Rh6DG311300

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0025096
Physical Location & Seq
Reverse (-)
51308093 .. 51308952
860 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG311300.1

Sequence Viewer

Length: 486 bp
ATGTTTCTCGAGCTGTTAGCCTTCTCCTCCCTACTCATCCTCCCCTTGCTTTTCTTCATCCTCAAGCTTTCCGGCAACTCGAAAACCAACAGCAACAGCAAGCTCCCCAAATCATACCCAATAATCAGTTCATTCCCAGCCCTCTACAAGAACTATGCCAATAGACTCCCATGGTTCACTGAGCTTCTCCAAGACTCGCCCACATCTACTATTACTATGCACCATTCTCTGGGCTGCCAGCCTGCCACTTCGTCGTCACCGCCAACTCGGCCGTGGTCCAGCACATCCTCAAGACAAAGTTCCACATCTACCAAAAGGGCGAGTCCTTCCGTACAACTCTCCACGACCTCCTTGGCGATGGGATTTTCAACGCCGACGGTGACAATTGGAAGTTCCAGTGGCAACTCTCCAGCCATGAATTCAACACAAAGTCCCTCAGGAAATTTGTGGAAGACGTGGTGGACACTGAGCTCTACGATCGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00073 map00073
Pfam Domains
Protein Families
p450

Protein Analysis

161

Amino Acids

17.39

Weight (kDa)

10.18

Isoelectric Point (pI)

67.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025096)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0289121
rosa_samantha Rh6CG325400 Rh6DG311300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 229
AciI CCGC 1 cut(s) 260
AcoI YGGCCR 1 cut(s) 269
AcsI RAATTY 2 cut(s) 418, 442
AfaI GTAC 1 cut(s) 333
AfiI CCNNNNNNNGG 1 cut(s) 229
AgsI TTSAA 2 cut(s) 369, 423
AjiI CACGTC 1 cut(s) 456
AjuI GAANNNNNNNTTGG 2 cut(s) 112, 144
AluBI AGCT 5 cut(s) 13, 67, 103, 184, 471
AluI AGCT 5 cut(s) 13, 67, 103, 184, 471
Alw21I GWGCWC 1 cut(s) 473
Ama87I CYCGRG 1 cut(s) 8
AoxI GGCC 1 cut(s) 269
ApeKI GCWGC 1 cut(s) 234
ApoI RAATTY 2 cut(s) 418, 442
AspS9I GGNCC 1 cut(s) 276
AsuHPI GGTGA 2 cut(s) 249, 391
AvaI CYCGRG 1 cut(s) 8
AvaII GGWCC 1 cut(s) 276
AxyI CCTNAGG 1 cut(s) 436
BanII GRGCYC 1 cut(s) 473
BbsI GAAGAC 1 cut(s) 458
Bbv12I GWGCWC 1 cut(s) 473
BbvI GCAGC 1 cut(s) 221
BccI CCATC 1 cut(s) 352
BceAI ACGGC 1 cut(s) 256
BglI GCCNNNNNGGC 1 cut(s) 268
BisI GCNGC 1 cut(s) 235
BlsI GCNGC 1 cut(s) 236
Bme18I GGWCC 1 cut(s) 276
BmeT110I CYCGRG 1 cut(s) 8
BmgBI CACGTC 1 cut(s) 456
BmgT120I GGNCC 1 cut(s) 276
BpiI GAAGAC 1 cut(s) 458
BpmI CTGGAG 1 cut(s) 393
BpuEI CTTGAG 2 cut(s) 47, 274
BsaJI CCNNGG 3 cut(s) 170, 272, 351
BsaXI ACNNNNNCTCC 2 cut(s) 24, 54
Bsc4I CCNNNNNNNGG 1 cut(s) 229
Bse1I ACTGG 1 cut(s) 396
Bse21I CCTNAGG 1 cut(s) 436
BseDI CCNNGG 3 cut(s) 170, 272, 351
BseGI GGATG 3 cut(s) 36, 57, 284
BseLI CCNNNNNNNGG 1 cut(s) 229
BseMII CTCAG 3 cut(s) 171, 450, 458
BseNI ACTGG 1 cut(s) 396
BseRI GAGGAG 1 cut(s) 16
BseX3I CGGCCG 1 cut(s) 269
BseXI GCAGC 1 cut(s) 221
BseYI CCCAGC 1 cut(s) 136
Bsh1285I CGRYCG 2 cut(s) 272, 480
BshFI GGCC 1 cut(s) 271
BsiEI CGRYCG 2 cut(s) 272, 480
BsiHKAI GWGCWC 1 cut(s) 473
BsiHKCI CYCGRG 1 cut(s) 8
BsiSI CCGG 1 cut(s) 72
BslFI GGGAC 1 cut(s) 417
BslI CCNNNNNNNGG 1 cut(s) 229
BsmFI GGGAC 1 cut(s) 417
BsnI GGCC 1 cut(s) 271
BsoBI CYCGRG 1 cut(s) 8
Bsp1286I GDGCHC 1 cut(s) 473
Bsp143I GATC 1 cut(s) 477
Bsp19I CCATGG 1 cut(s) 170
BspACI CCGC 1 cut(s) 260
BspANI GGCC 1 cut(s) 271
BspCNI CTCAG 3 cut(s) 172, 449, 459
BsrI ACTGG 1 cut(s) 396
BssECI CCNNGG 3 cut(s) 170, 272, 351
BssMI GATC 1 cut(s) 477
BssT1I CCWWGG 2 cut(s) 170, 351
Bst4CI ACNGT 1 cut(s) 379
BstC8I GCNNGC 3 cut(s) 101, 239, 243
BstDEI CTNAG 3 cut(s) 180, 436, 467
BstDSI CCRYGG 2 cut(s) 170, 272
BstF5I GGATG 3 cut(s) 36, 57, 284
BstKTI GATC 1 cut(s) 480
BstMBI GATC 1 cut(s) 477
BstMCI CGRYCG 2 cut(s) 272, 480
BstMWI GCNNNNNNNGC 1 cut(s) 268
BstV1I GCAGC 1 cut(s) 221
BstV2I GAAGAC 1 cut(s) 458
BstZI CGGCCG 1 cut(s) 269
Bsu36I CCTNAGG 1 cut(s) 436
BsuRI GGCC 1 cut(s) 271
BtgI CCRYGG 2 cut(s) 170, 272
BtgZI GCGATG 1 cut(s) 371
BtrI CACGTC 1 cut(s) 456
BtsCI GGATG 3 cut(s) 36, 57, 284
BtsIMutI CAGTG 3 cut(s) 177, 403, 464
Cac8I GCNNGC 3 cut(s) 101, 239, 243
Cfr13I GGNCC 1 cut(s) 276
Csp6I GTAC 1 cut(s) 332
CviAII CATG 2 cut(s) 171, 415
CviQI GTAC 1 cut(s) 332
DdeI CTNAG 3 cut(s) 180, 436, 467
DpnI GATC 1 cut(s) 479
DpnII GATC 1 cut(s) 477
EaeI YGGCCR 1 cut(s) 269
EagI CGGCCG 1 cut(s) 269
Ecl136II GAGCTC 1 cut(s) 471
EclXI CGGCCG 1 cut(s) 269
Eco130I CCWWGG 2 cut(s) 170, 351
Eco24I GRGCYC 1 cut(s) 473
Eco47I GGWCC 1 cut(s) 276
Eco52I CGGCCG 1 cut(s) 269
Eco53kI GAGCTC 1 cut(s) 471
Eco81I CCTNAGG 1 cut(s) 436
Eco88I CYCGRG 1 cut(s) 8
EcoICRI GAGCTC 1 cut(s) 471
EcoRI GAATTC 1 cut(s) 418
EcoT14I CCWWGG 2 cut(s) 170, 351
EcoT38I GRGCYC 1 cut(s) 473
ErhI CCWWGG 2 cut(s) 170, 351
FaeI CATG 2 cut(s) 174, 418
FaiI YATR 5 cut(s) 115, 156, 172, 218, 416
FaqI GGGAC 1 cut(s) 417
FatI CATG 2 cut(s) 170, 414
Fnu4HI GCNGC 1 cut(s) 235
FokI GGATG 3 cut(s) 23, 44, 271
FriOI GRGCYC 1 cut(s) 473
Fsp4HI GCNGC 1 cut(s) 235
GluI GCNGC 1 cut(s) 235
GsaI CCCAGC 1 cut(s) 140
GsuI CTGGAG 1 cut(s) 393
HaeIII GGCC 1 cut(s) 271
HapII CCGG 1 cut(s) 72
Hin1II CATG 2 cut(s) 174, 418
HindIII AAGCTT 1 cut(s) 65
HinfI GANTC 3 cut(s) 165, 194, 322
HpaII CCGG 1 cut(s) 72
HphI GGTGA 2 cut(s) 249, 391
Hpy166II GTNNAC 2 cut(s) 177, 462
Hpy188III TCNNGA 3 cut(s) 8, 291, 438
Hpy8I GTNNAC 2 cut(s) 177, 462
Hpy99I CGWCG 2 cut(s) 256, 379
HpyAV CCTTC 2 cut(s) 31, 336
HpyCH4III ACNGT 1 cut(s) 379
HpyCH4IV ACGT 1 cut(s) 455
HpyCH4V TGCA 1 cut(s) 220
HpyF10VI GCNNNNNNNGC 1 cut(s) 268
HpyF3I CTNAG 3 cut(s) 180, 436, 467
HpySE526I ACGT 1 cut(s) 455
Hsp92II CATG 2 cut(s) 174, 418
Kzo9I GATC 1 cut(s) 477
LmnI GCTCC 1 cut(s) 108
LpnPI CCDG 9 cut(s) 85, 150, 215, 251, 255, 292, 409, 423, 423
Lsp1109I GCAGC 1 cut(s) 221
MaeII ACGT 1 cut(s) 455
MaeIII GTNAC 2 cut(s) 255, 379
MalI GATC 1 cut(s) 479
MboI GATC 1 cut(s) 477
MboII GAAGA 2 cut(s) 46, 463
MfeI CAATTG 1 cut(s) 384
MhlI GDGCHC 1 cut(s) 473
MluCI AATT 3 cut(s) 384, 418, 442
MlyI GAGTC 3 cut(s) 159, 188, 331
MnlI CCTC 7 cut(s) 37, 50, 71, 152, 298, 358, 445
MspI CCGG 1 cut(s) 72
MunI CAATTG 1 cut(s) 384
MwoI GCNNNNNNNGC 1 cut(s) 268
NcoI CCATGG 1 cut(s) 170
NdeII GATC 1 cut(s) 477
NlaIII CATG 2 cut(s) 174, 418
NmeAIII GCCGAG 1 cut(s) 247
NmuCI GTSAC 2 cut(s) 255, 379
PaeR7I CTCGAG 1 cut(s) 8
PflMI CCANNNNNTGG 1 cut(s) 229
PkrI GCNGC 1 cut(s) 236
Ple19I CGATCG 1 cut(s) 480
PleI GAGTC 3 cut(s) 159, 188, 330
PpsI GAGTC 3 cut(s) 159, 188, 330
Psp124BI GAGCTC 1 cut(s) 473
PspFI CCCAGC 1 cut(s) 136
PspPI GGNCC 1 cut(s) 276
PvuI CGATCG 1 cut(s) 480
RsaI GTAC 1 cut(s) 333
RsaNI GTAC 1 cut(s) 332
SacI GAGCTC 1 cut(s) 473
SatI GCNGC 1 cut(s) 235
Sau3AI GATC 1 cut(s) 477
Sau96I GGNCC 1 cut(s) 276
SchI GAGTC 3 cut(s) 159, 188, 331
SduI GDGCHC 1 cut(s) 473
SetI ASST 7 cut(s) 15, 69, 105, 186, 350, 458, 473
Sfr274I CTCGAG 1 cut(s) 8
SinI GGWCC 1 cut(s) 276
SlaI CTCGAG 1 cut(s) 8
SmlI CTYRAG 3 cut(s) 8, 62, 289
SmoI CTYRAG 3 cut(s) 8, 62, 289
Sse9I AATT 3 cut(s) 384, 418, 442
SsiI CCGC 1 cut(s) 260
SstI GAGCTC 1 cut(s) 473
StyI CCWWGG 2 cut(s) 170, 351
TaaI ACNGT 1 cut(s) 379
TaiI ACGT 1 cut(s) 458
TaqI TCGA 2 cut(s) 9, 80
TasI AATT 3 cut(s) 384, 418, 442
TscAI CASTG 3 cut(s) 184, 403, 471
TseFI GTSAC 2 cut(s) 255, 379
TseI GCWGC 1 cut(s) 234
Tsp45I GTSAC 2 cut(s) 255, 379
TspDTI ATGAA 3 cut(s) 46, 120, 431
TspGWI ACGGA 1 cut(s) 319
TspRI CASTG 3 cut(s) 184, 403, 471
Van91I CCANNNNNTGG 1 cut(s) 229
VpaK11BI GGWCC 1 cut(s) 276
XapI RAATTY 2 cut(s) 418, 442
XcmI CCANNNNNNNNNTGG 2 cut(s) 270, 349
XhoI CTCGAG 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.