Rh6DG276900
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0022169
Physical Location & Seq
Reverse (-)
47059303 .. 47059686
384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG276900.1

Sequence Viewer

Length: 384 bp
ATGAATACGCTCGTCACGATTCTCAGGAACGTTTTTGAGGTAAATCCCATCCTCTTTCGCAATCCAAAAGCATGTTTTCCAGTTGCATCTAGTCCGAAGCCACATATGTTTACTCTCCTTCCAAAACACATCAAACAAAGCGTGTTGTTTGTCTGCATGGAAGTTGCAAGTGAAACGCGTTGTCCCGGGCAAGTTGACATGGAAATGCCAGTTGAAGTCACCGCTAAGATAAAGAGTATGGGTGCCCAAATCGTCGAGGTCGGACCAACAGTAGACCAACAATGCTCTTTGTCTACTGAAACCATTAACGACGTGCACATGCCAGTTGGTGAAATCAAGACCGGGCTATTTGGCAAAGGATCCTGGGCATATACTCAGGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

127

Amino Acids

13.95

Weight (kDa)

6.81

Isoelectric Point (pI)

41.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g19610
rosa_samantha Rh6AG281500 Rh6CG283800 Rh6DG276900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 242
AccI GTMKAC 2 cut(s) 273, 293
AccII CGCG 1 cut(s) 178
AciI CCGC 1 cut(s) 222
AclI AACGTT 1 cut(s) 30
AclWI GGATC 2 cut(s) 354, 367
AflIII ACRYGT 1 cut(s) 176
AgsI TTSAA 1 cut(s) 215
AjiI CACGTC 1 cut(s) 313
AjnI CCWGG 1 cut(s) 362
Alw21I GWGCWC 1 cut(s) 318
Alw44I GTGCAC 1 cut(s) 314
AlwI GGATC 2 cut(s) 354, 367
Ama87I CYCGRG 1 cut(s) 185
ApaLI GTGCAC 1 cut(s) 314
AspS9I GGNCC 1 cut(s) 263
AsuC2I CCSGG 3 cut(s) 186, 187, 343
AsuHPI GGTGA 2 cut(s) 211, 341
AvaI CYCGRG 1 cut(s) 185
AvaII GGWCC 1 cut(s) 263
BaeGI GKGCMC 2 cut(s) 247, 318
BamHI GGATCC 1 cut(s) 359
BanI GGYRCC 1 cut(s) 242
Bbv12I GWGCWC 1 cut(s) 318
BccI CCATC 1 cut(s) 56
BciT130I CCWGG 1 cut(s) 364
BcnI CCSGG 3 cut(s) 186, 187, 343
BfaI CTAG 1 cut(s) 90
Bme1390I CCNGG 4 cut(s) 186, 187, 343, 364
Bme18I GGWCC 1 cut(s) 263
BmeT110I CYCGRG 1 cut(s) 185
BmgBI CACGTC 1 cut(s) 313
BmgT120I GGNCC 1 cut(s) 263
BmiI GGNNCC 2 cut(s) 244, 361
BmrFI CCNGG 4 cut(s) 186, 187, 343, 364
BmsI GCATC 1 cut(s) 95
BpuMI CCSGG 3 cut(s) 186, 187, 343
BsaJI CCNNGG 2 cut(s) 185, 363
Bse1I ACTGG 3 cut(s) 80, 209, 323
BseBI CCWGG 1 cut(s) 364
BseDI CCNNGG 2 cut(s) 185, 363
BseGI GGATG 1 cut(s) 48
BseMII CTCAG 1 cut(s) 37
BseNI ACTGG 3 cut(s) 80, 209, 323
BseSI GKGCMC 2 cut(s) 247, 318
Bsh1236I CGCG 1 cut(s) 178
BshNI GGYRCC 1 cut(s) 242
BsiHKAI GWGCWC 1 cut(s) 318
BsiHKCI CYCGRG 1 cut(s) 185
BsiSI CCGG 2 cut(s) 186, 342
BslFI GGGAC 1 cut(s) 168
BsmFI GGGAC 1 cut(s) 168
BsoBI CYCGRG 1 cut(s) 185
Bsp1286I GDGCHC 2 cut(s) 247, 318
Bsp143I GATC 1 cut(s) 359
BspACI CCGC 1 cut(s) 222
BspCNI CTCAG 1 cut(s) 36
BspFNI CGCG 1 cut(s) 178
BspLI GGNNCC 2 cut(s) 244, 361
BspPI GGATC 2 cut(s) 354, 367
BspT107I GGYRCC 1 cut(s) 242
BsrI ACTGG 3 cut(s) 80, 209, 323
BssECI CCNNGG 2 cut(s) 185, 363
BssMI GATC 1 cut(s) 359
Bst2UI CCWGG 1 cut(s) 364
Bst4CI ACNGT 1 cut(s) 271
BstDEI CTNAG 3 cut(s) 23, 225, 375
BstF5I GGATG 1 cut(s) 48
BstFNI CGCG 1 cut(s) 178
BstKTI GATC 1 cut(s) 362
BstMBI GATC 1 cut(s) 359
BstNI CCWGG 1 cut(s) 364
BstNSI RCATGY 2 cut(s) 75, 322
BstSCI CCNGG 4 cut(s) 184, 185, 341, 362
BstSLI GKGCMC 2 cut(s) 247, 318
BstUI CGCG 1 cut(s) 178
BstX2I RGATCY 1 cut(s) 359
BstYI RGATCY 1 cut(s) 359
BtrI CACGTC 1 cut(s) 313
BtsCI GGATG 1 cut(s) 48
Cfr13I GGNCC 1 cut(s) 263
Cfr9I CCCGGG 1 cut(s) 185
CviAII CATG 4 cut(s) 72, 157, 199, 319
CviJI RGCY 2 cut(s) 100, 346
CviKI_1 RGCY 2 cut(s) 100, 346
DdeI CTNAG 3 cut(s) 23, 225, 375
DpnI GATC 1 cut(s) 361
DpnII GATC 1 cut(s) 359
Eco47I GGWCC 1 cut(s) 263
Eco88I CYCGRG 1 cut(s) 185
EcoRII CCWGG 1 cut(s) 362
FaeI CATG 4 cut(s) 75, 160, 202, 322
FaiI YATR 9 cut(s) 73, 105, 107, 158, 200, 239, 320, 370, 372
FaqI GGGAC 1 cut(s) 168
FatI CATG 4 cut(s) 71, 156, 198, 318
FauNDI CATATG 1 cut(s) 105
FblI GTMKAC 2 cut(s) 273, 293
FokI GGATG 1 cut(s) 35
FspBI CTAG 1 cut(s) 90
HapII CCGG 2 cut(s) 186, 342
Hin1II CATG 4 cut(s) 75, 160, 202, 322
HincII GTYRAC 1 cut(s) 196
HindII GTYRAC 1 cut(s) 196
HinfI GANTC 1 cut(s) 19
HpaII CCGG 2 cut(s) 186, 342
HphI GGTGA 2 cut(s) 211, 341
Hpy166II GTNNAC 5 cut(s) 111, 196, 274, 294, 316
Hpy188I TCNGA 2 cut(s) 96, 263
Hpy188III TCNNGA 3 cut(s) 16, 25, 337
Hpy8I GTNNAC 5 cut(s) 111, 196, 274, 294, 316
Hpy99I CGWCG 2 cut(s) 257, 314
HpyAV CCTTC 1 cut(s) 128
HpyCH4III ACNGT 1 cut(s) 271
HpyCH4IV ACGT 2 cut(s) 30, 312
HpyCH4V TGCA 4 cut(s) 86, 156, 167, 316
HpyF3I CTNAG 3 cut(s) 23, 225, 375
HpySE526I ACGT 2 cut(s) 30, 312
Hsp92II CATG 4 cut(s) 75, 160, 202, 322
Kzo9I GATC 1 cut(s) 359
LpnPI CCDG 9 cut(s) 10, 93, 199, 222, 336, 349, 355, 362, 376
LweI GCATC 1 cut(s) 95
MaeI CTAG 1 cut(s) 90
MaeII ACGT 2 cut(s) 30, 312
MaeIII GTNAC 2 cut(s) 13, 217
MalI GATC 1 cut(s) 361
MboI GATC 1 cut(s) 359
MflI RGATCY 1 cut(s) 359
MhlI GDGCHC 2 cut(s) 247, 318
MluI ACGCGT 1 cut(s) 176
MmeI TCCRAC 1 cut(s) 241
MnlI CCTC 3 cut(s) 31, 62, 250
MseI TTAA 2 cut(s) 306, 382
MslI CAYNNNNRTG 1 cut(s) 203
MspI CCGG 2 cut(s) 186, 342
MspR9I CCNGG 4 cut(s) 186, 187, 343, 364
MvaI CCWGG 1 cut(s) 364
MvnI CGCG 1 cut(s) 178
NciI CCSGG 3 cut(s) 186, 187, 343
NdeI CATATG 1 cut(s) 105
NdeII GATC 1 cut(s) 359
NlaIII CATG 4 cut(s) 75, 160, 202, 322
NlaIV GGNNCC 2 cut(s) 244, 361
NmuCI GTSAC 2 cut(s) 13, 217
NspI RCATGY 2 cut(s) 75, 322
PcsI WCGNNNNNNNCGW 1 cut(s) 14
PfeI GAWTC 1 cut(s) 19
Psp1406I AACGTT 1 cut(s) 30
Psp6I CCWGG 1 cut(s) 362
PspGI CCWGG 1 cut(s) 362
PspN4I GGNNCC 2 cut(s) 244, 361
PspPI GGNCC 1 cut(s) 263
PsuI RGATCY 1 cut(s) 359
RseI CAYNNNNRTG 1 cut(s) 203
SaqAI TTAA 2 cut(s) 306, 382
Sau3AI GATC 1 cut(s) 359
Sau96I GGNCC 1 cut(s) 263
ScrFI CCNGG 4 cut(s) 186, 187, 343, 364
SduI GDGCHC 2 cut(s) 247, 318
SetI ASST 4 cut(s) 33, 42, 261, 315
SfaNI GCATC 1 cut(s) 95
SinI GGWCC 1 cut(s) 263
SmaI CCCGGG 1 cut(s) 187
SmiMI CAYNNNNRTG 1 cut(s) 203
SsiI CCGC 1 cut(s) 222
SspMI CTAG 1 cut(s) 90
StyD4I CCNGG 4 cut(s) 184, 185, 341, 362
TaaI ACNGT 1 cut(s) 271
TaiI ACGT 2 cut(s) 33, 315
TaqI TCGA 1 cut(s) 255
TfiI GAWTC 1 cut(s) 19
Tru1I TTAA 2 cut(s) 306, 382
Tru9I TTAA 2 cut(s) 306, 382
TseFI GTSAC 2 cut(s) 13, 217
Tsp45I GTSAC 2 cut(s) 13, 217
TspDTI ATGAA 1 cut(s) 17
TspMI CCCGGG 1 cut(s) 185
VneI GTGCAC 1 cut(s) 314
VpaK11BI GGWCC 1 cut(s) 263
XceI RCATGY 2 cut(s) 75, 322
XmaI CCCGGG 1 cut(s) 185
XmiI GTMKAC 2 cut(s) 273, 293
XspI CTAG 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.