Rh6CG325400

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0025096
Physical Location & Seq
Reverse (-)
51292140 .. 51293773
1634 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG325400.1

Sequence Viewer

Length: 1188 bp
ATGTTTCTCGAGCTGTTAGCCTTCTCCTCCCTACTCATCCTCCCCTTGCTTTTCTTCATCCTCAAGCTTTCCGGCAACTCGAAAACCAACAGCAACAGCAAGCTCCCCAAATCATACCCAATAATCAGTTCATTCCCAGCCCTCTACAAGAACTATGCCAATAGACTCCCATGGTTCACTGAGCTTCTCCAAGACTCGCCCACATCTACTATTACTATGCACCATTCTCTGGGCTGCCAGCCTGCCACTTCGTCGTCACCGCCAACTCGGCCGTGGTCCAGCACATCCTCAAGACAAAGTTCCACATCTACCAAAAGGGCGAGTCCTTCCGTACAACTCTCCACGACCTCCTTGGCGATGGGATTTTCAACGCCGACGGTGACAATTGGAAGTTCCAGTGGCAACTCTCCAGCCATGAATTCAACACAAAATCTTCCAGCGACCGAACCATGCATTCTCGATTTCCAAGACATTCTCCAGCGGTTCGCCTTCGACAACATTTGCCGGATCGGGTTCGGGTACGACCCGGAGTATCTCCTTCCTTCTCTGCCGCAAGCTAAATTCGCGGTGGCGTTCGACAATGAGGTCCAGATCAGCAGCGAAAGGTTCAGTTCCACGCGCCCGGTGTGGAAGATCAAACGAGCTCTCGGAATCGGATCGGAAAGCCATCTCCACTGTGTGGTCTCTAACGTCCGAGAGTTTGCGAACACCACCGTCAAGCAAAAGAAGCATGAAATGGACGAGGAGAAGACTCTGGAGTCTCATGATCTGCTGTCTAGGTTCTTGAGCACCGGCCATTCCGATGAGAAATTCGTCACTGACATCGTCATCAGCTTCACTCTCGCCGGAAGGGACACGACCTCGGCGGCTTTGACCTGGTTCTTCTGGCTAATCTCAAACCATCCAAAAGTCGAAAACCAAATTCTCAAGGAGATCAATGAGAAAACGGAGACCGGAGCCAGATATGATGAAGCGAAGGAGATGGTGTACACACACGTGGCGATCTGTGAGAGCATGAGGCTGTACCCGCCGGTTCCGACTGACAACAAAGAGGCGGTAGAAGACGACGTTTTGCCGGACGGGACTAAAGTGAAGAATGGGACGACAGTGACGTACCACGTGTACGTGATGGGGCGGATGGAGCAGATATGGGGCAAGGATTGGGCCGAGTTCCGTCCCGAGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00073 map00073
Pfam Domains
Protein Families
p450

Protein Analysis

395

Amino Acids

44.29

Weight (kDa)

6.38

Isoelectric Point (pI)

46.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 152 - 395 1e-31 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025096)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0289121
rosa_samantha Rh6CG325400 Rh6DG311300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 584, 757
AccB7I CCANNNNNTGG 2 cut(s) 229, 679
AccII CGCG 2 cut(s) 566, 619
AciI CCGC 8 cut(s) 260, 481, 551, 566, 866, 1028, 1055, 1135
AclWI GGATC 2 cut(s) 515, 664
AcoI YGGCCR 2 cut(s) 269, 793
AcsI RAATTY 4 cut(s) 418, 560, 809, 921
AcvI CACGTG 2 cut(s) 997, 1120
AdeI CACNNNGTG 1 cut(s) 679
AfaI GTAC 6 cut(s) 333, 521, 989, 1025, 1115, 1124
AfiI CCNNNNNNNGG 2 cut(s) 229, 679
AflIII ACRYGT 2 cut(s) 994, 1119
AgsI TTSAA 2 cut(s) 369, 423
AjnI CCWGG 1 cut(s) 875
AjuI GAANNNNNNNTTGG 2 cut(s) 112, 144
AleI CACNNNNGTG 1 cut(s) 995
AluBI AGCT 7 cut(s) 13, 67, 103, 184, 557, 644, 834
AluI AGCT 7 cut(s) 13, 67, 103, 184, 557, 644, 834
Alw21I GWGCWC 2 cut(s) 646, 791
Alw26I GTCTC 3 cut(s) 688, 765, 944
AlwI GGATC 2 cut(s) 515, 664
Ama87I CYCGRG 2 cut(s) 8, 1178
AoxI GGCC 3 cut(s) 269, 793, 1164
ApeKI GCWGC 2 cut(s) 234, 597
ApoI RAATTY 4 cut(s) 418, 560, 809, 921
AspLEI GCGC 1 cut(s) 621
AspS9I GGNCC 3 cut(s) 276, 586, 1164
AsuC2I CCSGG 2 cut(s) 527, 623
AsuHPI GGTGA 2 cut(s) 249, 391
AvaI CYCGRG 2 cut(s) 8, 1178
AvaII GGWCC 2 cut(s) 276, 586
BanII GRGCYC 1 cut(s) 646
BbrPI CACGTG 2 cut(s) 997, 1120
BbsI GAAGAC 2 cut(s) 755, 1068
Bbv12I GWGCWC 2 cut(s) 646, 791
BbvI GCAGC 2 cut(s) 221, 609
BccI CCATC 6 cut(s) 352, 675, 909, 976, 1123, 1132
BceAI ACGGC 1 cut(s) 256
BciT130I CCWGG 1 cut(s) 877
BcnI CCSGG 2 cut(s) 527, 623
BcoDI GTCTC 3 cut(s) 688, 765, 944
BfaI CTAG 1 cut(s) 777
BglI GCCNNNNNGGC 1 cut(s) 268
BisI GCNGC 4 cut(s) 235, 551, 598, 867
BlsI GCNGC 4 cut(s) 236, 552, 599, 868
Bme1390I CCNGG 3 cut(s) 527, 623, 877
Bme18I GGWCC 2 cut(s) 276, 586
BmeT110I CYCGRG 2 cut(s) 8, 1178
BmgT120I GGNCC 3 cut(s) 276, 586, 1164
BmiI GGNNCC 2 cut(s) 958, 1035
BmrFI CCNGG 3 cut(s) 527, 623, 877
BpiI GAAGAC 2 cut(s) 755, 1068
BpmI CTGGAG 3 cut(s) 393, 461, 776
BpuEI CTTGAG 4 cut(s) 47, 274, 805, 911
BpuMI CCSGG 2 cut(s) 527, 623
BsaAI YACGTR 3 cut(s) 997, 1120, 1126
BsaI GGTCTC 2 cut(s) 688, 944
BsaJI CCNNGG 4 cut(s) 170, 272, 351, 861
BsaWI WCCGGW 1 cut(s) 953
BsaXI ACNNNNNCTCC 4 cut(s) 24, 54, 971, 1001
Bsc4I CCNNNNNNNGG 2 cut(s) 229, 679
Bse118I RCCGGY 2 cut(s) 791, 1030
Bse1I ACTGG 1 cut(s) 396
BseBI CCWGG 1 cut(s) 877
BseDI CCNNGG 4 cut(s) 170, 272, 351, 861
BseGI GGATG 5 cut(s) 36, 57, 284, 901, 1143
BseLI CCNNNNNNNGG 2 cut(s) 229, 679
BseMII CTCAG 1 cut(s) 171
BseNI ACTGG 1 cut(s) 396
BseRI GAGGAG 2 cut(s) 16, 758
BseX3I CGGCCG 1 cut(s) 269
BseXI GCAGC 2 cut(s) 221, 609
BseYI CCCAGC 1 cut(s) 136
Bsh1236I CGCG 2 cut(s) 566, 619
Bsh1285I CGRYCG 2 cut(s) 272, 444
BshFI GGCC 3 cut(s) 271, 795, 1166
BsiEI CGRYCG 2 cut(s) 272, 444
BsiHKAI GWGCWC 2 cut(s) 646, 791
BsiHKCI CYCGRG 2 cut(s) 8, 1178
BsiSI CCGG 9 cut(s) 72, 505, 527, 623, 792, 846, 954, 1031, 1076
BslFI GGGAC 4 cut(s) 866, 1096, 1114, 1161
BslI CCNNNNNNNGG 2 cut(s) 229, 679
BsmAI GTCTC 3 cut(s) 688, 765, 944
BsmFI GGGAC 4 cut(s) 866, 1096, 1114, 1161
BsmI GAATGC 1 cut(s) 453
BsnI GGCC 3 cut(s) 271, 795, 1166
Bso31I GGTCTC 2 cut(s) 688, 944
BsoBI CYCGRG 2 cut(s) 8, 1178
Bsp1286I GDGCHC 2 cut(s) 646, 791
Bsp1407I TGTACA 1 cut(s) 987
Bsp143I GATC 7 cut(s) 507, 591, 633, 656, 766, 933, 1002
Bsp19I CCATGG 1 cut(s) 170
BspACI CCGC 8 cut(s) 260, 481, 551, 566, 866, 1028, 1055, 1135
BspANI GGCC 3 cut(s) 271, 795, 1166
BspCNI CTCAG 1 cut(s) 172
BspFNI CGCG 2 cut(s) 566, 619
BspHI TCATGA 1 cut(s) 763
BspLI GGNNCC 2 cut(s) 958, 1035
BspPI GGATC 2 cut(s) 515, 664
BspTNI GGTCTC 2 cut(s) 688, 944
BsrFI RCCGGY 2 cut(s) 791, 1030
BsrGI TGTACA 1 cut(s) 987
BsrI ACTGG 1 cut(s) 396
BssAI RCCGGY 2 cut(s) 791, 1030
BssECI CCNNGG 4 cut(s) 170, 272, 351, 861
BssMI GATC 7 cut(s) 507, 591, 633, 656, 766, 933, 1002
BssT1I CCWWGG 2 cut(s) 170, 351
Bst2UI CCWGG 1 cut(s) 877
Bst4CI ACNGT 4 cut(s) 379, 677, 715, 1108
BstAUI TGTACA 1 cut(s) 987
BstBAI YACGTR 3 cut(s) 997, 1120, 1126
BstC8I GCNNGC 4 cut(s) 101, 239, 243, 555
BstDEI CTNAG 1 cut(s) 180
BstDSI CCRYGG 2 cut(s) 170, 272
BstF5I GGATG 5 cut(s) 36, 57, 284, 901, 1143
BstFNI CGCG 2 cut(s) 566, 619
BstHHI GCGC 1 cut(s) 621
BstKTI GATC 7 cut(s) 510, 594, 636, 659, 769, 936, 1005
BstMAI GTCTC 3 cut(s) 688, 765, 944
BstMBI GATC 7 cut(s) 507, 591, 633, 656, 766, 933, 1002
BstMCI CGRYCG 2 cut(s) 272, 444
BstMWI GCNNNNNNNGC 5 cut(s) 268, 563, 727, 1027, 1141
BstNI CCWGG 1 cut(s) 877
BstSCI CCNGG 3 cut(s) 525, 621, 875
BstUI CGCG 2 cut(s) 566, 619
BstV1I GCAGC 2 cut(s) 221, 609
BstV2I GAAGAC 2 cut(s) 755, 1068
BstZI CGGCCG 1 cut(s) 269
BsuRI GGCC 3 cut(s) 271, 795, 1166
BtgI CCRYGG 2 cut(s) 170, 272
BtgZI GCGATG 1 cut(s) 371
BtsCI GGATG 5 cut(s) 36, 57, 284, 901, 1143
BtsIMutI CAGTG 5 cut(s) 177, 403, 673, 816, 1113
Cac8I GCNNGC 4 cut(s) 101, 239, 243, 555
CciI TCATGA 1 cut(s) 763
CfoI GCGC 1 cut(s) 621
Cfr10I RCCGGY 2 cut(s) 791, 1030
Cfr13I GGNCC 3 cut(s) 276, 586, 1164
CsiI ACCWGGT 1 cut(s) 875
Csp6I GTAC 6 cut(s) 332, 520, 988, 1024, 1114, 1123
CviAII CATG 6 cut(s) 171, 415, 450, 731, 764, 1015
CviQI GTAC 6 cut(s) 332, 520, 988, 1024, 1114, 1123
DdeI CTNAG 1 cut(s) 180
DpnI GATC 7 cut(s) 509, 593, 635, 658, 768, 935, 1004
DpnII GATC 7 cut(s) 507, 591, 633, 656, 766, 933, 1002
DraIII CACNNNGTG 1 cut(s) 679
DrdI GACNNNNNNGTC 2 cut(s) 584, 757
DseDI GACNNNNNNGTC 2 cut(s) 584, 757
EaeI YGGCCR 2 cut(s) 269, 793
EagI CGGCCG 1 cut(s) 269
EciI GGCGGA 1 cut(s) 1150
Ecl136II GAGCTC 1 cut(s) 644
EclXI CGGCCG 1 cut(s) 269
Eco130I CCWWGG 2 cut(s) 170, 351
Eco24I GRGCYC 1 cut(s) 646
Eco31I GGTCTC 2 cut(s) 688, 944
Eco47I GGWCC 2 cut(s) 276, 586
Eco52I CGGCCG 1 cut(s) 269
Eco53kI GAGCTC 1 cut(s) 644
Eco72I CACGTG 2 cut(s) 997, 1120
Eco88I CYCGRG 2 cut(s) 8, 1178
EcoICRI GAGCTC 1 cut(s) 644
EcoRI GAATTC 1 cut(s) 418
EcoRII CCWGG 1 cut(s) 875
EcoT14I CCWWGG 2 cut(s) 170, 351
EcoT22I ATGCAT 1 cut(s) 455
EcoT38I GRGCYC 1 cut(s) 646
ErhI CCWWGG 2 cut(s) 170, 351
FaeI CATG 6 cut(s) 174, 418, 453, 734, 767, 1018
FaqI GGGAC 4 cut(s) 866, 1096, 1114, 1161
FatI CATG 6 cut(s) 170, 414, 449, 730, 763, 1014
FauI CCCGC 1 cut(s) 1035
Fnu4HI GCNGC 4 cut(s) 235, 551, 598, 867
FokI GGATG 5 cut(s) 23, 44, 271, 888, 1150
FriOI GRGCYC 1 cut(s) 646
Fsp4HI GCNGC 4 cut(s) 235, 551, 598, 867
FspBI CTAG 1 cut(s) 777
GlaI GCGC 1 cut(s) 620
GluI GCNGC 4 cut(s) 235, 551, 598, 867
GsaI CCCAGC 1 cut(s) 140
GsuI CTGGAG 3 cut(s) 393, 461, 776
HaeIII GGCC 3 cut(s) 271, 795, 1166
HapII CCGG 9 cut(s) 72, 505, 527, 623, 792, 846, 954, 1031, 1076
HhaI GCGC 1 cut(s) 621
Hin1II CATG 6 cut(s) 174, 418, 453, 734, 767, 1018
Hin6I GCGC 1 cut(s) 619
HinP1I GCGC 1 cut(s) 619
HindIII AAGCTT 1 cut(s) 65
HinfI GANTC 6 cut(s) 165, 194, 322, 651, 751, 758
HpaII CCGG 9 cut(s) 72, 505, 527, 623, 792, 846, 954, 1031, 1076
HphI GGTGA 2 cut(s) 249, 391
Hpy166II GTNNAC 4 cut(s) 177, 988, 990, 1123
Hpy188I TCNGA 6 cut(s) 650, 656, 661, 695, 802, 1038
Hpy188III TCNNGA 8 cut(s) 8, 291, 458, 589, 755, 764, 784, 1178
Hpy8I GTNNAC 4 cut(s) 177, 988, 990, 1123
Hpy99I CGWCG 3 cut(s) 256, 379, 1070
HpyAV CCTTC 7 cut(s) 31, 336, 499, 548, 552, 843, 970
HpyCH4III ACNGT 4 cut(s) 379, 677, 715, 1108
HpyCH4IV ACGT 6 cut(s) 690, 996, 1068, 1112, 1119, 1125
HpyCH4V TGCA 2 cut(s) 220, 453
HpyF10VI GCNNNNNNNGC 5 cut(s) 268, 563, 727, 1027, 1141
HpyF3I CTNAG 1 cut(s) 180
HpySE526I ACGT 6 cut(s) 690, 996, 1068, 1112, 1119, 1125
Hsp92II CATG 6 cut(s) 174, 418, 453, 734, 767, 1018
HspAI GCGC 1 cut(s) 619
Kzo9I GATC 7 cut(s) 507, 591, 633, 656, 766, 933, 1002
LmnI GCTCC 3 cut(s) 108, 956, 1141
Lsp1109I GCAGC 2 cut(s) 221, 609
MabI ACCWGGT 1 cut(s) 875
MaeI CTAG 1 cut(s) 777
MaeII ACGT 6 cut(s) 690, 996, 1068, 1112, 1119, 1125
MaeIII GTNAC 4 cut(s) 255, 379, 814, 1108
MalI GATC 7 cut(s) 509, 593, 635, 658, 768, 935, 1004
MboI GATC 7 cut(s) 507, 591, 633, 656, 766, 933, 1002
MboII GAAGA 7 cut(s) 46, 425, 643, 760, 874, 1073, 1105
MfeI CAATTG 1 cut(s) 384
MhlI GDGCHC 2 cut(s) 646, 791
MluCI AATT 5 cut(s) 384, 418, 560, 809, 921
MlyI GAGTC 5 cut(s) 159, 188, 331, 745, 767
MmeI TCCRAC 1 cut(s) 1061
Mph1103I ATGCAT 1 cut(s) 455
MslI CAYNNNNRTG 2 cut(s) 801, 995
MspA1I CMGCKG 1 cut(s) 481
MspI CCGG 9 cut(s) 72, 505, 527, 623, 792, 846, 954, 1031, 1076
MspR9I CCNGG 3 cut(s) 527, 623, 877
MunI CAATTG 1 cut(s) 384
Mva1269I GAATGC 1 cut(s) 453
MvaI CCWGG 1 cut(s) 877
MvnI CGCG 2 cut(s) 566, 619
MwoI GCNNNNNNNGC 5 cut(s) 268, 563, 727, 1027, 1141
NciI CCSGG 2 cut(s) 527, 623
NcoI CCATGG 1 cut(s) 170
NdeII GATC 7 cut(s) 507, 591, 633, 656, 766, 933, 1002
NlaIII CATG 6 cut(s) 174, 418, 453, 734, 767, 1018
NlaIV GGNNCC 2 cut(s) 958, 1035
NmeAIII GCCGAG 2 cut(s) 247, 842
NmuCI GTSAC 4 cut(s) 255, 379, 814, 1108
NsiI ATGCAT 1 cut(s) 455
OliI CACNNNNGTG 1 cut(s) 995
PaeR7I CTCGAG 1 cut(s) 8
PagI TCATGA 1 cut(s) 763
PcsI WCGNNNNNNNCGW 1 cut(s) 1109
PctI GAATGC 1 cut(s) 453
PfeI GAWTC 1 cut(s) 651
PflFI GACNNNGTC 1 cut(s) 824
PflMI CCANNNNNTGG 2 cut(s) 229, 679
PkrI GCNGC 4 cut(s) 236, 552, 599, 868
PleI GAGTC 5 cut(s) 159, 188, 330, 745, 766
PmaCI CACGTG 2 cut(s) 997, 1120
PmlI CACGTG 2 cut(s) 997, 1120
PpsI GAGTC 5 cut(s) 159, 188, 330, 745, 766
Ppu21I YACGTR 3 cut(s) 997, 1120, 1126
Psp124BI GAGCTC 1 cut(s) 646
Psp6I CCWGG 1 cut(s) 875
PspCI CACGTG 2 cut(s) 997, 1120
PspFI CCCAGC 1 cut(s) 136
PspGI CCWGG 1 cut(s) 875
PspN4I GGNNCC 2 cut(s) 958, 1035
PspPI GGNCC 3 cut(s) 276, 586, 1164
PsyI GACNNNGTC 1 cut(s) 824
RsaI GTAC 6 cut(s) 333, 521, 989, 1025, 1115, 1124
RsaNI GTAC 6 cut(s) 332, 520, 988, 1024, 1114, 1123
RseI CAYNNNNRTG 2 cut(s) 801, 995
SacI GAGCTC 1 cut(s) 646
SatI GCNGC 4 cut(s) 235, 551, 598, 867
Sau3AI GATC 7 cut(s) 507, 591, 633, 656, 766, 933, 1002
Sau96I GGNCC 3 cut(s) 276, 586, 1164
SchI GAGTC 5 cut(s) 159, 188, 331, 745, 767
ScrFI CCNGG 3 cut(s) 527, 623, 877
SduI GDGCHC 2 cut(s) 646, 791
SexAI ACCWGGT 1 cut(s) 875
Sfr274I CTCGAG 1 cut(s) 8
SinI GGWCC 2 cut(s) 276, 586
SlaI CTCGAG 1 cut(s) 8
SmiMI CAYNNNNRTG 2 cut(s) 801, 995
SmlI CTYRAG 5 cut(s) 8, 62, 289, 784, 926
SmoI CTYRAG 5 cut(s) 8, 62, 289, 784, 926
Sse9I AATT 5 cut(s) 384, 418, 560, 809, 921
SsiI CCGC 8 cut(s) 260, 481, 551, 566, 866, 1028, 1055, 1135
SspMI CTAG 1 cut(s) 777
SstI GAGCTC 1 cut(s) 646
StyD4I CCNGG 3 cut(s) 525, 621, 875
StyI CCWWGG 2 cut(s) 170, 351
TaaI ACNGT 4 cut(s) 379, 677, 715, 1108
TaiI ACGT 6 cut(s) 693, 999, 1071, 1115, 1122, 1128
TaqI TCGA 6 cut(s) 9, 80, 459, 492, 576, 912
TaqII GACCGA 1 cut(s) 458
TasI AATT 5 cut(s) 384, 418, 560, 809, 921
TatI WGTACW 1 cut(s) 987
TauI GCSGC 2 cut(s) 553, 869
TfiI GAWTC 1 cut(s) 651
TscAI CASTG 5 cut(s) 184, 403, 680, 823, 1113
TseFI GTSAC 4 cut(s) 255, 379, 814, 1108
TseI GCWGC 2 cut(s) 234, 597
Tsp45I GTSAC 4 cut(s) 255, 379, 814, 1108
TspDTI ATGAA 5 cut(s) 46, 120, 431, 747, 984
TspGWI ACGGA 3 cut(s) 319, 962, 1163
TspRI CASTG 5 cut(s) 184, 403, 680, 823, 1113
Tth111I GACNNNGTC 1 cut(s) 824
Van91I CCANNNNNTGG 2 cut(s) 229, 679
VpaK11BI GGWCC 2 cut(s) 276, 586
XapI RAATTY 4 cut(s) 418, 560, 809, 921
XcmI CCANNNNNNNNNTGG 2 cut(s) 270, 349
XhoI CTCGAG 1 cut(s) 8
XspI CTAG 1 cut(s) 777
Zsp2I ATGCAT 1 cut(s) 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.