Bsh1236I	CGCG	1 cut(s)	291
BshFI	GGCC	2 cut(s)	221, 272
BshNI	GGYRCC	1 cut(s)	313
BsiSI	CCGG	1 cut(s)	222
BslFI	GGGAC	1 cut(s)	243
BsmFI	GGGAC	1 cut(s)	243
BsnI	GGCC	2 cut(s)	221, 272
Bsp143I	GATC	1 cut(s)	306
Bsp19I	CCATGG	1 cut(s)	141
BspACI	CCGC	3 cut(s)	54, 289, 364
BspANI	GGCC	2 cut(s)	221, 272
BspCNI	CTCAG	1 cut(s)	163
BspFNI	CGCG	1 cut(s)	291
BspLI	GGNNCC	3 cut(s)	259, 315, 368
BspMAI	CTGCAG	1 cut(s)	20
BspT107I	GGYRCC	1 cut(s)	313
BsrBI	CCGCTC	1 cut(s)	364
BsrI	ACTGG	1 cut(s)	111
BssECI	CCNNGG	2 cut(s)	141, 260
BssMI	GATC	1 cut(s)	306
BssT1I	CCWWGG	1 cut(s)	141
Bst2UI	CCWGG	1 cut(s)	262
Bst4CI	ACNGT	1 cut(s)	41
Bst6I	CTCTTC	2 cut(s)	188, 324
BstC8I	GCNNGC	2 cut(s)	219, 243
BstDEI	CTNAG	2 cut(s)	76, 150
BstDSI	CCRYGG	1 cut(s)	141
BstFNI	CGCG	1 cut(s)	291
BstKTI	GATC	1 cut(s)	309
BstMBI	GATC	1 cut(s)	306
BstNI	CCWGG	1 cut(s)	262
BstSCI	CCNGG	1 cut(s)	260
BstSFI	CTRYAG	1 cut(s)	16
BstUI	CGCG	1 cut(s)	291
BstV1I	GCAGC	1 cut(s)	30
BsuRI	GGCC	2 cut(s)	221, 272
BtgI	CCRYGG	1 cut(s)	141
BtrI	CACGTC	1 cut(s)	165
Cac8I	GCNNGC	2 cut(s)	219, 243
Cfr13I	GGNCC	1 cut(s)	257
Csp6I	GTAC	1 cut(s)	314
CviAII	CATG	3 cut(s)	142, 284, 298
CviJI	RGCY	7 cut(s)	21, 29, 178, 217, 221, 241, 272
CviKI_1	RGCY	7 cut(s)	21, 29, 178, 217, 221, 241, 272
CviQI	GTAC	1 cut(s)	314
DdeI	CTNAG	2 cut(s)	76, 150
DpnI	GATC	1 cut(s)	308
DpnII	GATC	1 cut(s)	306
EaeI	YGGCCR	1 cut(s)	219
Eam1104I	CTCTTC	2 cut(s)	188, 324
EarI	CTCTTC	2 cut(s)	188, 324
Eco130I	CCWWGG	1 cut(s)	141
Eco47I	GGWCC	1 cut(s)	257
EcoRI	GAATTC	1 cut(s)	5
EcoRII	CCWGG	1 cut(s)	260
EcoT14I	CCWWGG	1 cut(s)	141
ErhI	CCWWGG	1 cut(s)	141
FaeI	CATG	3 cut(s)	145, 287, 301
FaiI	YATR	4 cut(s)	143, 285, 299, 325
FaqI	GGGAC	1 cut(s)	243
FatI	CATG	3 cut(s)	141, 283, 297
FauI	CCCGC	1 cut(s)	61
FbaI	TGATCA	1 cut(s)	306
FblI	GTMKAC	1 cut(s)	43
Fnu4HI	GCNGC	1 cut(s)	19
Fsp4HI	GCNGC	1 cut(s)	19
FspBI	CTAG	1 cut(s)	347
GluI	GCNGC	1 cut(s)	19
HaeIII	GGCC	2 cut(s)	221, 272
HapII	CCGG	1 cut(s)	222
Hin1II	CATG	3 cut(s)	145, 287, 301
HinfI	GANTC	3 cut(s)	82, 146, 198
HpaII	CCGG	1 cut(s)	222
Hpy166II	GTNNAC	1 cut(s)	44
Hpy188I	TCNGA	2 cut(s)	153, 337
Hpy188III	TCNNGA	2 cut(s)	202, 353
Hpy8I	GTNNAC	1 cut(s)	44
Hpy99I	CGWCG	1 cut(s)	169
HpyAV	CCTTC	1 cut(s)	199
HpyCH4III	ACNGT	1 cut(s)	41
HpyCH4IV	ACGT	1 cut(s)	164
HpyCH4V	TGCA	4 cut(s)	18, 172, 245, 301
HpyF3I	CTNAG	2 cut(s)	76, 150
HpySE526I	ACGT	1 cut(s)	164
Hsp92II	CATG	3 cut(s)	145, 287, 301
KpnI	GGTACC	1 cut(s)	317
Ksp22I	TGATCA	1 cut(s)	306
Kzo9I	GATC	1 cut(s)	306
LmnI	GCTCC	1 cut(s)	214
LpnPI	CCDG	8 cut(s)	107, 124, 170, 203, 235, 247, 274, 338
Lsp1109I	GCAGC	1 cut(s)	30
MaeI	CTAG	1 cut(s)	347
MaeII	ACGT	1 cut(s)	164
MalI	GATC	1 cut(s)	308
MbiI	CCGCTC	1 cut(s)	364
MboI	GATC	1 cut(s)	306
MboII	GAAGA	6 cut(s)	61, 64, 94, 108, 205, 311
MfeI	CAATTG	1 cut(s)	302
MluCI	AATT	6 cut(s)	5, 302, 339, 356, 375, 380
MlyI	GAGTC	1 cut(s)	76
MmeI	TCCRAC	1 cut(s)	34
MnlI	CCTC	4 cut(s)	168, 258, 262, 327
MseI	TTAA	1 cut(s)	342
MspI	CCGG	1 cut(s)	222
MspR9I	CCNGG	1 cut(s)	262
MunI	CAATTG	1 cut(s)	302
MvaI	CCWGG	1 cut(s)	262
MvnI	CGCG	1 cut(s)	291
NcoI	CCATGG	1 cut(s)	141
NdeII	GATC	1 cut(s)	306
NlaIII	CATG	3 cut(s)	145, 287, 301
NlaIV	GGNNCC	3 cut(s)	259, 315, 368
PfeI	GAWTC	2 cut(s)	146, 198
PkrI	GCNGC	1 cut(s)	20
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
Psp6I	CCWGG	1 cut(s)	260
PspGI	CCWGG	1 cut(s)	260
PspN4I	GGNNCC	3 cut(s)	259, 315, 368
PspPI	GGNCC	1 cut(s)	257
PstI	CTGCAG	1 cut(s)	20
RsaI	GTAC	1 cut(s)	315
RsaNI	GTAC	1 cut(s)	314
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	1 cut(s)	19
Sau3AI	GATC	1 cut(s)	306
Sau96I	GGNCC	1 cut(s)	257
SchI	GAGTC	1 cut(s)	76
ScrFI	CCNGG	1 cut(s)	262
SetI	ASST	6 cut(s)	167, 210, 219, 243, 315, 319
SfcI	CTRYAG	1 cut(s)	16
SinI	GGWCC	1 cut(s)	257
SpeI	ACTAGT	1 cut(s)	346
Sse9I	AATT	6 cut(s)	5, 302, 339, 356, 375, 380
SsiI	CCGC	3 cut(s)	54, 289, 364
SspMI	CTAG	1 cut(s)	347
StyD4I	CCNGG	1 cut(s)	260
StyI	CCWWGG	1 cut(s)	141
TaaI	ACNGT	1 cut(s)	41
TaiI	ACGT	1 cut(s)	167
TasI	AATT	6 cut(s)	5, 302, 339, 356, 375, 380
TfiI	GAWTC	2 cut(s)	146, 198
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TseI	GCWGC	1 cut(s)	18
TspDTI	ATGAA	1 cut(s)	286
VpaK11BI	GGWCC	1 cut(s)	257
XapI	RAATTY	2 cut(s)	5, 356
XcmI	CCANNNNNNNNNTGG	1 cut(s)	118
XmiI	GTMKAC	1 cut(s)	43
XspI	CTAG	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.