Rh6DG099900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0023025
Physical Location & Seq
Reverse (-)
12583966 .. 12586465
2500 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG099900.1

Sequence Viewer

Length: 309 bp
ATGCTGCTAAGAGGAAAAGAATTTCGAGTTATCGGACCTTTCATGAAAATGGTATATTCACGACGGGGTGGCCGGATTCCATCAGTTGGGTTTTTCAACACCAACCACTCCCTGCCAAAAACAAAGCAAGCTTGGATGGGGAAAGCCGGAGAAGATGACTGCAAGTCTGCAATGAAATCAGTACAGGAAGAAGAACTCGACTCAGCATCACGAAGAGAAGAACTGGCTGCATCTCATCGAATTGCTGCGCCGAGGAGGCGACTAGGCAAGGACGCGAAGTGTGCTGCGTGTCCGCGTCCGAGGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.52

Weight (kDa)

10.51

Isoelectric Point (pI)

72.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0023025)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002048.1_g000024 Rmu_ssc0000295.1_g000020
rosa_samantha Rh6CG110300 Rh6DG099900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 86
AccII CGCG 2 cut(s) 275, 295
AciI CCGC 1 cut(s) 293
AcoI YGGCCR 1 cut(s) 70
AcsI RAATTY 1 cut(s) 20
AfaI GTAC 1 cut(s) 183
AfiI CCNNNNNNNGG 1 cut(s) 86
AgsI TTSAA 1 cut(s) 97
AhdI GACNNNNNGTC 1 cut(s) 163
AluBI AGCT 1 cut(s) 131
AluI AGCT 1 cut(s) 131
AoxI GGCC 1 cut(s) 70
ApeKI GCWGC 4 cut(s) 4, 227, 245, 284
ApoI RAATTY 1 cut(s) 20
AspLEI GCGC 1 cut(s) 250
AspS9I GGNCC 1 cut(s) 35
AvaII GGWCC 1 cut(s) 35
BbvI GCAGC 3 cut(s) 214, 232, 271
BccI CCATC 2 cut(s) 88, 130
BfaI CTAG 1 cut(s) 263
BglI GCCNNNNNGGC 1 cut(s) 256
BisI GCNGC 4 cut(s) 5, 228, 246, 285
BlsI GCNGC 4 cut(s) 6, 229, 247, 286
Bme18I GGWCC 1 cut(s) 35
BmeRI GACNNNNNGTC 1 cut(s) 163
BmgT120I GGNCC 1 cut(s) 35
BmsI GCATC 2 cut(s) 215, 239
BsaJI CCNNGG 2 cut(s) 251, 299
Bsc4I CCNNNNNNNGG 1 cut(s) 86
Bse1I ACTGG 1 cut(s) 228
Bse3DI GCAATG 1 cut(s) 177
BseDI CCNNGG 2 cut(s) 251, 299
BseGI GGATG 1 cut(s) 141
BseLI CCNNNNNNNGG 1 cut(s) 86
BseMI GCAATG 1 cut(s) 177
BseMII CTCAG 1 cut(s) 216
BseNI ACTGG 1 cut(s) 228
BseRI GAGGAG 1 cut(s) 268
BseXI GCAGC 3 cut(s) 214, 232, 271
Bsh1236I CGCG 2 cut(s) 275, 295
BshFI GGCC 1 cut(s) 72
BsiSI CCGG 2 cut(s) 73, 147
BslI CCNNNNNNNGG 1 cut(s) 86
BsnI GGCC 1 cut(s) 72
BspACI CCGC 1 cut(s) 293
BspANI GGCC 1 cut(s) 72
BspCNI CTCAG 1 cut(s) 215
BspFNI CGCG 2 cut(s) 275, 295
BspHI TCATGA 1 cut(s) 42
BsrDI GCAATG 1 cut(s) 177
BsrI ACTGG 1 cut(s) 228
BssECI CCNNGG 2 cut(s) 251, 299
Bst6I CTCTTC 1 cut(s) 208
BstC8I GCNNGC 1 cut(s) 129
BstDEI CTNAG 2 cut(s) 8, 202
BstF5I GGATG 1 cut(s) 141
BstFNI CGCG 2 cut(s) 275, 295
BstHHI GCGC 1 cut(s) 250
BstMWI GCNNNNNNNGC 2 cut(s) 256, 281
BstUI CGCG 2 cut(s) 275, 295
BstV1I GCAGC 3 cut(s) 214, 232, 271
BsuRI GGCC 1 cut(s) 72
BtsCI GGATG 1 cut(s) 141
Cac8I GCNNGC 1 cut(s) 129
CciI TCATGA 1 cut(s) 42
CfoI GCGC 1 cut(s) 250
Cfr13I GGNCC 1 cut(s) 35
CseI GACGC 2 cut(s) 281, 284
Csp6I GTAC 1 cut(s) 182
CviAII CATG 1 cut(s) 43
CviJI RGCY 4 cut(s) 72, 131, 146, 227
CviKI_1 RGCY 4 cut(s) 72, 131, 146, 227
CviQI GTAC 1 cut(s) 182
DdeI CTNAG 2 cut(s) 8, 202
DriI GACNNNNNGTC 1 cut(s) 163
EaeI YGGCCR 1 cut(s) 70
Eam1104I CTCTTC 1 cut(s) 208
Eam1105I GACNNNNNGTC 1 cut(s) 163
EarI CTCTTC 1 cut(s) 208
Eco47I GGWCC 1 cut(s) 35
FaeI CATG 1 cut(s) 46
FaiI YATR 2 cut(s) 44, 55
FatI CATG 1 cut(s) 42
Fnu4HI GCNGC 4 cut(s) 5, 228, 246, 285
FokI GGATG 1 cut(s) 148
Fsp4HI GCNGC 4 cut(s) 5, 228, 246, 285
FspBI CTAG 1 cut(s) 263
GlaI GCGC 1 cut(s) 249
GluI GCNGC 4 cut(s) 5, 228, 246, 285
HaeIII GGCC 1 cut(s) 72
HapII CCGG 2 cut(s) 73, 147
HgaI GACGC 2 cut(s) 281, 284
HhaI GCGC 1 cut(s) 250
Hin1II CATG 1 cut(s) 46
Hin6I GCGC 1 cut(s) 248
HinP1I GCGC 1 cut(s) 248
HindIII AAGCTT 1 cut(s) 129
HinfI GANTC 2 cut(s) 76, 200
HpaII CCGG 2 cut(s) 73, 147
Hpy188I TCNGA 2 cut(s) 35, 300
Hpy188III TCNNGA 3 cut(s) 43, 60, 210
Hpy99I CGWCG 1 cut(s) 66
HpyCH4V TGCA 3 cut(s) 162, 170, 230
HpyF10VI GCNNNNNNNGC 2 cut(s) 256, 281
HpyF3I CTNAG 2 cut(s) 8, 202
Hsp92II CATG 1 cut(s) 46
HspAI GCGC 1 cut(s) 248
LpnPI CCDG 5 cut(s) 86, 125, 160, 170, 209
Lsp1109I GCAGC 3 cut(s) 214, 232, 271
LweI GCATC 2 cut(s) 215, 239
MaeI CTAG 1 cut(s) 263
MboII GAAGA 5 cut(s) 164, 200, 203, 225, 230
MluCI AATT 2 cut(s) 20, 240
MlyI GAGTC 1 cut(s) 194
MnlI CCTC 5 cut(s) 5, 246, 249, 294, 297
MslI CAYNNNNRTG 1 cut(s) 47
MspI CCGG 2 cut(s) 73, 147
MvnI CGCG 2 cut(s) 275, 295
MwoI GCNNNNNNNGC 2 cut(s) 256, 281
NlaIII CATG 1 cut(s) 46
NmeAIII GCCGAG 1 cut(s) 276
PagI TCATGA 1 cut(s) 42
PfeI GAWTC 1 cut(s) 76
PflMI CCANNNNNTGG 1 cut(s) 86
PkrI GCNGC 4 cut(s) 6, 229, 247, 286
PleI GAGTC 1 cut(s) 194
PpsI GAGTC 1 cut(s) 194
PspPI GGNCC 1 cut(s) 35
RsaI GTAC 1 cut(s) 183
RsaNI GTAC 1 cut(s) 182
RseI CAYNNNNRTG 1 cut(s) 47
SatI GCNGC 4 cut(s) 5, 228, 246, 285
Sau96I GGNCC 1 cut(s) 35
SchI GAGTC 1 cut(s) 194
SetI ASST 3 cut(s) 40, 133, 308
SfaNI GCATC 2 cut(s) 215, 239
SinI GGWCC 1 cut(s) 35
SmiMI CAYNNNNRTG 1 cut(s) 47
Sse9I AATT 2 cut(s) 20, 240
SsiI CCGC 1 cut(s) 293
SspMI CTAG 1 cut(s) 263
TaqI TCGA 3 cut(s) 25, 198, 238
TasI AATT 2 cut(s) 20, 240
TatI WGTACW 1 cut(s) 181
TfiI GAWTC 1 cut(s) 76
TseI GCWGC 4 cut(s) 4, 227, 245, 284
TspDTI ATGAA 3 cut(s) 31, 59, 188
Van91I CCANNNNNTGG 1 cut(s) 86
VpaK11BI GGWCC 1 cut(s) 35
XapI RAATTY 1 cut(s) 20
XspI CTAG 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.