Rh6DG201000

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0033370
Physical Location & Seq
Forward (+)
35840729 .. 35841289
561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG201000.1

Sequence Viewer

Length: 561 bp
ATGCATAAGTTTTTTATTCCAATCTCTAAAAATCTCGACTGGTTTAACTCAGGATTGGCTGTCTGTGGTGCTGTCGAATATACAGAGAATATATCTGGTACACGTCATTTGACAGTCGAAATTCGTATCAATGACTTTGAGGATACGGTAAGTCTTCATTCAACAGAGATAGAGTCAGATGAAATGTGGTTGCAATACATCCCCTTCTCTACATTCATTGATCGATATTCTTGGGCACATTTATGGGGTCATCACGATTTTGTTGCGCCTGCTGTAAAATATGTCTACTGTCGAGTTAGTGTTGACTATAGTAGCACAAGTTCTATGCGTTTCAAAAGCTTTGGGGTCCACCTAGTAACACCATATCATGATGAATACACGACCTCTGAACAGGAAGTCCTTGAAGATATTGGTACATCTGCAGCTATGAGGAATGAACATAATGATTATGACAATGTTGGCAATATTGAAGACTTGGAAGATGTGCACTTCTCCTATAAAGATGATGAAGAACATCATTCCGAACCTCCTGCAAATCCTCGAAAGAGGAAGACCTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

186

Amino Acids

21.66

Weight (kDa)

4.93

Isoelectric Point (pI)

44.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0033370)

Species Orthologous Gene IDs
rosa_samantha Rh6CG210800 Rh6DG201000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 285
AcsI RAATTY 1 cut(s) 120
AfaI GTAC 2 cut(s) 100, 415
AflIII ACRYGT 1 cut(s) 101
AgsI TTSAA 4 cut(s) 162, 334, 404, 470
AjiI CACGTC 1 cut(s) 104
AloI GAACNNNNNNTCC 2 cut(s) 381, 413
AluBI AGCT 2 cut(s) 339, 425
AluI AGCT 2 cut(s) 339, 425
Alw21I GWGCWC 1 cut(s) 489
Alw44I GTGCAC 1 cut(s) 485
ApaLI GTGCAC 1 cut(s) 485
ApeKI GCWGC 1 cut(s) 422
ApoI RAATTY 1 cut(s) 120
AspLEI GCGC 1 cut(s) 268
AspS9I GGNCC 1 cut(s) 346
AvaII GGWCC 1 cut(s) 346
BaeGI GKGCMC 2 cut(s) 238, 489
BbsI GAAGAC 3 cut(s) 146, 477, 557
Bbv12I GWGCWC 1 cut(s) 489
BbvI GCAGC 1 cut(s) 434
BcgI CGANNNNNNTGC 4 cut(s) 245, 279, 512, 546
BciVI GTATCC 1 cut(s) 136
BfaI CTAG 1 cut(s) 353
BfmI CTRYAG 2 cut(s) 307, 420
BfuI GTATCC 1 cut(s) 136
BisI GCNGC 1 cut(s) 423
BlsI GCNGC 1 cut(s) 424
Bme18I GGWCC 1 cut(s) 346
BmgBI CACGTC 1 cut(s) 104
BmgT120I GGNCC 1 cut(s) 346
BmiI GGNNCC 1 cut(s) 347
BpiI GAAGAC 3 cut(s) 146, 477, 557
Bsa29I ATCGAT 1 cut(s) 223
Bse1I ACTGG 1 cut(s) 44
BseCI ATCGAT 1 cut(s) 223
BseGI GGATG 1 cut(s) 198
BseMII CTCAG 1 cut(s) 63
BseNI ACTGG 1 cut(s) 44
BseSI GKGCMC 2 cut(s) 238, 489
BseXI GCAGC 1 cut(s) 434
BshVI ATCGAT 1 cut(s) 223
BsiHKAI GWGCWC 1 cut(s) 489
Bsp1286I GDGCHC 2 cut(s) 238, 489
Bsp143I GATC 1 cut(s) 220
BspCNI CTCAG 1 cut(s) 62
BspDI ATCGAT 1 cut(s) 223
BspHI TCATGA 1 cut(s) 367
BspLI GGNNCC 1 cut(s) 347
BspMAI CTGCAG 1 cut(s) 424
BsrI ACTGG 1 cut(s) 44
BssMI GATC 1 cut(s) 220
Bst4CI ACNGT 3 cut(s) 115, 148, 290
BstC8I GCNNGC 1 cut(s) 270
BstDEI CTNAG 1 cut(s) 49
BstF5I GGATG 1 cut(s) 198
BstHHI GCGC 1 cut(s) 268
BstKTI GATC 1 cut(s) 223
BstMBI GATC 1 cut(s) 220
BstSFI CTRYAG 2 cut(s) 307, 420
BstSLI GKGCMC 2 cut(s) 238, 489
BstV1I GCAGC 1 cut(s) 434
BstV2I GAAGAC 3 cut(s) 146, 477, 557
Bsu15I ATCGAT 1 cut(s) 223
BsuI GTATCC 1 cut(s) 136
BsuTUI ATCGAT 1 cut(s) 223
BtrI CACGTC 1 cut(s) 104
BtsCI GGATG 1 cut(s) 198
Cac8I GCNNGC 1 cut(s) 270
CciI TCATGA 1 cut(s) 367
CfoI GCGC 1 cut(s) 268
Cfr13I GGNCC 1 cut(s) 346
ClaI ATCGAT 1 cut(s) 223
Csp6I GTAC 2 cut(s) 99, 414
CviAII CATG 1 cut(s) 368
CviJI RGCY 3 cut(s) 59, 339, 425
CviKI_1 RGCY 3 cut(s) 59, 339, 425
CviQI GTAC 2 cut(s) 99, 414
DdeI CTNAG 1 cut(s) 49
DpnI GATC 1 cut(s) 222
DpnII GATC 1 cut(s) 220
Eco47I GGWCC 1 cut(s) 346
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 1 cut(s) 371
FatI CATG 1 cut(s) 367
FblI GTMKAC 1 cut(s) 285
Fnu4HI GCNGC 1 cut(s) 423
FokI GGATG 1 cut(s) 185
Fsp4HI GCNGC 1 cut(s) 423
FspBI CTAG 1 cut(s) 353
GlaI GCGC 1 cut(s) 267
GluI GCNGC 1 cut(s) 423
HhaI GCGC 1 cut(s) 268
Hin1II CATG 1 cut(s) 371
Hin6I GCGC 1 cut(s) 266
HinP1I GCGC 1 cut(s) 266
HincII GTYRAC 1 cut(s) 304
HindII GTYRAC 1 cut(s) 304
HindIII AAGCTT 1 cut(s) 337
HinfI GANTC 1 cut(s) 173
Hpy166II GTNNAC 5 cut(s) 101, 286, 304, 349, 487
Hpy188I TCNGA 3 cut(s) 178, 388, 523
Hpy188III TCNNGA 4 cut(s) 35, 51, 254, 368
Hpy8I GTNNAC 5 cut(s) 101, 286, 304, 349, 487
HpyAV CCTTC 1 cut(s) 214
HpyCH4III ACNGT 3 cut(s) 115, 148, 290
HpyCH4IV ACGT 1 cut(s) 103
HpyCH4V TGCA 5 cut(s) 4, 193, 422, 487, 533
HpyF3I CTNAG 1 cut(s) 49
HpySE526I ACGT 1 cut(s) 103
Hsp92II CATG 1 cut(s) 371
HspAI GCGC 1 cut(s) 266
Kzo9I GATC 1 cut(s) 220
LpnPI CCDG 6 cut(s) 25, 36, 81, 282, 377, 543
Lsp1109I GCAGC 1 cut(s) 434
MaeI CTAG 1 cut(s) 353
MaeII ACGT 1 cut(s) 103
MaeIII GTNAC 1 cut(s) 355
MalI GATC 1 cut(s) 222
MboI GATC 1 cut(s) 220
MboII GAAGA 5 cut(s) 146, 416, 482, 491, 521
MhlI GDGCHC 2 cut(s) 238, 489
MluCI AATT 1 cut(s) 120
MlyI GAGTC 1 cut(s) 182
MnlI CCTC 6 cut(s) 133, 394, 423, 537, 540, 549
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 45
MslI CAYNNNNRTG 1 cut(s) 241
NdeII GATC 1 cut(s) 220
NlaIII CATG 1 cut(s) 371
NlaIV GGNNCC 1 cut(s) 347
NsiI ATGCAT 1 cut(s) 6
PagI TCATGA 1 cut(s) 367
PkrI GCNGC 1 cut(s) 424
PleI GAGTC 1 cut(s) 181
PpsI GAGTC 1 cut(s) 181
PspN4I GGNNCC 1 cut(s) 347
PspPI GGNCC 1 cut(s) 346
PsrI GAACNNNNNNTAC 2 cut(s) 304, 336
PstI CTGCAG 1 cut(s) 424
RsaI GTAC 2 cut(s) 100, 415
RsaNI GTAC 2 cut(s) 99, 414
RseI CAYNNNNRTG 1 cut(s) 241
SaqAI TTAA 1 cut(s) 45
SatI GCNGC 1 cut(s) 423
Sau3AI GATC 1 cut(s) 220
Sau96I GGNCC 1 cut(s) 346
SchI GAGTC 1 cut(s) 182
SduI GDGCHC 2 cut(s) 238, 489
SetI ASST 7 cut(s) 106, 341, 354, 386, 427, 529, 557
SfcI CTRYAG 2 cut(s) 307, 420
SinI GGWCC 1 cut(s) 346
SmiMI CAYNNNNRTG 1 cut(s) 241
Sse9I AATT 1 cut(s) 120
SspI AATATT 1 cut(s) 466
SspMI CTAG 1 cut(s) 353
TaaI ACNGT 3 cut(s) 115, 148, 290
TaiI ACGT 1 cut(s) 106
TaqI TCGA 6 cut(s) 36, 75, 117, 223, 292, 541
TasI AATT 1 cut(s) 120
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TseI GCWGC 1 cut(s) 422
TspDTI ATGAA 6 cut(s) 146, 195, 205, 387, 450, 522
VneI GTGCAC 1 cut(s) 485
VpaK11BI GGWCC 1 cut(s) 346
XapI RAATTY 1 cut(s) 120
XmiI GTMKAC 1 cut(s) 285
XspI CTAG 1 cut(s) 353
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.